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Erschienen in: Archives of Virology 9/2016

10.06.2016 | Brief Report

Molecular identification and biological characterization of a new potyvirus in lettuce

verfasst von: Marina Ciuffo, Marco Mammella, Marta Vallino, Piero Caciagli, Massimo Turina

Erschienen in: Archives of Virology | Ausgabe 9/2016

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Abstract

A potyvirus causing necrosis and leaf distortion on lettuce was found in the Lazio region of Italy. Host range analysis showed its ability to infect only Chenopodium quinoa and C. amaranticolor in addition to some lettuce cultivars. The virus could be transmitted by aphids of the species Myzus persicae. The complete 9829-nt genome was characterized. BLAST analysis of sequence of the complete encoded polyprotein showed that the most closely related virus is asparagus virus 1, with 52 % amino acid sequence identity. These results suggest that this virus should be considered a member of a new species in the genus Potyvirus.
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Literatur
1.
Zurück zum Zitat Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487CrossRefPubMed Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487CrossRefPubMed
2.
Zurück zum Zitat Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479CrossRefPubMed Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479CrossRefPubMed
3.
Zurück zum Zitat Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT (2011) Family Potyviridae. In: King AMQ, Adams MJ, Cartens EB, Lefkowitz EJ (eds) Virus Taxonomy Classification and nomenclature of viruses, Ninth Report of the International committee on Taxonomy of Viruses. Elsevier Accademic Press, San Diego, pp 1069–1089 Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT (2011) Family Potyviridae. In: King AMQ, Adams MJ, Cartens EB, Lefkowitz EJ (eds) Virus Taxonomy Classification and nomenclature of viruses, Ninth Report of the International committee on Taxonomy of Viruses. Elsevier Accademic Press, San Diego, pp 1069–1089
4.
Zurück zum Zitat Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed
5.
Zurück zum Zitat Blockus S, Lesker T, Maiss E (2015) Complete genome sequences of two biologically distinct isolates of Asparagus virus 1. Arch Virol 160:569–572CrossRefPubMed Blockus S, Lesker T, Maiss E (2015) Complete genome sequences of two biologically distinct isolates of Asparagus virus 1. Arch Virol 160:569–572CrossRefPubMed
6.
Zurück zum Zitat Jagger IC (1921) A transmissible mosaic disease of lettuce. J Agricult Res 20:737–739 Jagger IC (1921) A transmissible mosaic disease of lettuce. J Agricult Res 20:737–739
7.
Zurück zum Zitat Campanella JJ, Bitincka L, Smalley J (2003) MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences. BMC Bioinform 4:29CrossRef Campanella JJ, Bitincka L, Smalley J (2003) MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences. BMC Bioinform 4:29CrossRef
8.
9.
Zurück zum Zitat Ciuffo M, Testa M, Lenzi R, Turina M (2011) Ranunculus latent virus: a strain of Artichoke latent virus or a new macluravirus infecting artichoke? Arch Virol 156:1053–1057CrossRefPubMed Ciuffo M, Testa M, Lenzi R, Turina M (2011) Ranunculus latent virus: a strain of Artichoke latent virus or a new macluravirus infecting artichoke? Arch Virol 156:1053–1057CrossRefPubMed
10.
Zurück zum Zitat Ciuffo M, Pacifico D, Margaria P, Turina M (2014) A new ilarvirus isolated from Viola × wittrockiana and its detection in pansy germoplasm by qRT-PCR. Arch Virol 159:561–565CrossRefPubMed Ciuffo M, Pacifico D, Margaria P, Turina M (2014) A new ilarvirus isolated from Viola × wittrockiana and its detection in pansy germoplasm by qRT-PCR. Arch Virol 159:561–565CrossRefPubMed
11.
Zurück zum Zitat Dinant S, Lot H (1992) Lettuce mosaic virus. Plant Pathol 41:528–542CrossRef Dinant S, Lot H (1992) Lettuce mosaic virus. Plant Pathol 41:528–542CrossRef
13.
Zurück zum Zitat Felsenstein J (1985) Confidence limits on phylogenies with a molecular clock. Syst Zool 34:152–161CrossRef Felsenstein J (1985) Confidence limits on phylogenies with a molecular clock. Syst Zool 34:152–161CrossRef
14.
Zurück zum Zitat German-Retana S, Walter J, Le Gall O (2008) Lettuce mosaic virus: from pathogen diversity to host interactors. Mol Plant Pathol 9:127–136CrossRefPubMed German-Retana S, Walter J, Le Gall O (2008) Lettuce mosaic virus: from pathogen diversity to host interactors. Mol Plant Pathol 9:127–136CrossRefPubMed
15.
Zurück zum Zitat Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153:25–36CrossRefPubMed Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153:25–36CrossRefPubMed
16.
Zurück zum Zitat Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25:1307–1320CrossRefPubMed Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Mol Biol Evol 25:1307–1320CrossRefPubMed
17.
Zurück zum Zitat Lebeda A, Kristkova E, Kitner M, Mieslerova B, Jemelkova M, Pink DAC (2014) Wild Lactuca species, their genetic diversity, resistance to diseases and pests, and exploitation in lettuce breeding. Eur J Plant Pathol 138:597–640CrossRef Lebeda A, Kristkova E, Kitner M, Mieslerova B, Jemelkova M, Pink DAC (2014) Wild Lactuca species, their genetic diversity, resistance to diseases and pests, and exploitation in lettuce breeding. Eur J Plant Pathol 138:597–640CrossRef
18.
Zurück zum Zitat Moreno A, Fereres A (2012) Virus diseases in lettuce in the Mediterranean Basin. Adv Virus Res 84:247–288CrossRefPubMed Moreno A, Fereres A (2012) Virus diseases in lettuce in the Mediterranean Basin. Adv Virus Res 84:247–288CrossRefPubMed
19.
Zurück zum Zitat Michael Davis R, Subbarao K, Raid R, Kurtz E (1997) Compendium of lettuce disease. APS Press, USA Michael Davis R, Subbarao K, Raid R, Kurtz E (1997) Compendium of lettuce disease. APS Press, USA
20.
Zurück zum Zitat Robbins MA, Witsenboer H, Michelmore RW, Laliberte JF, Fortin MG (1994) Genetic-mapping of Turnip mosaic virus resistance in Lactuca sativa. Theor Appl Genet 89:583–589CrossRefPubMed Robbins MA, Witsenboer H, Michelmore RW, Laliberte JF, Fortin MG (1994) Genetic-mapping of Turnip mosaic virus resistance in Lactuca sativa. Theor Appl Genet 89:583–589CrossRefPubMed
21.
Zurück zum Zitat Sanches MM, De Marchi BR, Spadotti DM, Nozaki DN, Pavan MA, Krause-Sakate R (2014) Biological and molecular characterisation of Bidens mosaic virus supports its assignment as a member of a distinct species in the genus Potyvirus. Arch Virol 159:2181–2183PubMed Sanches MM, De Marchi BR, Spadotti DM, Nozaki DN, Pavan MA, Krause-Sakate R (2014) Biological and molecular characterisation of Bidens mosaic virus supports its assignment as a member of a distinct species in the genus Potyvirus. Arch Virol 159:2181–2183PubMed
22.
Zurück zum Zitat Swallow WH (1985) Group testing for estimating infection rates and probabilities of disease transmission. Phytopathology 75:882–889CrossRef Swallow WH (1985) Group testing for estimating infection rates and probabilities of disease transmission. Phytopathology 75:882–889CrossRef
23.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRefPubMedPubMedCentral
24.
Zurück zum Zitat Turina M, Ciuffo M, Lenzi R, Rostagno L, Mela L, Derin E, Palmano S (2006) Characterization of four viral species belonging to the family Potyviridae isolated from Ranunculus asiaticus. Phytopathology 96:560–566CrossRefPubMed Turina M, Ciuffo M, Lenzi R, Rostagno L, Mela L, Derin E, Palmano S (2006) Characterization of four viral species belonging to the family Potyviridae isolated from Ranunculus asiaticus. Phytopathology 96:560–566CrossRefPubMed
25.
Zurück zum Zitat Yan ZL, Song LM, Zhou T, Zhang YJ, Li MF, Li HF, Fan ZF (2010) Identification and molecular characterization of a new potyvirus from Panax notoginseng. Arch Virol 155:949–957CrossRefPubMed Yan ZL, Song LM, Zhou T, Zhang YJ, Li MF, Li HF, Fan ZF (2010) Identification and molecular characterization of a new potyvirus from Panax notoginseng. Arch Virol 155:949–957CrossRefPubMed
Metadaten
Titel
Molecular identification and biological characterization of a new potyvirus in lettuce
verfasst von
Marina Ciuffo
Marco Mammella
Marta Vallino
Piero Caciagli
Massimo Turina
Publikationsdatum
10.06.2016
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 9/2016
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2920-x

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