RT-PCR was performed as described previously [
7]. Briefly, NB-1 and SK-N-SH cells were seeded (1 × 10
6/ml) in 35 mm dish for overnight, trypsinized and washed with PBS. RNA was extracted from the cells with RNeasy mini kit (Qiagen, Valencia, CA, USA). Semi-quantative RT-PCR was carried out by using access quick RT-PCR system (Promega, Madison, WI, USA). Primer Sequence for TLR4, Forward 5 TGGATACGTTTCCTTATAAG 3 and Reverse 5 GAAATGGAGGCACCCCTTC 3 [
8], CD14, forward 5 CTGCAACTTCTCCGAACCTC 3 and reverse 5 TAGGTCCTCGAGCGTCAGTT 5, MD2, forward 5 TTCCACCCTGTTTTCTTCCA 3 and reverse 5 AATCGTCATCAGATCCTCGC 3, MyD88, forward 5 GCACATGGGCACATACAGAC 3 and reverse 5 TGGGTCCTTTCCAGAGTTTG 3 [
9]. GAPDH for TLR4 and G3PDH for CD14, MD2, MyD88 was used as an equal loading control. Optimized reverse transcription and PCR conditions were as follows, TLR4 (48°C for 45 min followed by 95°C for 2 min and 30 cycles at 95°C 30 sec, 56°C for 30 sec, 72°C for 60 sec), CD14, MD2 and MyD88 (48°C for 45 min followed by 95°C for 2 min and 28 cycles at 95°C 30 sec, 60°C 30 sec, 72°C for 1 min). For each experiment RNA extracted from human monocyte U937 was used as a positive control for TLR4, CD14, MD2 and MyD88. PCR products were analyzed by electrophoresis on 2% agarose gel. The gels were stained with CYBR safe DNA gel stain (Molecular probe, Eugene, OR, USA) and visualized under an ultraviolet transilluminator. The 100 bp DNA size marker (Invitrogen, Carlsbad, CA, USA) was also run to determine approximate size of the product.