About 100 mg of frozen cartilage samples was fragmented in a Mikro-Dismembrator (Braun Biotech International, Melsungen, Germany). Total RNA was isolated with the RNeasy Mini Kit (Qiagen, Valencia, USA) and quantified with a fluorimeter (Perkin Elmer, Beaconsfield, UK) with the use of SYBR
® Green II colour reagent (Cambrex Bio Science, Rockland, USA). The quality and integrity of total RNA were assessed on 2% (w/v) agarose gels stained with ethidium bromide. For all samples total RNA (1 μg) was reverse transcribed into cDNA with the Omniscript kit (Qiagen, Hilden, Germany) in accordance with the manufacturer's instructions. Real-time PCR was performed with a Prism 7000 Sequence Detection System from Applied BioSciences (Foster City, CA, USA). Primers were designed to bovine PRG4 (ovine sequence 99% homologous) (forward, 5'-CTGCCCAACATCAGAAAACCC-3' ; reverse, 5'-TTCCTTCGCCCATCAGTCTAAG-3') (Genbank accession no. AF056218) and generated a single PCR product in sheep, which was confirmed by sequencing (SUPAMAC, Sydney, Australia). cDNA (1 μl, corresponding to the reverse transcription of 25 ng of total RNA), 0.5 μl of each primer (10 μM), 0.5 μl of SYBR green (Molecular Probes, Sydney, Australia) and the Platinum Plus Taq (7 μl; Invitrogen, Sydney, Australia), with ROX (6-carboxy-X-rhodamine) (0.1 μl) used as an internal control. The thermal profile was as follows: 50°C for five minutes, 95°C for five minutes, and 40 cycles of 95°C for 15 seconds, 58°C for 30 seconds and 72°C for 30 seconds. Melt curves were also determined to demonstrate the specificity of the amplification. Standard curves were generated from plasmids (pGEM Teasy; Promega, Sydney, Australia) containing the PCR products, and the linear amplification range for both plasmid DNA and sample cDNA was determined. Analysis of the curves showed that the sample diluted in a parallel manner to the plasmid and that the cycle threshold (Ct) for all unknown samples fell within the linear range, allowing quantification of gene copy number relative to the plasmid concentration. Samples were analysed in triplicate and values were normalised to total RNA as recommended for experiments
in vivo involving tissue specimens [
15].