Altered Ca2+ Kinetics Associated with α-Actinin-3 Deficiency May Explain Positive Selection for ACTN3 Null Allele in Human Evolution

Stewart I. Head; Stephen Chan; Peter J. Houweling; Kate G. R. Quinlan; Robyn Murphy; Sören Wagner; Oliver Friedrich; Kathryn N. North

doi:10.1371/journal.pgen.1004862

Abstract

Over 1.5 billion people lack the skeletal muscle fast-twitch fibre protein α-actinin-3 due to homozygosity for a common null polymorphism (R577X) in the ACTN3 gene. α-Actinin-3 deficiency is detrimental to sprint performance in elite athletes and beneficial to endurance activities. In the human genome, it is very difficult to find single-gene loss-of-function variants that bear signatures of positive selection, yet intriguingly, the ACTN3 null variant has undergone strong positive selection during recent evolution, appearing to provide a survival advantage where food resources are scarce and climate is cold. We have previously demonstrated that α-actinin-3 deficiency in the Actn3 KO mouse results in a shift in fast-twitch fibres towards oxidative metabolism, which would be more “energy efficient” in famine, and beneficial to endurance performance. Prolonged exposure to cold can also induce changes in skeletal muscle similar to those observed with endurance training, and changes in Ca²⁺ handling by the sarcoplasmic reticulum (SR) are a key factor underlying these adaptations. On this basis, we explored the effects of α-actinin-3 deficiency on Ca²⁺ kinetics in single flexor digitorum brevis muscle fibres from Actn3 KO mice, using the Ca²⁺-sensitive dye fura-2. Compared to wild-type, fibres of Actn3 KO mice showed: (i) an increased rate of decay of the twitch transient; (ii) a fourfold increase in the rate of SR Ca²⁺ leak; (iii) a threefold increase in the rate of SR Ca²⁺ pumping; and (iv) enhanced maintenance of tetanic Ca²⁺ during fatigue. The SR Ca²⁺ pump, SERCA1, and the Ca²⁺-binding proteins, calsequestrin and sarcalumenin, showed markedly increased expression in muscles of KO mice. Together, these changes in Ca²⁺ handling in the absence of α-actinin-3 are consistent with cold acclimatisation and thermogenesis, and offer an additional explanation for the positive selection of the ACTN3 577X null allele in populations living in cold environments during recent evolution.

Author Summary

α-Actinin-3 is a protein found inside the muscles of most people around the world. It is encoded by a gene called ACTN3, popularly known as “the gene for speed.” In 1.5 billion people, a certain variation in the genetic sequence of their ACTN3 gene causes their muscles to produce no α-actinin-3 protein at all. These people have no muscle disease; however, in elite athletes, a lack of α-actinin-3 seems to be beneficial for endurance activities and detrimental to sprinting activities. Intriguingly, α-actinin-3 deficiency varies in frequency across the globe, being most common in European and Asian populations and least common in African populations. During recent human evolution, there appears to have been strong positive selection for α-actinin-3 deficiency in places where food resources are relatively scarce and climate is cold. We have previously demonstrated that α-actinin-3 deficiency in the Actn3 knockout (KO) mouse causes a shift towards more “energy efficient” forms of muscle metabolism which would enhance survival in times of famine, and benefit endurance performance. Our present study, using single muscle fibres from Actn3 KO mice, demonstrates changes in calcium handling that would adapt muscles to cold environments and provide a survival advantage in cold climates.

Citation: Head SI, Chan S, Houweling PJ, Quinlan KGR, Murphy R, Wagner S, et al. (2015) Altered Ca²⁺ Kinetics Associated with α-Actinin-3 Deficiency May Explain Positive Selection for ACTN3 Null Allele in Human Evolution. PLoS Genet 11(1): e1004862. https://doi.org/10.1371/journal.pgen.1004862

Editor: Gregory S. Barsh, Stanford University School of Medicine, UNITED STATES

Received: July 8, 2014; Accepted: October 29, 2014; Published: January 15, 2015

Copyright: © 2015 Head et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Data Availability: All relevant data are within the paper.

Funding: This work was funded by the National Health and Medical Research Council of Australia (NHMRC) Grant no. APP1062500, https://www.nhmrc.gov.au/. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Competing interests: The authors have declared that no competing interests exist.

Introduction

The sarcomeric α-actinins, α-actinin-2 and -3, are highly homologous actin-binding proteins localised to the Z-discs of skeletal muscle fibres, where they cross-link the actin filaments of adjoining sarcomeres and interact with a host of metabolic and signalling proteins. α-Actinin-2 is present in all muscle fibre types, while α-actinin-3 is found only in fast glycolytic fibres. An estimated 18% of individuals worldwide completely lack α-actinin-3, due to homozygosity for a common nonsense polymorphism (R577X) in the ACTN3 gene [1].

The ACTN3 577XX null genotype (α-actinin-3 deficiency) is not associated with disease, possibly because there is compensatory up-regulation of α-actinin-2. However, it does appear to have subtle effects on athletic performance. Compared to the general population, the frequency of this genotype is markedly reduced in elite sprint and power athletes [2–6], and increased in elite endurance athletes [6–8]. Hence the ACTN3 gene has become known as the “gene for speed”. The ACTN3 577XX null genotype is also associated with reduced muscle strength and sprint performance in non-athletes [9–12].

We have generated an Actn3 knockout (KO) mouse to investigate the mechanisms by which α-actinin-3 deficiency affects muscle function. The muscles of the KO mouse show striking changes in metabolic properties, with an increased activity of mitochondrial enzymes involved in aerobic metabolism and a reduced activity of enzymes involved in anaerobic metabolism [1,13,14]. This suggests that, in the absence of α-actinin-3, the fast glycolytic fibres have shifted their metabolism from the anaerobic pathway towards the oxidative pathway. There is, however, no change in the myosin heavy chain (MyHC) isoform expression [13]. The metabolic changes in the Actn3 KO mouse are similar to those seen in the muscles of wild-type mice following endurance training, suggesting that Actn3 KO muscle is “pre-trained” for endurance performance [15].

One intriguing question is why the ACTN3 577XX null genotype is so common in humans, and why there is such geographic variation in the frequency of the ACTN3 577X null allele, being less than 10% in African populations and more than 50% in European and Asian populations [1]. Our linkage disequilibrium analysis suggests that the 577X null allele has undergone strong, recent positive selection as modern humans migrated out of Africa into the Northern Hemisphere 40,000–60,000 years ago [1]. This is one of the very rare examples in the human genome of a single-gene loss-of-function variant being positively selected during recent evolution [16]. Friedlander et al. [17] have found that the ACTN3 577XX null genotype has evolved along a global latitudinal gradient, with the null genotype being more common in places with lower mean annual temperature and lower species diversity. Hence the question is why α-actinin-3 deficiency should provide a survival advantage where food resources are scarce and climate is cold.

The altered metabolic profile of Actn3 KO mice provides part of the answer, as a shift from anaerobic to oxidative metabolism would enable more efficient use of the scarce food resources. It would also explain the benefits of α-actinin-3 deficiency to elite athletic endurance performance. This raises the question: if α-actinin-3 deficiency “pre-trains” muscles for endurance performance, could it also “pre-acclimatise” muscles to cold environments?

Bruton et al. [18] have shown that muscles of wild-type mice exposed to prolonged cold undergo changes similar to those observed with endurance training, with increased Ca²⁺ leak from the sarcoplasmic reticulum (SR), increased resting [Ca²⁺]_i (free myoplasmic Ca²⁺ concentration) and increased fatigue resistance. Mechanistically, changes in Ca²⁺ handling by the SR are a key factor underlying these adaptations. Our aim in this study, therefore, is to investigate the Ca²⁺-handling characteristics of single fibres from Actn3 KO mouse muscle, to see if there are any features consistent with cold acclimatisation. We examine the Ca²⁺ transients in fast glycolytic fibres from the flexor digitorum brevis (FDB) muscle of untrained, non-cold-exposed Actn3 KO mice, and provide the first evidence of a heat-generating mechanism that could enhance survival in cold environments and promote the positive selection of the 577X null allele in certain populations.

Results

[Ca²⁺]_i decay during a twitch is faster in Actn3 KO muscle fibres

As an overall indicator of potential alterations in Ca²⁺ handling by α-actinin-3-deficient muscle fibres, we examined Ca²⁺ kinetics of individual twitches in single FDB fibres from WT and Actn3 KO mice. Fig. 1 summarises the kinetics of Ca²⁺ transients elicited by a single action potential. Fig. 1A shows sample transients recorded during a single twitch in a WT fibre and a KO fibre. The superimposed recordings show a clear difference in the shape of the transients. Across our whole sample, there was no difference between WT and Actn3 KO fibres in the time taken to rise from 20% to 80% of maximum [Ca²⁺]_i (Fig. 1B). However, the rate constant of decay was significantly higher in Actn3 KO fibres than in WT fibres, both during the fast phase (Fig. 1C) and slow phase (Fig. 1D) of [Ca²⁺]_i decay. In some cases the resting [Ca²⁺]_i was measured and was not significantly different between WT and Actn3 KO fibres (46 ± 5 nM for WT, n = 5; 47 ± 5 nM for KO, n = 10).

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Figure 1. Ca²⁺ kinetics of single twitches in FDB fibres from WT and Actn3 KO mice.

A Superimposed representative twitch transients from an Actn3 KO and a WT fibre, showing faster [Ca²⁺]_i decay in the KO fibre. Across our sample as a whole, there was no difference between WT and Actn3 KO fibres in the time taken to rise from 20% to 80% of peak (B). However, during decay, the rate constant of decay was significantly higher in Actn3 KO fibres than in WT fibres, both during the fast phase (C) and slow phase (D). (In B, C and D, n = 36 for WT and n = 31 for KO. In C and D, equivalent time constants, in ms, are: 2.2 ± 0.1 for WT and 1.6 ± 0.1 for KO in fast phase; 25.1 ± 0.9 for WT and 16.0 ± 0.2 for KO in slow phase.)

https://doi.org/10.1371/journal.pgen.1004862.g001

SR Ca²⁺ pump function and SR Ca²⁺ leak are both increased in Actn3 KO muscle fibres

Ca²⁺ re-uptake by the sarcoplasmic reticulum (SR) is one of the main contributors to the decline of [Ca²⁺]_i following fibre stimulation [19]. Hence, altered SR Ca²⁺ re-uptake could underlie the faster [Ca²⁺]_i decay rates of Actn3 KO fibres observed in Fig. 1. To examine SR Ca²⁺ re-uptake, we derived SR pump function curves from the slow phases of [Ca²⁺]_i decay in the twitch transients from Fig. 1. SR pump function curves are a standard methodology for examining the function of the SR Ca²⁺ pump under steady-state conditions [18,20–22]. The derivation of the SR pump function curves is explained more fully in the Methods.

Fig. 2A shows the SR pump function curves for FDB fibres from WT and Actn3 KO mice. Each curve shows the relationship between [Ca²⁺]_i and the rate of [Ca²⁺]_i decline during the slow phase of [Ca²⁺]_i decay. It is clear that for any level of [Ca²⁺]_i, the rate of [Ca²⁺]_i decline is higher in KO than in WT. The rate of [Ca²⁺]_i decline is a balance between the rate of SR Ca²⁺ pumping and the rate of Ca²⁺ leak from the SR [21]. To distinguish between these two factors, we used the SR pump equation (Eqn 3) shown in the Methods. The value of A, which reflects the rate of pumping, was significantly higher in fibres of Actn3 KO mice (Fig. 2B). The value of L, which reflects the rate of leak, was also significantly higher in fibres of Actn3 KO mice (Fig. 2C). Hence in Actn3 KO fibres, the faster rate of Ca²⁺ pumping by the SR is counteracted by a faster rate of Ca²⁺ leak from the SR, but overall, [Ca²⁺]_i still declines more quickly during a twitch than in WT fibres.

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Figure 2. SR pump function in FDB fibres of WT and Actn3 KO mice.

A Relationship between [Ca²⁺]_i and −d[Ca²⁺]_i /dt (rate of [Ca²⁺]_i decline) at selected time points during the slow phase of decay in twitch transients. Each point represents the mean ± S.E.M. across all twitch transients analysed in WT and KO fibres. The continuous lines are the SR pump function curves fitted to the points using the equation shown. B The parameter A, which reflects the rate of Ca²⁺ uptake by the SR pump, was significantly higher in fibres of KO mice. C The parameter L, which represents the rate of Ca²⁺ leak from the SR, was significantly higher in fibres of KO mice. (In all figures, n = 9 for WT and n = 9 for KO.)

https://doi.org/10.1371/journal.pgen.1004862.g002

Tetanic [Ca²⁺]_i and [Ca²⁺]_i decay rate are maintained for longer in Actn3 KO muscle fibres during fatigue

As improved fatigue resistance is one of the changes found in muscle fibres of mice exposed to prolonged cold [18], we examined the effect of fatigue on Ca²⁺ transients in muscle fibres of WT and Actn3 KO mice. In muscle fibres fatigued by repeated tetanic stimulation, there is an impairment of SR Ca²⁺ release, manifested as a progressive fall in tetanic [Ca²⁺]_i, and an impairment of SR Ca²⁺ re-uptake, manifested as a progressive fall in the [Ca²⁺]_i decay rate of each tetanic transient [23]. We therefore measured these two factors during a fatigue protocol in which fibres were stimulated at 50 Hz, 500 ms on, 500 ms off until [Ca²⁺]_i had fallen to 30–40% of original.

Fig. 3A shows sample recordings of the progress of [Ca²⁺]_i during the whole fatigue run in a WT fibre and a KO fibre. Individual transients from selected time points are shown on an expanded time scale in Fig. 3B. The recordings show the characteristic pattern of [Ca²⁺]_i changes during repeated stimulation [23], with tetanic [Ca²⁺]_i initially rising, then progressively falling. It is clear that the KO fibre was able to maintain tetanic [Ca²⁺]_i longer into the fatigue run than the WT fibre.

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Figure 3. [Ca²⁺]_i changes during fatigue in FDB fibres of WT and Actn3 KO mice.

A Sample recordings of the progress of [Ca²⁺]_i during the whole fatigue run in a WT fibre and a KO fibre. B Individual transients taken from the time points marked by arrowheads in A. C Time taken for [Ca²⁺]_i to fall to pre-determined percentages of original. In Actn3 KO fibres, [Ca²⁺]_i takes longer to fall to each level than in WT fibres. D Rate constants of decay for the tetanic transients at various time points during fatigue. The rate constant declines as fatigue progresses, but this decline was less marked in KO fibres than in WT. (In C and D, n = 4 for WT and n = 4 for KO; one, two and three asterisks denote p-values less than 0.05, 0.01 and 0.001 respectively; 2-way ANOVA with Bonferroni correction for multiple comparisons.)

https://doi.org/10.1371/journal.pgen.1004862.g003

Across the whole sample, the time taken for tetanic [Ca²⁺]_i to fall to pre-determined percentages of original was significantly longer in KO fibres than in WT fibres (Fig. 3C). The rate constant of [Ca²⁺]_i decay of each tetanic transient fell throughout the fatigue run, and the fall was significantly less pronounced in KO than in WT fibres (Fig. 3D). Hence impairment of SR Ca²⁺ release and re-uptake is less pronounced in Actn3 KO fibres than in WT fibres, and thus Actn3 KO fibres are more resistant to fatigue.

Speed of shortening is unaltered in Actn3 KO muscle fibres

The speed of shortening of a muscle fibre depends largely on the myosin heavy chain (MyHC) isoform present, but also on the Ca²⁺-sensitivity of the contractile proteins, and on the Ca²⁺ release properties of the SR [24]. In previous studies we have already determined that: (i) MyHC expression is unaltered at baseline in Actn3 KO fibres [25]; and (ii) there is no difference between Actn3 KO and WT fibres in the Ca²⁺-sensitivity of the contractile proteins [26]. Hence a difference in speed of shortening could indicate a change in the Ca²⁺ release properties of the SR. We therefore examined the speed of shortening in WT and Actn3 KO fibres by means of a recently developed high-speed imaging technique [27].

Fig. 4A shows image processing results in a representative WT fibre recorded during a single twitch. Fig. 4B shows biomechanical results from WT and Actn3 KO fibres shortening during a single twitch. Maximum shortening distance was about 12% of initial fibre length and not different between WT and KO fibres. Maximum shortening velocities (Fig. 4B and C) were not different between WT and Actn3 KO fibres, and were in agreement with wild-type fibres in our previous studies [27]. The lack of difference in shortening velocities suggests that the Ca²⁺ release properties of the SR are similar in Actn3 KO and WT fibres, and confirms the lack of difference in the rise times of the twitch transient (Fig. 1B).

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Figure 4. Speed of shortening in FDB fibres of WT and Actn3 KO mice.

A Image processing results in a representative WT FDB fibre recorded during electrical stimulation of a single twitch with a repetition frame rate of 422 μs (≈4.1 kfps). The left panel shows the original microscope image along with the processed segmented image for analysis of shortening parameters. The upper and lower border are visualised as straight lines in all images and can be easily followed during the online movie sequence for smoothness of shortening. The right panel shows the created output image containing the l(t), l(t)/L₀, vel(abs), vel(rel), fibre diameters and minimum shortening length calculated from the image processing algorithm. (Note that in the right panel, the text has been overtyped to improve legibility, as the original screenshot could not be obtained at a higher resolution.) B Biomechanical data for WT and Actn3 KO fibres showing maximum shortening during the twitch and maximum shortening velocities in 17 WT and 20 Actn3 KO fibres. C Velocity-diameter dependence of single fibres.

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Expression of SR Ca²⁺-sequestering proteins is increased in Actn3 KO muscle fibres

As we have demonstrated that [Ca²⁺]_i kinetics are altered in Actn3 KO fibres, it was important to examine the expression of the major proteins involved in Ca²⁺ release and re-uptake. Fig. 5 shows results of Western blots performed on extensor digitorum longus (EDL), FDB and quadriceps muscles from WT and Actn3 KO mice. The major proteins involved in the rise of the Ca²⁺ transient are the dihydropyridine-receptor voltage sensor (DHPR) and the ryanodine-receptor Ca²⁺-release channel (RyR1) [28]. There was no difference between WT and KO in the expression of either of these proteins (Fig. 5A). The decay of the Ca²⁺ transient in fast-twitch fibres involves the binding of Ca²⁺ to myoplasmic buffers, the main one being parvalbumin, and the re-uptake of Ca²⁺ by the SR [28]. In fast-twitch fibres the SR Ca²⁺ pump is SERCA1, while calsequestrin and sarcalumenin are Ca²⁺-binding proteins within the SR lumen [29,30]. There was no difference between WT and KO in parvalbumin expression (Fig. 5A and B). However, muscles from Actn3 KO mice showed significantly increased expression of SERCA1, calsequestrin and sarcalumenin (Fig. 5A, B and C).

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Figure 5. Expression of major Ca²⁺-handling proteins in muscles of WT and Actn3 KO mice.

Protein expression analysis of the EDL (A), FDB (B) and quadriceps (C) muscles of WT and Actn3 KO mice. Representative Western blots are shown with densitometry values normalised to total protein and the average of all WT samples. A significant increase in SERCA1 was observed in the EDL, FDB and quadriceps, along with an increase in calsequestrin (CSQ1) in the EDL and sarcalumenin (SAR) in the FDB and quadriceps. No change in RyR1 and DHPR expression were seen in the EDL and parvalbumin (PARVALB) is unchanged in both the EDL and FDB. A total of 6 WT and 6 Actn3 KO EDL, 3 WT and 3 Actn3 KO FDB and 4 WT and 4 Actn3 KO quadriceps muscles were analysed. Statistical analyses were performed using the Mann-Whitney U non-parametric test (* denotes p < 0.05).

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Discussion

Our results provide evidence of Ca²⁺-handling alterations in skeletal muscle fibres deficient in α-actinin-3, alterations which could help explain the high frequency of the ACTN3 577X null allele among populations exposed to cold environments during recent evolution. Firstly, we have shown that α-actinin-3 deficiency in mouse FDB fibres causes changes in Ca²⁺ handling that are similar to those induced by cold exposure, and therefore α-actinin-3 deficiency “pre-acclimatises” skeletal muscles to cold. Secondly, we have demonstrated changes in SR Ca²⁺ pumping and leakage that could provide a potential heat-generating mechanism to enhance survival in cold climates.

Fibres from Actn3 KO mice show Ca²⁺-handling changes similar to those induced by cold-exposure

The FDB fibres from Actn3 KO mice show increased Ca²⁺ leak from the SR (Fig. 2C) and improved fatigue resistance (Fig. 3C and D). Together with an increased activity of mitochondrial enzymes, as reported in our previous publications [1,13,14], these three changes are also hallmarks of FDB muscle fibres from wild-type mice exposed to prolonged cold [18]. Hence α-actinin-3-deficient muscles can be said to be “pre-acclimatised” to cold.

Increased Ca²⁺ leak from the SR.

FDB fibres from Actn3 KO mice showed an approximate fourfold increase in SR Ca²⁺ leak rate compared to fibres from wild-type mice (Fig. 2C). This is of the same magnitude as the increase in SR Ca²⁺ leak rate observed in FDB fibres of mice exposed to prolonged cold [18].

The most likely explanation for the increased leak in Actn3 KO muscle fibres (Fig. 2C) is the increased expression of SERCA1 Ca²⁺ channels in the SR (Fig. 5A, B and C). The SR Ca²⁺ ATP-ase has been shown to be one of the pathways by which Ca²⁺ leaks out of the SR [29,31–33]. The ryanodine-receptor Ca²⁺-release channel (RyR1) is another possible leak pathway [34,35], but since the expression of RyR1 was not increased in Actn3 KO muscle (Fig. 5A), this pathway would not contribute to the increased leak rate of KO fibres, unless the RyR1 channels had become more “leaky”. However, the lack of difference in the rise time of the Ca²⁺ transient (Fig. 1C), and the lack of difference in the speed of fibre shortening (Fig. 4B and C), would argue against any major change in the function of the Ca²⁺-release channel in Actn3 KO mice.

Although SERCA1 expression is clearly increased in the absence of α-actinin-3, it is not possible at present to identify the biochemical link between the sarcomeric α-actinins and the SR Ca²⁺ ATP-ase. In addition to their actin-binding function, multiple molecular interactions have been demonstrated for the sarcomeric α-actinins, and their binding partners include structural proteins such as titin, signalling proteins such as calsarcin, transmembrane proteins such as the L-type Ca²⁺ channel, and metabolic enzymes such as phosphorylase [36]. The sarcomeric α-actinins have been proposed to act as modulators of biological sensors, modifying the function of proteins that sense changes in the mechanical, electrical, ionic or metabolic state of the muscle fibre [37]. A loss of α-actinin-3, and a compensatory increase in α-actinin-2, could affect the way in which these biological sensors are regulated by α-actinin. Further research is required to determine which of these interactions would lead to an increase in SERCA1 expression.

Improved fatigue resistance.

The fatigue-induced decline of tetanic [Ca²⁺]_i was less pronounced in Actn3 KO muscle fibres than in WT fibres (Fig. 3C), and the fatigue-induced slowing of [Ca²⁺]_i decay was less pronounced in Actn3 KO muscle fibres than in WT fibres (Fig. 3D). The shift towards oxidative metabolism in α-actinin-3-deficient fibres [1,13,14] is likely to be a major contributor to these differences. During prolonged repetitive stimulation in skeletal muscle fibres, there is an impairment of SR Ca²⁺ release and re-uptake [23]. The accumulation of inorganic phosphate (P_i) from ATP hydrolysis is a key factor underlying this impairment. P_i inhibits the Ca²⁺-release channel and precipitates Ca²⁺ within the SR, thus reducing tetanic [Ca²⁺]_i. P_i also slows the Ca²⁺ pump, thus reducing the rate of decay of the tetanic transient [23]. The shift towards oxidative metabolism in α-actinin-3-deficient fibres would slow down the accumulation of P_i and thus reduce the magnitude of these effects.

Prolonged cold exposure in mice also results in improved fatigue resistance, with better maintenance of tetanic [Ca²⁺]_i, force and relaxation rate during repetitive stimulation of FDB fibres. This was attributed to an increased capacity for oxidative metabolism due to increased mitochondrial enzyme activity [18].

Increased activity of mitochondrial enzymes.

We have previously shown that α-actinin-3 deficiency results in increased activity of mitochondrial oxidative enzymes in skeletal muscle [1,13,14]. One likely mediator of this effect is calcineurin, a Ca²⁺-calmodulin-dependent protein phosphatase that promotes the transcription of genes involved in fatty acid oxidation, mitochondrial oxidative phosphorylation and the incorporation of glucose into glycogen [38,39]. Calcineurin activity is increased in α-actinin-3-deficient muscle, and this is a consequence of the differential binding interactions of the sarcomeric α-actinins [15]. Briefly, calsarcin-2, a calcineurin inhibitor expressed only in fast-twitch fibres, binds preferentially to α-actinin-2 over α-actinin-3. In the absence of α-actinin-3, α-actinin-2 is up-regulated and binds more calsarcin-2, thus releasing calcineurin from its inhibitory influence [15].

Increased calcineurin activity has also been proposed as one likely mediator of the increased mitochondrial enzyme activity found in FDB fibres of mice exposed to prolonged cold. The increased calcineurin activity in cold-exposed mice was attributed to an increase in global resting [Ca²⁺]_i of about 30 nM following cold exposure [18]. In Actn3 KO fibres, we did not see an increase in global resting [Ca²⁺]_i, possibly because the increased Ca²⁺ leak from the SR was accompanied by an increased rate of Ca²⁺ pumping, whereas in cold-exposed mice the rate of Ca²⁺ pumping actually decreased [18]. However, we cannot rule out the possibility that small local changes in [Ca²⁺]_i might be contributing to increased calcineurin activity, and this would need to be investigated in future studies using full intracellular dye calibrations in WT and Actn3 KO fibres [40].

Our present study suggests one further, calcineurin-independent, means by which α-actinin-3 deficiency can stimulate mitochondrial oxidative activity, namely the increased Ca²⁺ leak from the SR in Actn3 KO muscle fibres (Fig. 2C). Because Ca²⁺ uptake into mitochondria stimulates key enzymes of the tricarboxylic acid (TCA) cycle [41], an increase in oxidative metabolism could be directly caused by the uptake of leaked Ca²⁺ into mitochondria situated close to the SERCA1 channels.

Increased SR Ca²⁺ pumping and leakage provides a thermogenic mechanism in muscles of Actn3 KO mice

In addition to demonstrating that muscles from Actn3 KO mice are “pre-acclimatised” to cold, we have provided evidence of a heat-generating mechanism in fast glycolytic fibres lacking α-actinin-3. Compared to WT fibres containing α-actinin-3, Actn3 KO fibres have an approximately fourfold higher rate of Ca²⁺ leak from the SR (Fig. 2C). This leaked Ca²⁺ must be pumped back into the SR; accordingly, there is an approximate threefold increase in the rate of Ca²⁺ pumping (Fig. 2B). In fact, the increase in pump rate is so effective that in Actn3 KO fibres the SR is able to reduce [Ca²⁺]_i even more quickly during twitch relaxation than in WT fibres (Fig. 2A), even though more Ca²⁺ is leaking back out. This represents a significant increase in the amount of ATP consumed by the pump, and the heat generated by ATP hydrolysis would be especially advantageous in cold environments.

The increase in SERCA1 expression (Fig. 5A, B and C) is the most likely source of the increased pump rate, as well as providing the pathway for increased Ca²⁺ leakage. However, an increase in the number of Ca²⁺ pumps would not in itself guarantee such a large increase in the rate at which the SR resequesters Ca²⁺ from the myoplasm. As Ca²⁺ re-enters the SR lumen, the increase in intraluminal free Ca²⁺ concentration would reduce the gradient for Ca²⁺ pumping and limit the rate of pumping. This problem is overcome by the presence of Ca²⁺ buffers within the SR lumen that bind Ca²⁺ and keep the intraluminal free Ca²⁺ concentration at low levels [28]. The major buffering protein is calsequestrin [29], while sarcalumenin also plays a role [30]. We detected increased expression of both these proteins in the muscles of Actn3 KO mice (Fig. 5A, B and C). Hence it is likely that increased expression of SERCA1, calsequestrin and sarcalumenin all work in concert to markedly raise the rate of SR Ca²⁺ pumping in α-actinin-3-deficient muscle fibres.

This cycle of continuous Ca²⁺ leakage and re-pumping must be sustained by a large increase in ATP production, and one might speculate that the shift towards oxidative metabolism so consistently observed in Actn3 KO muscle [1,13,14] is a response to the metabolic demands of this thermogenic process. The activation of TCA cycle enzymes by mitochondrial uptake of leaked Ca²⁺ represents a direct pathway by which this response might be effected. Hence Ca²⁺ leakage from the SR in α-actinin-3-deficient muscle fibres not only provides the stimulus for thermogenesis, but also provides the stimulus for producing the energy to sustain this process.

Summary and limitations

In summary, we propose that α-actinin-3 deficiency adapts skeletal muscle to cold environments through the mechanisms depicted in Fig. 6. In this scheme, the primary event is a genetic deficiency in α-actinin-3 (1), which through as yet unidentified mechanisms results in an increase in the number of SERCA1 channels (2). These channels provide the pathway for an increased Ca²⁺ leak (3). The uptake of leaked Ca²⁺ into mitochondria causes an increase in mitochondrial enzyme activity (4). Mitochondrial enzyme activity can also be stimulated through increased activity of calcineurin (3a), which has been released from calsarcin-2 inhibition by the up-regulation of α-actinin-2 (2a). The increased oxidative capacity for ATP generation leads to increased fatigue resistance (5). The three characteristics of increased Ca²⁺ leak (3), increased mitochondrial enzyme activity (4) and increased fatigue resistance (5) are also found in the muscles of mice exposed to prolonged cold, and hence α-actinin-3-deficient muscle can be said to be “pre-acclimatised” to cold. In addition, these muscles contain a thermogenic mechanism. The increased Ca²⁺ leak is matched by an increased rate of pumping by the SERCA1 pumps (6), and the pumping is facilitated by the increased expression of the Ca²⁺-binding proteins, calsequestrin and sarcalumenin, within the SR lumen (7). The increased ATP hydrolysis (8) by the SERCA1 pumps generates heat (9). This cold-acclimatisation and thermogenesis in α-actinin-3-deficient muscle provides one possible explanation for the selective favouring of the ACTN3 577X null polymorphism in populations living in cold environments during recent evolution, one of the very rare cases in the human genome of positive selection for a single-gene null allele.

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Figure 6. Cold acclimatisation and thermogenesis in α-actinin-3-deficient fibres.

The diagram shows the mechanisms by which a loss of α-actinin-3 from fast glycolytic muscle fibres could promote adaptation to cold environments. The increased Ca²⁺ leak (3), increased mitochondrial enzyme activity (4) and increased fatigue resistance (5) are all features of muscle fibres from mice exposed to prolonged cold, and hence α-actinin-3 deficiency can be said to “pre-acclimatise” muscles to cold environments. In addition, the increased pumping by the SERCA1 Ca²⁺-ATPase consumes ATP and generates heat (9), providing a thermogenic mechanism which would also enhance cold survival.

https://doi.org/10.1371/journal.pgen.1004862.g006

Despite the similarities between the Actn3 KO muscle fibres in our study and the muscle fibres from the cold-acclimatised mice studied by Bruton et al. [18], we acknowledge that further studies are required to truly confirm the cold-acclimatisation effects of α-actinin-3 deficiency. One important study would be to subject our WT mice to prolonged cold-exposure, and compare the Ca²⁺-handling characteristics of fast glycolytic fibres from these mice with those from non-cold-exposed Actn3 KO mice. It would be important also to measure differences in temperature within muscle fibres from WT, cold-exposed WT and Actn3 KO mice in order to quantify the possible thermogenic effects of α-actinin-3 deficiency. It is also important to confirm that differences in genetic background are not contributing to the differences in Ca²⁺ handling between WT and Actn3 KO mice. Such problems have been minimised in our present study by using Actn3 KO and WT littermates generated on the same genetic background [1].

Materials and Methods

Ethics statement

WT and Actn3 KO mice on a C57BL6 background were sacrificed with an overdose of halothane (UNSW animal ethics approval 11/140B). A separate cohort of WT and Actn3 KO mice was sacrificed at the Children’s Hospital Westmead (CHW animal ethics approval K190/11).

Tissue preparation

WT and Actn3 KO mice on a C57BL6 background were sacrificed with an overdose of halothane (UNSW animal ethics approval 11/140B). The FDB muscle was dissected from the hindlimb and incubated in a muscle digest solution for 30 min at 37°C. The digest solution was a Krebs solution (4.75 mM KCl, 118 NaCl, 1.18 KH₂PO₄, 1.18 MgSO₄, 24.8 NaHCO₃, 2.5 CaCl₂ and 10 glucose) to which was added 3 mg/mL collagenase I (Sigma Chemical Co., St Louis, MO, USA) and 1 mg/mL trypsin inhibitor (Sigma), aerated with 95% O₂-5% CO₂ to maintain pH at 7.4. Following incubation, the muscle mass was washed twice in Krebs-only solution. Individual fibres were then obtained by gently pipetting the muscle mass [42]. A separate cohort of WT and Actn3 KO mice were sacrificed at the Children’s Hospital Westmead (CHW animal ethics approval K190/11). The EDL, FDB and QUAD muscles were dissected and cryopreserved using tissue Tek imbedding medium (O.C.T) and frozen in pre-chilled isopentane for immunohistochemistry (IHC) and western blot analysis.

Fluorescence measurements

The fibres were placed onto glass coverslips for fluorescence microscopy and became firmly attached. Individual muscle fibres were viewed with a 40 UV-F objective on a Nikon TE300 inverted microscope equipped a xenon light source. Fibres with diameter >40 μm were selected; these larger fibres were the MT-II fast [Ca²⁺]_i transient type [43]. An intracellular electrode was used to fill the muscle fibres with the ionised form of the Ca²⁺-sensitive dye fura-2. Fura-2 (1 mM) in distilled H₂O was introduced into the tip of the ionophoretic electrode, and the shank was then filled with 150 mM potassium acetate. Dye was ionophoresed into the muscle fibres to give a final concentration of 5–50 μM fura-2 in the cell [44]. After filling with fura-2, the fibres were left for about 20 min before any readings were taken to allow for complete distribution of the dye in the myoplasm. The ratio of fluorescence emission intensities at 510 nm was sampled via a photo multiplier tube (PMT) at 250 Hz using a spectrophotometer (Cairn) under 340 and 380 nm excitation. However, in order to improve the temporal resolution for the investigation of single twitches (Fig. 1), a single wavelength (380 nm) was used and fluorescence was sampled at 20,000 Hz. An isosbestic measurement was taken and this value was used to construct the ratio values; details of this methodology can be found in our earlier publication [45]. For the single wavelength recordings the gain of the PMT was adjusted on a fibre by fibre basis to improve the signal to noise ratio. The dual wavelength ratiometrically recorded resting [Ca²⁺]_i was used to correct for this. The fibre was stimulated using a bipolar stimulating electrode placed close to the neuromuscular junction, which was visible in the light microscope as a corrugated oval on the fibre. The fibre was stimulated with pulses of 1 ms duration from 1 to 100 Hz. Shortening in response to action potential activation of the fibres was minimal. In some experiments, fibres were immobilised by application of the selective inhibitor of the ATPase activity of skeletal muscle myosin; 4-Methyl-N-(phenylmethyl)benzenesulfonamide (BTS) 25μm to the bath; in this case, the [Ca²⁺]_i transients were not significantly different to those before application of BTS, indicating minimal interference from movement artefacts. During the experiments, the isolated fibres were superfused (1 mL/min) with Krebs solution maintained at room temperature (22°C–24°C) and aerated with 95% O₂-5% CO₂.

The fluorescence of fura-2 was converted to [Ca²⁺]_i using our previously determined in vivo calibration curve measured in isolated fibre segments from mouse extensor digitorum longus muscle [45,46] using the equation determined by Grynkiewicz et al. [47].

Because of the slow binding kinetics of Fura-2, very fast events such as Ca²⁺ release during muscle stimulation are not adequately captured, with a marked underestimation of the rate of Ca²⁺ release. This limitation can be overcome by applying a correction process [45] to the raw [Ca²⁺]_i values. We used this correction in calculating the rise times reported in Fig.1B. The corrected [Ca²⁺]_i was calculated from the raw [Ca²⁺]_i using the following equation [45]: (1) where k₋₁ is the dissociation constant of Ca²⁺-fura-2, equal to 40 s⁻¹ [45]. The rise times of the twitch transient obtained by this equation (see Fig. 1B) are in good agreement with those obtained by Calderón et al [43] for type IIX fibres from mouse FDB muscle using faster, lower-affinity dyes. An example of the effect of this kinetic correction on the calculated rise time of the twitch transient is shown in Fig. 7A.

Download:

Figure 7. Kinetic correction of rise time and exponential fitting of twitch transient decay.

A and B show a sample Ca²⁺ transient elicited by a single action potential in a WT fibre (A, rising portion of transient only, on an expanded time scale; B, whole transient). In A, the black line shows [Ca²⁺]_i as calculated from the raw fura-2 emission signal. The red line shows corrected [Ca²⁺]_i as calculated using Eqn. 1 (see Methods) to account for the slow binding of fura-2. The dashed lines running horizontally across the graph indicate the 20% to 80% range over which rise times were calculated. In this particular instance, the time taken to rise from 20% to 80% of maximum [Ca²⁺]_i is 40% lower in the corrected data than in the raw data. The extra gradations along the time axis indicate the frequency of sampling (20,000 Hz). In B, a double-exponential curve (red line) has been fitted to the decay phase of the Ca²⁺ transient (black line) using Eqn. 2 (see Methods).

https://doi.org/10.1371/journal.pgen.1004862.g007

Kinetics of [Ca²⁺]_i decay were measured by fitting exponential equations to the decay phases of the twitch and tetanic transients. The decay kinetics of the twitch transient (Fig. 1C and D) were calculated by fitting a two-phase exponential equation of the following form: (2) where y is the value of [Ca²⁺]_i at time t, y₀ is the value of [Ca²⁺]_i at the start of decay, y_∞ is the value of [Ca²⁺]_i at the end of decay, f₁ is the fraction of the total drop in [Ca²⁺]_i attributable to the fast phase, k₁ is the rate constant of the fast phase, and k₂ is the rate constant of the slow phase. An example of the double-exponential curve fitted to the decay of the twitch transient is shown in Fig. 7B. The decay kinetics of the tetanic transients during fatiguing stimulation (Fig. 3D) were calculated by fitting a single-phase exponential equation, which is Eqn 2 with f₁ set equal to 1.

It should be noted that the exponential equations were fitted to the raw, not the corrected, [Ca²⁺]_i data because the slower [Ca²⁺]_i changes during decay are adequately captured by fura-2 and as a result the corrected [Ca²⁺]_i largely follows the raw [Ca²⁺]_i [45]. Also, during decay, the correction process introduces extra noise which makes it difficult to fit an exponential equation satisfactorily.

SR pump function curves

A double-exponential function was fitted to the decay phase of the twitch transient, as described above. Then, from the slow phase of the fitted curve, the values of [Ca²⁺]_i and −d[Ca²⁺]_i /dt (decay rate) were determined at selected time points. Then the following SR pump function equation was fitted to these values [20–22]: (3) where A reflects the rate of Ca²⁺ uptake by the SR pump, L represents the rate of Ca²⁺ leak from the SR and N is a power term indicating the cooperativity of Ca²⁺ binding by the SR pump [21]. Following the practice of Westerblad et. al. [22], we set N to a value of 4 to facilitate the comparison of A and L between fibers of WT and Actn3 KO mice. Other investigators have obtained N values close to 4 when allowed to be freely fit [21,22], and in this particular study we obtained N = 4.27 ± 0.09 when allowed to be freely fit.

High-speed recordings of fibre shortening in single electrically stimulated FDB fibres

For high-speed acquisition of transmitted illumination images during shortening of intact single FDB fibres electrically field-stimulated with a single supramaximal voltage pulse of 0.3 ms duration and 10 V amplitude, a CMOS PCO1200hs high-speed camera (PCO AG, Kehlheim, Germany) was mounted to the camera side-port of the Olympus inverted microscope. The Peltier-cooled camera was connected to a PC for acquisition control and data storage. Single fibres approximately covered a 520×160 pixel area when visualised through a ×20 objective which allowed frame rates for shortening sequences to push up to ≈4,200 frames per second. Recordings were synchronised with the induction of a single twitch and image read-out and storage from the ring-buffer of the camera was performed offline. For offline analysis of each experiment, an image sequence of approx. 1,000 to 1,700 frames per fibre were analysed using a modification of a previously written processing algorithm in IDL language environment [27]. This algorithm allows the user to depict the first image of a sequence, reads all subsequent images in a matrix and performs segmentation after the user has defined the region-of-interest including the fibre boundaries. The algorithm extracts the maximum fibre length and runs the shortening sequence on the processed images in a movie sequence to check for online accuracy.

Antibodies, Immunoblotting and Immunohistochemistry

Immunoblotting for selected proteins was performed using equally loaded WT and Actn3 KO FDB and QUAD muscle samples as determined using the Pierce BCA assay kit (Thermo Scientific) and EDL muscles using Stain Free gel technology (BioRad). A total of 4 to 20μg of total protein was loaded per sample and separated by SDS—PAGE on 4–12% pre-cast mini-gels (Life Technologies) or 4–15% Criterion Stain Free gels (BioRad), transferred to polyvinylidene fluoride (Millipore) or nitrocellulose membranes (BioRad) blocked with 5% skim milk/1× tris buffered saline (TBS)/0.1% Tween-20, then probed with indicated antibodies overnight and developed with ECL chemiluminescent reagents (Amersham Biosciences and Thermoscientific). Images were collected using Image Lab software (BioRad) for EDL blots or X-ray film for FDB and QUAD analyses. Primary antibodies for immunoblotting include; EDL muscle lysates: anti-α-actinin-3 (ACTN3; 1:10000, Epitomics), anti-calsequestrin VIIID12 (CSQ1; 1:2000, Abcam), anti-sarcoplasmic reticulum ATPase1 (SERCA1; 1:1000, Developmental studies hybridoma bank (DSHB)), anti-ryanodine receptor 1 (RyR1; 1:300, DSHB), anti-dihydropyridine receptor (DHPR; 1:400, DSHB), anti-Parvalbumin (PARVALB, 1:500, Swant), with secondary goat-anti-mouse IgG-horse radish peroxidase (HRP, 1:20000, Pierce), goat anti-rabbit IgG HRP (1:20000, Pierce) and rabbit anti goat IgG HRP (Invitrogen, 1:20000). FDB and QUAD muscle lysates: anti-α-actinin-3 (ACTN3; 1:1500; gift from A. Beggs, Children’s Hospital Boston), SERCA1 (1:2500; Sigma Aldrich), Sarcalumenin (SAR; 1:1000; Sigma Aldrich), Parvalbumin (PARVALB; 1:1000; Abcam), and α-sarcomeric actin (5C5; 1:2000; Sigma Aldrich). Secondary antibodies used were sheep anti-mouse IgG-HRP conjugates (1:2000; GE Healthcare) and donkey anti-rabbit IgG-HRP conjugates (1:2000; GE Healthcare) [48].

Statistics

Data are presented as Mean ± S.E.M.. Unless otherwise stated, all statistical tests are two-tailed t-tests at a significance level of 5%. All statistical tests and curve fitting were performed using a standard statistical software package (GraphPad Prism Version 6 for Windows, GraphPad Software, San Diego California USA).

Acknowledgments

The monoclonal antibody directed against SERCA1 used in the present study was developed by D.M. Fambrough, that directed against DHPR was developed by K. Campbell, and that directed against RyR1 was developed by Drs J. Airey and J. Sutko. All were obtained from the Development Studies Hybridoma Bank (DSHB), under the auspices of the NICHD and maintained by the University of Iowa, Department of Biological Sciences, Iowa City, IA 52242, USA.

Author Contributions

Conceived and designed the experiments: SIH SC PJH KGRQ RM SW OF KNN. Performed the experiments: SIH SC PJH KGRQ RM SW OF KNN. Analyzed the data: SIH SC PJH KGRQ RM SW OF KNN. Contributed reagents/materials/analysis tools: SIH SC PJH KGRQ RM SW OF KNN. Wrote the paper: SIH SC KNN.

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Altered Ca²⁺ Kinetics Associated with α-Actinin-3 Deficiency May Explain Positive Selection for ACTN3 Null Allele in Human Evolution

Altered Ca²⁺ Kinetics Associated with α-Actinin-3 Deficiency May Explain Positive Selection for ACTN3 Null Allele in Human Evolution

Correction

Figures

Abstract

Author Summary

Introduction

Results

[Ca²⁺]_i decay during a twitch is faster in Actn3 KO muscle fibres

SR Ca²⁺ pump function and SR Ca²⁺ leak are both increased in Actn3 KO muscle fibres

Tetanic [Ca²⁺]_i and [Ca²⁺]_i decay rate are maintained for longer in Actn3 KO muscle fibres during fatigue

Speed of shortening is unaltered in Actn3 KO muscle fibres

Expression of SR Ca²⁺-sequestering proteins is increased in Actn3 KO muscle fibres

Discussion

Fibres from Actn3 KO mice show Ca²⁺-handling changes similar to those induced by cold-exposure

Increased Ca²⁺ leak from the SR.

Improved fatigue resistance.

Increased activity of mitochondrial enzymes.

Increased SR Ca²⁺ pumping and leakage provides a thermogenic mechanism in muscles of Actn3 KO mice

Summary and limitations

Materials and Methods

Ethics statement

Tissue preparation

Fluorescence measurements

SR pump function curves

High-speed recordings of fibre shortening in single electrically stimulated FDB fibres

Antibodies, Immunoblotting and Immunohistochemistry

Statistics

Acknowledgments

Author Contributions

References

Correction

Figures

Abstract

Author Summary

Introduction

Results

[Ca2+]i decay during a twitch is faster in Actn3 KO muscle fibres

SR Ca2+ pump function and SR Ca2+ leak are both increased in Actn3 KO muscle fibres

Tetanic [Ca2+]i and [Ca2+]i decay rate are maintained for longer in Actn3 KO muscle fibres during fatigue

Speed of shortening is unaltered in Actn3 KO muscle fibres

Expression of SR Ca2+-sequestering proteins is increased in Actn3 KO muscle fibres

Discussion

Fibres from Actn3 KO mice show Ca2+-handling changes similar to those induced by cold-exposure

Increased Ca2+ leak from the SR.

Improved fatigue resistance.

Increased activity of mitochondrial enzymes.

Increased SR Ca2+ pumping and leakage provides a thermogenic mechanism in muscles of Actn3 KO mice

Summary and limitations

Materials and Methods

Ethics statement

Tissue preparation

Fluorescence measurements

SR pump function curves

High-speed recordings of fibre shortening in single electrically stimulated FDB fibres

Antibodies, Immunoblotting and Immunohistochemistry

Statistics

Acknowledgments

Author Contributions

References

[Ca²⁺]_i decay during a twitch is faster in Actn3 KO muscle fibres

SR Ca²⁺ pump function and SR Ca²⁺ leak are both increased in Actn3 KO muscle fibres

Tetanic [Ca²⁺]_i and [Ca²⁺]_i decay rate are maintained for longer in Actn3 KO muscle fibres during fatigue

Expression of SR Ca²⁺-sequestering proteins is increased in Actn3 KO muscle fibres

Fibres from Actn3 KO mice show Ca²⁺-handling changes similar to those induced by cold-exposure

Increased Ca²⁺ leak from the SR.

Increased SR Ca²⁺ pumping and leakage provides a thermogenic mechanism in muscles of Actn3 KO mice