Figures
Abstract
Background
Previous studies have focused on the association of miR-34 family members with carcinogenesis of many cancers, including hepatocellular carcinoma (HCC). It has been suggested that miR-34b/c polymorphism (rs4938723) is associated with susceptibility to HCC. In the present study, we performed a meta-analysis to systematically summarize the possible association between rs4938723 and the risk for HCC.
Methodology/Principal Findings
We conducted a search of case-control studies on the associations of rs4938723 with susceptibility to HCC in PubMed, EMBASE, ISI Web of Science, Cochrane Central Register of Controlled Trials, ScienceDirect, Wiley Online Library, Wangfang database in China, and Chinese National Knowledge Infrastructure databases. Data from eligible studies were extracted for meta-analysis. HCC risk associated with rs4938723 was estimated by pooled odds ratios (ORs) and 95% confidence intervals (95% CIs). 3 studies on rs4938723 were included in our meta-analysis. Our results showed that neither allele frequency nor genotype distribution of the rs4938723 was associated with risk for HCC in all genetic models.
Citation: Liang T-J, Liu H-J, Zhao X-Q, Yu C-H, Li C-S (2013) Lack of Association of MiR-34b/c Polymorphism (rs4938723) with Hepatocellular Carcinoma: A Meta-Analysis. PLoS ONE 8(7): e68588. https://doi.org/10.1371/journal.pone.0068588
Editor: William B. Coleman, University of North Carolina School of Medicine, United States of America
Received: May 11, 2013; Accepted: June 3, 2013; Published: July 31, 2013
Copyright: © 2013 Liang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was supported by the National Natural Science Foundation of China (No. ZR2012HM070) and the Young and Middle-Aged Scientists Research Award Fund of Shandong Province of China (No. BS2010YY060). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Introduction
Hepatocellular carcinoma (HCC) is the most common primary malignant cancer of the liver and the third leading cause of death from cancer worldwide. Epidemiological survey suggests that East and South-East Asia and Middle and Western Africa have the highest prevalence of HCC with almost half of the new cases and deaths in China [1]. In HCC carcinogenesis, the molecular basis and genetic changes result in a specific phenotype often associated with varying tumor behaviors relevant to the prognosis and response to specific therapies [2]. MicroRNAs (miRNAs) are small, single-stranded, 19–21 nucleotide long non-protein-coding RNA molecules, functioning as negative regulators that involve post-transcriptional gene expression through binding to their target mRNAs regions and consequently lead to mRNA cleavage or translational repression [3]. Single nucleotide polymorphisms (SNPs) in miRNA-coding genes may have effects on either the expression or the function of miRNAs by altering the secondary structure of miRNA precursors, consequently leading to the aberrant expression of a series of target genes and contributing to cancer susceptibility [4]. Several studies indicated that miR-34b/c gene polymorphism was associated with HCC [5]–[7]. Since the relatively small sample size of a single study may not have enough power to detect slight effects of rs4938723 on HCC, meta-analysis may provide more credible evidence by systematically summarizing existed data. In this study, we have extensively reviewed literature and performed a meta-analysis based on all eligible case-control published data to evaluate the association between rs4938723 and cancer susceptibility.
Methods
Searching
We carried out a publication search in PubMed, EMBASE, ISI Web of Science, Cochrane Central Register of Controlled Trials, ScienceDirect, Wiley Online Library, Wangfang database in China, and Chinese National Knowledge Infrastructure (CNKI) databases with the following search terms: (miR-34b/c OR rs4938723) AND (hepatocellular carcinoma OR liver cancer OR hepatoma), by two independent investigators. Publication date and publication language were not restricted in our search. Reference lists were examined manually to further identify potentially relevant studies. All studies matching the inclusion criteria were retrieved for further examination and data extraction. All of the investigators have received training in literature search, statistics and evidence-based medicine.
Selection
Studies included in this study must meet all the following criteria: (1) evaluated the associations between the rs4938723 and susceptibility to HCC, (2) studied on human beings, (3) in a case-control design, (4) detailed genotype data were provided for the calculation of odds ratio (OR) and 95% confidence interval (95% CI). We assessed the methodological qualities of included studies by the description of study population, detailed genotyping methods, the set of controls and cases and related statistical methods.
Data extraction
For each study, the following characteristics were extracted: the first author's last name, year of publication, country of origin, ethnicity, the numbers of genotyped cases and controls, source of control groups, and genotyping methods.
Statistical analysis
Meta-analysis was performed by using RevMan 5.0 software provided by the Cochrane Collaboration. We directly used Q-test and I2 test to examin the heterogeneity between each study. By heterogeneity test, if P>0.05, we select the Fixed Effect Mode1, and if P<0.05, we select the Random Effect Mode1 to merge HR. P<0.05 was considered as significant difference. Analysis of sensitivity includes the difference of point estimation and confidence intervals of the combined effects value at a different model, to observe whether it changes the result. To test the publication bias, we used the RevMan 5.0 statistical software to make the funnel plot. The rs4938723 was tested for the associations with HCC susceptibility based on different genetic models. The meta-analysis examined the overall association of the rs4938723 with the risk of HCC measured by odds ratios (ORs) at the 95% confidence intervals (CIs). To contrast the wild-type homozygote (TT), we first estimated the risk of the rare allele homozygote (CC) and heterozygous (TC) genotypes on HCC, then evaluated the risk of HCC under a dominant model (CC+TC vs. TT) and a recessive model (TT+TC vs. CC). The statistical significance of the pooled OR was determined with the Z test, and a P value of <0.05 was considered significant.
Results
Study Characteristics
A total of 123 articles were retrieved after first search in PubMed, EMBASE, ISI Web of Science, Cochrane Central Register of Controlled Trials, ScienceDirect, Wiley Online Library, Wangfang in China and CNKI databases. As shown in Figure 1, after our selection, 3 case-control studies fulfilled the inclusion criteria [5]–[7]. The qualities of the studies were considered acceptable for our meta-analysis. Characteristics of included studies are summarized in Table 1. A total of 3 studies involving 1, 672 cases and 1,749 controls for rs4938723 were ultimately analyzed in our meta-analysis. There were 2 studies [5], [6] carried out in Chinese population while 1 study [7] was from South Korea population. Two genotyping methods were employed in the studies including polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and fluorescent-probe real-time quantitative PCR. The genotypes distribution in the controls was in agreement with HWE in all of the included studies.
Meta-analysis
The association between miR-34b/c rs4938723 polymorphism and susceptibility to HCC was analyzed in four independent studies with 1, 672 cases and 1,749 controls. Results of the meta-analysis are shown in Figure 2 Figure 3 and Figure 4. Q-test in all of the genetic models showed no significant heterogeneity. Therefore, fixed-effects model was used to analysis the association. No significant association between miR-34b/c rs4938723 polymorphism and susceptibility to HCC was identified in any of the genetic models (T versus C: OR = 0.95, 95% CI 0.86–1.05, P = 0.35; [TC+CC] versus TT: OR = 1.10, 95% CI 0.96–1.26, P = 0.15; CC versus [TC+TT]: OR = 1.00, 95% CI 0.80–1.24, P = 0.97).
The squares and horizontal lines correspond to the study-specific OR and 95% CI, respectively. The area of the squares reflects the study-specific weight. The diamond represents the pooled results of OR and 95% CI. In this analysis, fixed-effects model was used.
The squares and horizontal lines correspond to the study-specific OR and 95% CI, respectively. The area of the squares reflects the study-specific weight. The diamond represents the pooled results of OR and 95% CI. In this analysis, fixed-effects model was used.
The squares and horizontal lines correspond to the study-specific OR and 95% CI, respectively. The area of the squares reflects the study-specific weight. The diamond represents the pooled results of OR and 95% CI. In this analysis, fixed-effects model was used.
Publication Bias
Funnel plot and Egger's test were performed to assess the publication bias of the literature. Symmetrical funnel plots were obtained in the SNP tested in all of the models. Egger's test further confirmed the absence of publication bias in this meta-analysis (P>0.05) (Fig. 5).
Each circle denotes an independent study for the indicated association. Log[OR], natural logarithm of OR. Horizontal line stands for mean effect size. A: dominant model, B: Recessive model, C: Allele.
Sensitivity Analysis
We deleted one single study from the overall pooled analysis each time to check the influence of the removed data set to the overall ORs. The pooled ORs and 95% CIs were not significantly altered when any part of the study was omitted, which indicated that any single study had little impact on the overall ORs.
Discussion
In the present meta-analysis, we did not find that rs4938723 in the promoter region of pri-miR-34b/c was associated with an increased risk of HCC. The SNP rs4938723 (T>C) located within the CpG island of pri-miR-34b/c and might create a predicted GATA-binding site, and therefore, it may affect miR-34b/c expression by both genetic and epigenetic mechanisms. Ectopic miR-34b/c caused cell cycle arrest in the G1 phase [8] and miR-34b/c inhibited proliferation and colony formation in soft agar [9]. In a previous study, down-regulation of mir-34b/c by methylation was found in colorectal cancer [10], oral cancer [11], and malignant melanoma [12]. And serveral previous studiese reported the rs4938723 in the promoter region of pri-miR-34b/c associated with HCC in the Chinese [5], [6] and the Korean [7].
In this meta-analysis, a total of 3 case-control studies were analyzed to provide a comprehensive assessment of the association between miR-34b/c rs4938723 polymorphism and HCC. Genotypes in all studies were detected with genetic DNA from blood samples using 2 genotyping methods totally. All of the studies checked genotypes for quality control. Genotype distribution of controls in all studies was consistent with HWE. By the meta-analysis, our results did not support a genetic association between rs4938723 and susceptibility to HCC.
Exploring heterogeneity is one of the important goals of meta-analysis [13]. In the present study no significant heterogeneity was found among the included studies (P = 0.62, I2 = 0%). Sensitivity analysis also showed that omission of any single study did not have significant impact on the combined ORs. Furthermore, funnel plot did not reflect obvious asymmetry, and Egger's test further indicated no considerable publication bias in this meta-analysis. This made the results of this meta-study more reliable to some extent.
Be that as it may, there remained some limitations in this meta-analysis. In the studies included, the genotyping methods used were not the same. Besides, other clinical factors such as age, sex and different chemotherapies in each study might lead to bias. Determining whether or not these factors influence the results of this meta-analysis would need further investigation.
In conclusion, our study suggested that SNP rs4938723 in the promoter region of pri-miR-34b/c was associated with a significantly increased risk of HCC. Larger well-designed epidemiological studies with ethnically diverse populations and functional evaluations are warranted to confirm our findings.
Author Contributions
Conceived and designed the experiments: TJL CSL. Performed the experiments: HJL XQZ. Analyzed the data: TJL CHY. Contributed reagents/materials/analysis tools: CHY. Wrote the paper: TJL.
References
- 1. El-Serag HB, Rudolph KL (2007) Hepatocellular carcinoma: epidemiology and molecular carcinogenesis. Gastroenterology 132: 2557–2576.
- 2. El-Serag HB (2011) Hepatocellular carcinoma. N Engl J Med 365: 1118–1127.
- 3. Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281–297.
- 4. Saunders MA, Liang H, Li WH (2007) Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci U S A 104: 3300–3305.
- 5. Son MS, Jang MJ, Jeon YJ, Kim WH, Kwon CI, et al. (2013) Promoter polymorphisms of pri-miR-34b/c are associated with hepatocellular carcinoma. Gene
- 6. Han Y, Pu R, Han X, Zhao J, Zhang Y, et al. (2013) Associations of pri-miR-34b/c and pre-miR-196a2 polymorphisms and their multiplicative interactions with hepatitis B virus mutations with hepatocellular carcinoma risk. PLoS One 8(3): e58564
- 7. Xu Y, Liu L, Liu J, Zhang Y, Zhu J, et al. (2011) A potentially functional polymorphism in the promoter region of miR-34b/c is associated with an increased risk for primary hepatocellular carcinoma. Int J Cancer 128(2): 412–7
- 8. Xiang Y, Fan S, Cao J, Huang S, Zhang LP (2012) Association of the microRNA-499 variants with susceptibility to hepatocellular carcinoma in a Chinese population. Mol Biol Rep 39: 7019–7023.
- 9. Akkiz H, Bayram S, Bekar A, Akgollu E, Ulger Y (2011) A functional polymorphism in pre-microRNA-196a-2 contributes to the susceptibility of hepatocellular carcinoma in a Turkish population: a case–control study. J Viral Hepat 18: e399–e407.
- 10. Toyota M, Suzuki H, Sasaki Y, Maruyama R, Imai K, et al. (2008) Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer. Cancer Res 68: 4123–4132.
- 11. Kozaki K, Imoto I, Mogi S, Omura K, Inazawa J, et al. (2008) Exploration of tumor suppressive microRNAs silenced by DNA hypermethylation in oral cancer. Cancer Res 68: 2094–2105.
- 12. Lujambio A, Ropero S, Ballestar E, Fraga MF, Cerrato C, et al. (2007) Genetic unmasking of an epigenetically silenced microRNA in human cancer cells. Cancer Res 67: 1424–1429.
- 13. Petitti DB (2001) Approaches to heterogeneity in meta-analysis. Stat Med 20: 3625–3633.