Body of text
Virus/sequence id | 1 | 2 | 3 | 4 | 5 | 6 | 1 | 2 | 3 | 4 | 5 | 6 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ORF 1 | ORF 2 | |||||||||||||
1 | RMV strain FSHS (JQ319720.1) | 100 | 96 | 91 | 91 |
85
|
79
| 100 | 97 | 91 | 92 |
86
|
80
| 1 |
2 | RMV strain NZ-439 (HQ667978.1) |
98
| 100 | 89 | 89 | 87 | 79 |
99
| 100 | 90 | 91 | 87 | 80 | 2 |
3 | RMV strain Kons. 1105 (HQ667979.1) |
97
|
96
| 100 | 91 | 86 | 79 |
98
|
97
| 100 | 92 | 86 | 80 | 3 |
4 | RMV strain Actinidia-AC (GQ401365.1) |
97
|
96
|
98
| 100 | 86 | 79 |
98
|
97
|
98
| 100 | 86 | 80 | 4 |
5 | TVCV strain OSU (U03387.1) |
94
|
95
|
94
|
94
| 100 | 80 |
94
|
95
|
94
|
94
| 100 | 82 | 5 |
6 | YoMV (U30944.1) |
88
|
88
|
88
|
88
|
87
| 100 |
89
|
89
|
90
|
90
|
89
| 100 | 6 |
ORF 3 | ORF 4 | |||||||||||||
1 | RMV strain FSHS (JQ319720.1) | 100 | 99 | 93 | 93 |
86
|
79
| 100 | 99 | 96 | 96 |
88
|
83
| 1 |
2 | RMV strain NZ-439 (HQ667978.1) |
99
| 100 | 94 | 93 | 87 | 79 |
100
| 100 | 97 | 96 | 89 | 83 | 2 |
3 | RMV strain Kons. 1105 (HQ667979.1) |
98
|
99
| 100 | 92 | 86 | 79 |
99
|
99
| 100 | 96 | 90 | 85 | 3 |
4 | RMV strain Actinidia-AC (GQ401365.1) |
97
|
97
|
97
| 100 | 87 | 79 |
99
|
99
|
99
| 100 | 89 | 83 | 4 |
5 | TVCVstrain OSU (U03387.1) |
87
|
88
|
87
|
88
| 100 | 81 |
91
|
91
|
92
|
90
| 100 | 86 | 5 |
6 | YoMV (U30944.1) |
80
|
81
|
80
|
82
|
83
| 100 |
89
|
89
|
89
|
88
|
88
| 100 | 6 |
1 | 2 | 3 | 4 | 5 | 6 | 1 | 2 | 3 | 4 | 5 | 6 |
Parental isolate | Break points | ||||||
---|---|---|---|---|---|---|---|
Method | Recombinant | Major | Minor | Beginning | Ending | Average P-value | |
Genome | RDP | RMV FSHS | RMV NZ-439 | RMV Actinidia-AC | 1906 | 2564 | 5×10-26
|
GeneConv |
”
|
”
|
”
| 2148 | 2479 | 5×10-10
| |
Bootscan |
”
|
”
|
”
| 1905 | 2564 | 8×10-23 − 5×10-22
| |
MaxChi |
”
|
”
|
”
| 1906 | 2564 | 3×10-17 − 8×10-14
| |
Chimaera |
”
|
”
|
”
| 1926 | 2558 | 1×10-06 − 3×10-05
| |
SciScan |
”
|
”
|
”
| 2148 | 2414 | 1×10-10 − 6×10-10
| |
3Seq |
”
|
”
|
”
| 1926 | 2558 | 2×10-21 − 5×10-06
| |
ORF 1-2 | RDP | RMV FSHS | RMV NZ-439 | RMV Actinidia-AC | 1839−1858 | 2498 | 5×10-23 − 9×10-20
|
GeneConv |
”
|
”
|
”
| 1839 | 2498 | 8×10-11 − 3×10-08
| |
Bootscan |
”
|
”
|
”
| 1839 | 2498 | 3×10-22 − 2×10-18
| |
MaxChi |
”
|
”
|
”
| 1839 | 2498 | 6×10-18 − 3×10-12
| |
Chimaera |
”
|
”
|
”
| 1839 | 2498 | 2×10-16 − 1×10-02
| |
SciScan |
”
|
”
|
”
| 1807−1862 | 2461−2522 | 3×10-11 − 4×10-10
| |
3Seq |
”
|
”
|
”
| 1839 | 2498 | 2×10-22 − 8×10-04
| |
ORF 3 | No recombination | ||||||
ORF 4 | No recombination |