Brain tissue harvesting, biochemical, and immunohistochemical and immunofluorescent endpoints
Mice were anesthetized with 5% (v/v) isoflurane prior to transcardial perfusion with ice-cold PBS for 5 min. The brains were then rapidly removed and were fixed or homogenized as previously described [
9]. IL-1β, TNFα, IL-6, Aβ40, or Aβ42 levels were measured in cortex homogenates using Meso Scale Discovery (MSD) ELISA, as previously described [
9,
17,
18]. Immunohistochemical (IHC) staining was done, and images quantified with the Aperio ScanScope XT digital slide scanner and Aperio ImageScope software positive pixel count algorithm (version 9) as previously described [
9,
17]. Primary antibodies used for IHC staining included: rabbit anti-glial fibrillary acidic protein (GFAP) at 1:10,000 dilution (cat# Z0334; Dako); rat anti-CD68 at 1:5000 dilution (cat# MCA1957T; Serotec); and rat anti-CD45 (YW62.3) at 1:10,000 dilution (cat# MA1447081; ThermoFisher Scientific). For the detection of GFAP, a HRP-conjugated goat anti-rabbit IgG was used. For all other primary antibodies, a biotinylated secondary antibody was amplified in avidin-biotin substrate (ABC kit, Vector Laboratories). All sections were developed in 0.5 mg/ml 3,3-diaminobenzidine tetrahydrochloride solution (Sigma, cat# D5637).
Immunofluorescence staining was done following established methods as previously described [
19,
20]. Antibodies used included: rabbit anti-IBA1 at 1:200 dilution (cat# 019-19741; Wako); and biotin-labeled mouse anti-Aβ (6E10) at 1:200 dilution (cat# 39340-200, Covance). Primary antibodies were detected by Alexa 488 goat anti-rabbit IgG at 1:200 dilutions (cat# A-11034, Life Technologies) or Alexa Fluor 594 streptavidin (cat# S32356, Life Technologies). Immunofluorescent images were taken on a Nikon C2Plus Confocal Microscope using a 40× objective, at 18 μm range with 0.175 μm step size, 2× zoom, 512 × 512 pixel size, 0.0003 mm/pixel. Imaris software (version 8.1.2: Bitplane AG) was used for 3D reconstructions of the confocal Z-stacks. An observer blind to experimental conditions selected regions of interest in the cortex in a pseudo-randomized fashion using the presence of a 6E10 positive Aβ plaque as the only criterion for selection. The surface creation tool was used to create surfaces for Aβ and microglia. Amyloid plaque surfaces larger than 10,000 voxels were considered “large plaques”. Distance transformation tool (MATLAB; version R2016b MathWorks) was used to create the distance channel from plaques. A surface of 15 μm radius around large plaques was created using the distance channel. We empirically tested a range of different radiuses from 2–300 μm on a test image. The goal was to find a radius that captured the majority of microglia that were plaque associated (i.e., touching), while avoiding microglia that were not in close proximity (i.e., not touching) the plaque. 15 μm was chosen as the radius that best met these criteria.
BV2 cell culture
The murine microglial BV2 cell line [
21] was cultured in DMEM/F12 media (cat#15-090-CV, Mediatech) supplemented with 10% FBS, 100 IU/ml penicillin, 100 μg/ml streptomycin (cat# 30-002-CI, Mediatech), and 2 mM L-Glutamine (cat# 25-005-CI, Mediatech), as previously described [
18].
Proliferation, migration, and phagocytosis assays were done as previously described [
19]. Cytochalasin D (CytD; cat# C8273, Sigma), an inhibitor of actin polymerization, was used as a positive control. CytD was dissolved in dimethyl sulfoxide (DMSO; cat# D2650, Sigma); therefore, a DMSO control at the same concentration was included in all experiments. As no difference was found between the saline control and the DMSO control, only the saline control values are shown.
For proliferation assays, BV2 cells were plated in a 96-well plate at 5000 cells/well in the presence of saline, DMSO (0.01%v/v), cytD (1 μM), or MW150 (3.75, 7.5, 15 μM). Cell density (image confluence) was recorded every 2–3 h using IncuCyte Zoom Live Cell Imager (Essen Bioscience) with 10× objective and analyzed with IncuCyte Zoom software (Essen Bioscience). Three independent experiments were performed, with eight technical replicates conducted for each experiment.
For phagocytosis assays, BV2 cells in a 96-well plate (5000 cells/well) were incubated with saline, DMSO (0.01%v/v), cytD (1 μM), or MW150 (3.75, 7.5, 15 μM) for 30 min. pHrodo red E. coli bioparticles (cat# P35361, ThermoFisher Scientific) were then added to the wells at a final concentration of 400 μg/ml. Fluorescence of the BV2 cells in the red channel was recorded every 30 min using IncuCyte Zoom at 20× objective. Three independent experiments were performed, with four technical replicates conducted for each experiment.
BV2 cell migration was assessed in a scratch wound assay. In a 96-well plate, the WoundMaker (Essen Bioscience) was used to create a strip devoid of cells in the center of each well when the cells were approximately 90% confluent. Saline, DMSO (0.01%v/v), cytD (1 μM), or MW150 (3.75, 7.5, 15 μM) was added to each well, and images were recorded every 2–3 h using IncuCyte Zoom with 10× objective. The average size of the scratch wound that had filled with cells at 12 h post-scratch was determined by the percent confluency in the area left nearly devoid of cells after the scratch wound and normalized to vehicle. Three independent experiments were performed, with eight technical replicates conducted for each experiment.
MW150 inhibition of lipopolysaccharide (LPS)-induced proinflammatory cytokine upregulation in BV2 cells was measured as previously described [
14]. Briefly, BV2 cells were plated at a cell density of 2 × 10
4 in a 48-well plate and incubated for 24 h. Cells were then treated with either saline control or 100 ng/ml of LPS (
Salmonella enterica serotype typhimurium, cat# L6143, Sigma, 600,000 EU/mg), in the absence or presence of increasing concentrations of MW150. After 16-h incubation, levels of TNFα in the conditioned media were measured by MSD ELISA.