Introduction
Material and methods
Study population
Cell lines
Cell line | Entity | Medium | Supplements | Kindly provided by |
---|---|---|---|---|
2102EP | Embryonal carcinoma | DMEM (1x) + GlutaMAX-I | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | Dr. Christoph Oing, Department of Oncology, Hematology and Bone Marrow Transplantation with Section of Pneumology, Mildred Scheel Cancer Career Center HaTriCs4, University Cancer Center Hamburg, Hamburg, Germany |
BeWo | Choriocarcinoma | DMEM/F-12, GlutaMAX | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | ATCC, #CCL-98 |
JAR | Choriocarcinoma | DMEM (1x) + GlutaMAX-I | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | ATCC, #HTB-144 |
JEG-3 | Choriocarcinoma | DMEM (1x) + GlutaMAX-I | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | ATCC, #HTB-36 |
NCCIT | Embryonal carcinoma | RPMI Medium 1640 (1x) | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | Dr. Christoph Oing, Department of Oncology, Hematology and Bone Marrow Transplantation with Division of Pneumology, Mildred Scheel Cancer Career Center HaTriCs4, University Cancer Center Hamburg, Hamburg, Germany |
NT2/D1 | Embryonal carcinoma | DMEM (1x) + GlutaMAX-I | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | Dr. Christoph Oing, Department of Oncology, Hematology and Bone Marrow Transplantation with Division of Pneumology, Mildred Scheel Cancer Career Center HaTriCs4, University Cancer Center Hamburg, Hamburg, Germany |
TCam-2 | Seminoma | RPMI Medium 1640 (1x) | 10% FBS, 1% P/S (10,000 U), 1% L-Glutamin (200 mM) | Dr Janet Shipley, Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom |
qRT-PCR analysis
Gene | Forward primer | Reverse primer | Tm | Cycles |
---|---|---|---|---|
ACTB | CCATCATGAAGTGTGACGTGG | GTCCGCCTAGAAGCATTTGCG | 60 °C | 45 |
CD9 | CCTGCTGTTCGGATTTAACTTCA | TGGTCTGAGAGTCGAATCGGA | 60 °C | 45 |
CDX2 | GACGTGAGCATGTACCCTAGC | GCGTAGCCATTCCAGTCCT | 60 °C | 45 |
ELF5 | TAGGGAACAAGGAATTTTTCGGG | GTACACTAACCTTCGGTCAACC | 60 °C | 45 |
EOMES | GTGCCCACGTCTACCTGTG | CCTGCCCTGTTTCGTAATGAT | 60 °C | 45 |
GAPDH | TGCCAAATATGATGACATCAAGAA | GGAGTGGGTGTCGCTGTTG | 60 °C | 45 |
GATA3 | TCATTAAGCCCAAGCGAAGG | GTCCCCATTGGCATTCCTC | 60 °C | 45 |
hCG | AACACCCCTCACTCCCTGTCT | ATGCTCAGCAGCAGCAACA | 60 °C | 45 |
HLA-G | TTGCTGGCCTGGTTGTCCTT | TTGCCACTCAGTCCCACACAG | 60 °C | 45 |
KRT7 | TGGAGGACTTCAAGAATAAGTACGAA | TCATGTAGGCAGCATCCACATC | 60 °C | 45 |
MMP2 | TACAGGATCATTGGCTACACACC | GGTCACATCGCTCCAGACT | 60 °C | 45 |
PLAA | ACTGGCGAGTGTCTTGAAGTA | GCTGTTGTCACAAAGTCTCTACA | 60 °C | 45 |
PRAME | CGTAGACTCCTCCTCTCCCACAT | TGGGCGATATACTGCTCTTCCT | 60 °C | 45 |
SOX17 | GATGCGGGATACGCCAGTGAC | GCTCTGCCTCCTCCACGAAG | 60 °C | 45 |
SOX2 | ATGCACCGCTACGACGRGA | CTTTTGCACCCCTCCCATT | 60 °C | 45 |
TEAD4 | TGATGCAGAGGGTGTATGGA | GATCAGCTCATTCCGACCAT | 60 °C | 45 |
TFAP2C | GGCCCAGCAACTGTGTAAAGA | GCAGTTCTGTATGTTCGTCTCCAA | 60 °C | 45 |
Immunohistochemistry
Antibodies | Company | Order No | Dilution | Application |
---|---|---|---|---|
SALL4 | CellMarque | 385 M | 1/100 | IHC |
OCT3/4 | Dako | IR09261-2 | RTU | IHC |
D2-40 | Dako | IR072 | RTU | IHC |
SOX17 | Sigma/Merck | ZRB1345 | 1/500 | IHC |
GATA3 | CellMarque | 390 M | 390 M | IHC |
SOX2 | CellMarque | 371R | RTU | IHC |
hCG | Dako | IR50861-2 | RTU | IHC |
p63 | Dako | IR66261-2 | RTU | IHC |
CDX-2 | Dako | IR08061-2 | RTU | IHC |
GPC3 | DCS | GI829R06 | RTU | IHC |
FOXA2 | Invitrogen | MA5-15542 | 1:300 | IHC |
In silico analyses
Results
Patients
Characteristics | Absolute number of patients (n = 10) |
---|---|
Median serum hCG (U/L) | 53556 (range 1224–40909) |
UICC stage | |
I | 1 |
II | 4 |
III | 5 |
IV | 0 |
IGCCCG classification | |
good prognosis | 3 |
Intermediate prognosis | 6 |
First line therapy | |
cisplatin, etoposide, bleomycin (BEP) | 6 |
cisplatin, etoposide (CE) | 1 |
cisplatin, etoposide, ifosphamide (VIP) | 1 |
Radiotherapy | 1 |
Average size of the tumor | 6.8 cm |