Skip to main content
Erschienen in: Archives of Virology 4/2020

17.02.2020 | Annotated Sequence Record

Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Botryosphaeria dothidea

verfasst von: Wenyi Liu, Du Hai, Fan Mu, Xiaojing Yu, Yingtong Zhao, Bangling He, Jiatao Xie, Daohong Jiang, Huixiang Liu

Erschienen in: Archives of Virology | Ausgabe 4/2020

Einloggen, um Zugang zu erhalten

Abstract

A novel virus, Botryosphaeria dothidea fusarivirus 1 (BdFV1), was isolated from a fungal strain, SDAU11-86 of Botryosphaeria dothidea, and its complete genome sequence was determined. BdFV1 has a single-stranded positive-sense (+ssRNA) genome with 6,179 nucleotides, excluding the poly(A) tail. The genome of BdFV1 contains two putative open reading frames (ORFs). The first ORF encodes a large polyprotein of 1,544 amino acids (aa) with conserved RNA-dependent RNA polymerase and viral helicase domains. The second ORF encodes a putative 481-aa protein with unknown function. Sequence comparisons and phylogenetic analysis suggested that BdFV1 is a novel mycovirus belonging to the newly proposed family “Fusariviridae”. This is the first report of a +ssRNA mycovirus in B. dothidea.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Ghabrial SA, Castón JR, Jiang D et al (2015) 50-plus years of fungal viruses. Virology 479:356–368CrossRef Ghabrial SA, Castón JR, Jiang D et al (2015) 50-plus years of fungal viruses. Virology 479:356–368CrossRef
2.
Zurück zum Zitat Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Ann Rev Phytopathol 52:45–68CrossRef Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Ann Rev Phytopathol 52:45–68CrossRef
3.
Zurück zum Zitat Donaire L, Pagán I, Ayllón MA (2016) Characterization of Botrytis cinerea negative-stranded RNA virus 1, a new mycovirus related to plant viruses, and a reconstruction of host pattern evolution in negative-sense ssRNA viruses. Virology 499:212–218CrossRef Donaire L, Pagán I, Ayllón MA (2016) Characterization of Botrytis cinerea negative-stranded RNA virus 1, a new mycovirus related to plant viruses, and a reconstruction of host pattern evolution in negative-sense ssRNA viruses. Virology 499:212–218CrossRef
4.
Zurück zum Zitat Liu L, Xie J, Cheng J et al (2014) Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses. Proc Natl Acad Sci 111(33):12205–12210CrossRef Liu L, Xie J, Cheng J et al (2014) Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses. Proc Natl Acad Sci 111(33):12205–12210CrossRef
5.
Zurück zum Zitat Marzano SYL, Nelson BD, Ajayi-Oyetunde O et al (2016) Identification of diverse mycoviruses through metatranscriptomics characterization of the viromes of five major fungal plant pathogens. J Virol 90(15):6846–6863CrossRef Marzano SYL, Nelson BD, Ajayi-Oyetunde O et al (2016) Identification of diverse mycoviruses through metatranscriptomics characterization of the viromes of five major fungal plant pathogens. J Virol 90(15):6846–6863CrossRef
6.
Zurück zum Zitat Mu F, Xie J, Cheng S et al (2018) Virome characterization of a collection of S. sclerotiorum from Australia. Front Microbiol 8:2540CrossRef Mu F, Xie J, Cheng S et al (2018) Virome characterization of a collection of S. sclerotiorum from Australia. Front Microbiol 8:2540CrossRef
7.
Zurück zum Zitat Wang L, He H, Wang S et al (2018) Evidence for a novel negative-stranded RNA mycovirus isolated from the plant pathogenic fungus Fusarium graminearum. Virology 518:232–240CrossRef Wang L, He H, Wang S et al (2018) Evidence for a novel negative-stranded RNA mycovirus isolated from the plant pathogenic fungus Fusarium graminearum. Virology 518:232–240CrossRef
8.
Zurück zum Zitat Yu X, Li B, Fu Y et al (2010) A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc Natl Acad Sci 107(18):8387–8392CrossRef Yu X, Li B, Fu Y et al (2010) A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc Natl Acad Sci 107(18):8387–8392CrossRef
9.
Zurück zum Zitat King AMQ et al (2011) Virus taxonomy: ninth report of the International Committee on Taxonomy of viruses, vol 9. Elsevier, Amsterdam King AMQ et al (2011) Virus taxonomy: ninth report of the International Committee on Taxonomy of viruses, vol 9. Elsevier, Amsterdam
10.
Zurück zum Zitat Li K, Zheng D, Cheng J et al (2016) Characterization of a novel Sclerotinia sclerotiorum RNA virus as the prototype of a new proposed family within the order Tymovirales. Virus Res 219:92–99CrossRef Li K, Zheng D, Cheng J et al (2016) Characterization of a novel Sclerotinia sclerotiorum RNA virus as the prototype of a new proposed family within the order Tymovirales. Virus Res 219:92–99CrossRef
11.
Zurück zum Zitat Hamid M, Xie J, Wu S et al (2018) A novel deltaflexivirus that infects the plant fungal pathogen, Sclerotinia sclerotiorum, can be transmitted among host vegetative incompatible strains. Viruses. 10(6):295CrossRef Hamid M, Xie J, Wu S et al (2018) A novel deltaflexivirus that infects the plant fungal pathogen, Sclerotinia sclerotiorum, can be transmitted among host vegetative incompatible strains. Viruses. 10(6):295CrossRef
12.
Zurück zum Zitat Zhang R, Liu S, Chiba S et al (2014) A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses. Front Microbiol 5:360PubMedPubMedCentral Zhang R, Liu S, Chiba S et al (2014) A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses. Front Microbiol 5:360PubMedPubMedCentral
13.
Zurück zum Zitat Picarelli MASC, Forgia M, Rivas EB et al (2019) Extreme diversity of mycoviruses present in isolates of Rhizoctonia solani AG2-2 LP from Zoysia japonica from Brazil. Fronti Cell Infect Microbiol 9:244CrossRef Picarelli MASC, Forgia M, Rivas EB et al (2019) Extreme diversity of mycoviruses present in isolates of Rhizoctonia solani AG2-2 LP from Zoysia japonica from Brazil. Fronti Cell Infect Microbiol 9:244CrossRef
14.
Zurück zum Zitat Dissanayake AJ, Phillips AJL, Li XH et al (2016) Botryosphaeriaceae: current status of genera and species. Mycosphere. 7(7):1001–1073CrossRef Dissanayake AJ, Phillips AJL, Li XH et al (2016) Botryosphaeriaceae: current status of genera and species. Mycosphere. 7(7):1001–1073CrossRef
15.
Zurück zum Zitat Marsberg A, Kemler M, Jami F et al (2017) Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Mol Plant Pathol 18(4):477–488CrossRef Marsberg A, Kemler M, Jami F et al (2017) Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Mol Plant Pathol 18(4):477–488CrossRef
16.
Zurück zum Zitat Tang W, Ding Z, Zhou ZQ et al (2012) Phylogenetic and pathogenic analyses show that the causal agent of apple ring rot in China is Botryosphaeria dothidea. Plant Dis 96(4):486–496CrossRef Tang W, Ding Z, Zhou ZQ et al (2012) Phylogenetic and pathogenic analyses show that the causal agent of apple ring rot in China is Botryosphaeria dothidea. Plant Dis 96(4):486–496CrossRef
17.
Zurück zum Zitat Xu C, Wang C, Ju L et al (2015) Multiple locus genealogies and phenotypic characters reappraise the causal agents of apple ring rot in China. Fungal Divers 71(1):215–231CrossRef Xu C, Wang C, Ju L et al (2015) Multiple locus genealogies and phenotypic characters reappraise the causal agents of apple ring rot in China. Fungal Divers 71(1):215–231CrossRef
18.
Zurück zum Zitat Zhai L, Zhang M, Lv G et al (2014) Biological and molecular characterization of four Botryosphaeria species isolated from pear plants showing stem wart and stem canker in China. Plant Dis 98(6):716–726CrossRef Zhai L, Zhang M, Lv G et al (2014) Biological and molecular characterization of four Botryosphaeria species isolated from pear plants showing stem wart and stem canker in China. Plant Dis 98(6):716–726CrossRef
19.
Zurück zum Zitat Yan JY, Xie Y, Zhang W et al (2013) Species of Botryosphaeriaceae involved in grapevine dieback in China. Fungal Divers 61(1):221–236CrossRef Yan JY, Xie Y, Zhang W et al (2013) Species of Botryosphaeriaceae involved in grapevine dieback in China. Fungal Divers 61(1):221–236CrossRef
20.
Zurück zum Zitat Liu X, Liu HX, Han XL et al (2018) First Report of Botryosphaeria dothidea causing fruit rot of Rellowhorn (Xanthoceras sorbifolium) in China. Plant Dis 102(8):1662CrossRef Liu X, Liu HX, Han XL et al (2018) First Report of Botryosphaeria dothidea causing fruit rot of Rellowhorn (Xanthoceras sorbifolium) in China. Plant Dis 102(8):1662CrossRef
21.
Zurück zum Zitat Liu HX, Liang J, Zhao JP et al (2007) Study on the etiology of pomegranate canker diseases. Sci Silvae Sin 04:54–58 Liu HX, Liang J, Zhao JP et al (2007) Study on the etiology of pomegranate canker diseases. Sci Silvae Sin 04:54–58
22.
Zurück zum Zitat Zhang YL, Liu HX, Xu YY et al (2018) The tea brown blight disease caused by co-infection of Glomerella cingulata f. sp. camelliae and Botryosphaeria dothidea. J Tea Sci 38(01):87–93 Zhang YL, Liu HX, Xu YY et al (2018) The tea brown blight disease caused by co-infection of Glomerella cingulata f. sp. camelliae and Botryosphaeria dothidea. J Tea Sci 38(01):87–93
23.
Zurück zum Zitat Kang L, Hao H, Yang Z et al (2009) The advances in the research of apple ring rot. Chin Agric Sci Bull 25(09):188–191 (in Chinese) Kang L, Hao H, Yang Z et al (2009) The advances in the research of apple ring rot. Chin Agric Sci Bull 25(09):188–191 (in Chinese)
24.
Zurück zum Zitat Wang LP, Jiang JJ, Wang YF et al (2014) Hypovirulence of the phytopathogenic fungus Botryosphaeria dothidea: association with a coinfecting chrysovirus and a partitivirus. J Virol 88(13):7517–7527CrossRef Wang LP, Jiang JJ, Wang YF et al (2014) Hypovirulence of the phytopathogenic fungus Botryosphaeria dothidea: association with a coinfecting chrysovirus and a partitivirus. J Virol 88(13):7517–7527CrossRef
25.
Zurück zum Zitat Zhai L, Xiang J, Zhang M et al (2016) Characterization of a novel double-stranded RNA mycovirus conferring hypovirulence from the phytopathogenic fungus Botryosphaeria dothidea. Virology. 493:75–85CrossRef Zhai L, Xiang J, Zhang M et al (2016) Characterization of a novel double-stranded RNA mycovirus conferring hypovirulence from the phytopathogenic fungus Botryosphaeria dothidea. Virology. 493:75–85CrossRef
26.
Zurück zum Zitat Ding Z, Zhou T, Guo LY (2017) Characterization of a novel strain of Botryosphaeria dothidea chrysovirus 1 from the apple white rot pathogen Botryosphaeria dothidea. Arch Virol 162(7):2097–2102CrossRef Ding Z, Zhou T, Guo LY (2017) Characterization of a novel strain of Botryosphaeria dothidea chrysovirus 1 from the apple white rot pathogen Botryosphaeria dothidea. Arch Virol 162(7):2097–2102CrossRef
27.
Zurück zum Zitat Zhai L, Hong N, Zhang M et al (2015) Complete dsRNA sequence of a novel victorivirus isolated from the pear stem wart fungus Botryosphaeria dothidea. Arch Virol 160(2):613–616CrossRef Zhai L, Hong N, Zhang M et al (2015) Complete dsRNA sequence of a novel victorivirus isolated from the pear stem wart fungus Botryosphaeria dothidea. Arch Virol 160(2):613–616CrossRef
28.
Zurück zum Zitat Zhai L, Yang M, Zhang M et al (2019) Characterization of a Botybirnavirus conferring hypovirulence in the phytopathogenic fungus Botryosphaeria dothidea. Viruses. 11(3):266CrossRef Zhai L, Yang M, Zhang M et al (2019) Characterization of a Botybirnavirus conferring hypovirulence in the phytopathogenic fungus Botryosphaeria dothidea. Viruses. 11(3):266CrossRef
29.
Zurück zum Zitat Marais A, Nivault A, Faure C et al (2018) Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Neofusicoccum luteum. Arch Virol 163(2):559–562CrossRef Marais A, Nivault A, Faure C et al (2018) Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Neofusicoccum luteum. Arch Virol 163(2):559–562CrossRef
30.
Zurück zum Zitat Choi YG, Randles JW (1997) Microgranular cellulose improves dsRNA recovery from plant nucleic acid extracts. BioTechniques. 23(4):610–611CrossRef Choi YG, Randles JW (1997) Microgranular cellulose improves dsRNA recovery from plant nucleic acid extracts. BioTechniques. 23(4):610–611CrossRef
31.
Zurück zum Zitat Cock PJA, Fields CJ, Goto N et al (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res 38(6):1767–1771CrossRef Cock PJA, Fields CJ, Goto N et al (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res 38(6):1767–1771CrossRef
32.
Zurück zum Zitat Hansen KD, Brenner SE, Dudoit S (2010) Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 38(12):e131–e131CrossRef Hansen KD, Brenner SE, Dudoit S (2010) Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 38(12):e131–e131CrossRef
33.
Zurück zum Zitat Jiang L, Schlesinger F, Davis CA et al (2011) Synthetic spike-in standards for RNA-seq experiments. Genome Res 21(9):1543–1551CrossRef Jiang L, Schlesinger F, Davis CA et al (2011) Synthetic spike-in standards for RNA-seq experiments. Genome Res 21(9):1543–1551CrossRef
34.
Zurück zum Zitat Lambden PR, Cooke SJ, Caul EO et al (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66(3):1817–1822CrossRef Lambden PR, Cooke SJ, Caul EO et al (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66(3):1817–1822CrossRef
Metadaten
Titel
Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Botryosphaeria dothidea
verfasst von
Wenyi Liu
Du Hai
Fan Mu
Xiaojing Yu
Yingtong Zhao
Bangling He
Jiatao Xie
Daohong Jiang
Huixiang Liu
Publikationsdatum
17.02.2020
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 4/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-020-04554-1

Weitere Artikel der Ausgabe 4/2020

Archives of Virology 4/2020 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.