Introduction
Disruption of the fetal circulation by congenital heart disease (CHD) can result in injury to critical organs and possible fetal death [
1]. In such cases, premature delivery with subsequent intervention may be recommended, but this option must be weighed against the risks of prematurity such as infection, impaired organ development and cognitive delay. Emerging treatments intended to improve the fetal circulation include drugs provided to the fetus through the maternal circulation, maternal oxygen supplementation, and percutaneous surgical correction of fetal cardiovascular anatomy [
2‐
4]. Selecting the most appropriate therapy and monitoring its efficacy, however, requires an accurate assessment of the fetal circulation.
Fetal cardiovascular magnetic resonance (CMR) methods have recently been developed to assess fetal anatomy and blood flow in late gestation using steady state free precession and flow sensitive phase contrast CMR (PC-CMR). Using these methods, fetal blood flow and oxygen delivery have been measured in a variety of fetal CHD including left-heart disease and transposition of the great arteries [
5,
6]. However, quantification of fetal flow by PC-CMR remains challenging. The primary hurdles are:
1)
Fetal vascular and cardiac structures are small with complex morphology. To quantify flow accurately in the heart and major vessels, a high spatial resolution (≤ 1 × 1 mm2) is beneficial.
2)
Fetal heart rates are high (~ 110–180 bpm), requiring acquisitions at high temporal resolution. Based on adult studies using PC-CMR, a minimum of 15 cardiac phases are required to resolve blood flow, which corresponds to a temporal resolution of approximately 30 ms in fetal applications [
7].
3)
Motion from maternal respiration or gross fetal movements will corrupt portions of the data. Thus, the fetal PC-CMR acquisition and analysis must monitor and correct for these motions.
4)
Conventional electrocardiogram (ECG) or peripheral pulse gating methods cannot be used to synchronize fetal data acquisition and reconstruction [
8]. Thus, a method for extracting this signal non-invasively is needed.
Previous PC-CMR studies of fetal blood flow have included Cartesian sampling with retrospective gating [
9‐
11]. However, these were sensitive only to flow through the prescribed slice and did not correct for motion, often requiring repeat acquisitions to avoid image artifacts. Here, we propose, validate, and demonstrate the feasibility of a novel PC-CMR approach for measuring complex fetal hemodynamics that compensates for motion while meeting the spatiotemporal demands of fetal applications. This builds on previous work using radial golden-angle sampling with compressed sensing (CS) for fetal CMR [
12,
13]. A strength of the golden-angle approach is its ability to provide real-time reconstructions for motion compensation and retrospective gating [
12,
13]. We adopt a similar approach but incorporate multi-dimensional flow encoding for a single-slice acquisition, hereafter referred to as “single slice vector flow”. By acquiring all three velocity components, complex flows (such as those passing through the fetal heart) may be visualized and measured. The theory behind the sampling and reconstruction of such data is described in the next section, followed by an experimental validation of the method in a flow phantom and 5 healthy adult subjects. Finally, feasibility of the method is demonstrated in scans of complex blood flow through the fetal heart and major fetal vessels of 5 healthy pregnancies.
Methods
All experiments were performed using a commercial 3 T CMR system (Prisma
FIT, Siemens Healthineers, Erlangen, Germany). The radial PC-CMR approach described in the previous section was first validated in a phantom experiment and 5 healthy adult subjects. Its feasibility was then demonstrated in 5 healthy pregnancies. Acquisitions were performed using a gradient recalled echo (GRE) sequence with a multi-channel receiver coil. All acquisitions were performed as part of an ethically approved study, and informed consent was obtained from all subjects. All reconstructions were performed in MATLAB (MathWorks, Natick, Massachusetts, USA), modifying code originally developed by Lustig et al. and Otazo et al., and using conjugate gradient descent for optimization during CS reconstruction [
15,
16]. Computer specifications were: RAM 32GB, processor Intel® Core™ i7–6700 (3.40 GHz, 8 cores). NUFFT [
20] was performed on a GPU (Nvidia Geforce GTX 960, 2GB and 1024 CUDA cores). Motion compensation was based on the normalized mutual information, calculated with elastix (Image Sciences Institute, University Medical Center Ultrecht, The Netherlands) [
21].
PC-CMR acquisition protocol – Phantom
To validate the radial PC-CMR sequence, flow was measured in a phantom consisting of a computer-controlled pump connected to coiled tubing (10 mm diameter) positioned within the scanner. Flows measured using the proposed sampling strategy were compared to reference flows obtained using a conventional multi-dimensional flow encoded Cartesian PC-CMR sequence. Measurements were made along a double oblique plane to obtain velocity components along all three spatial dimensions. Constant flows (ranging from 10 to 60 mL/s) were measured in eight sections of the coiled tubing. Agreements between the radial and Cartesian measurements for the mean and peak spatial velocities across the cross-section of the tubing were quantified through linear regression for each velocity encoding dimension. Comparisons between radial and Cartesian PC-CMR measurements were made instead of validation against programmed flow for direct comparison of complex multidimensional flow vectors.
PC-CMR acquisition protocol – Adult
For validating MOG, flows were measured in healthy adults (25–30 years) using the proposed method. In three subjects, acquisitions were performed axially at the level of the bifurcation of the main pulmonary artery (MPA). In the remaining two subjects, a four-chamber view of the heart was acquired. Relevant imaging parameters are summarized in Table
1.
Table 1
PCMR imaging parameters
Subjects | A1, A2, A3, A4, A5 | P1, P2, P3, P4, P5 |
Flip Angle | 15o | 15o |
Field of View (mm2) | 256 × 256 | 256 × 256 |
Resolution (mm3) | 1 × 1 × 4 | 1 × 1 × 4 |
VENC (cm/s) | 150 | 80 (P1–3) 150 (P4–5) |
Number of Flow Encodes | 4 | 4 |
Spokes per Slice | 4000 (1000 per encode) | 3600–4800 (900–1200 per flow encode) |
TR / TE (ms) | 6.5 / 4.0 | 6.5 / 4.0 |
Scan Length (s) | 26 | 22–28 |
During acquisition of the radial PC-CMR data, pulse gating waveforms were recorded for later comparison with MOG-based gating. Two CINEs were reconstructed from the radial data (one with MOG and the other with pulse gating) and measured velocities were compared. To test reproducibility of the flow measurements and gating performance, scans were repeated three times consecutively in each subject.
PC-CMR acquisition protocol – Fetal
Five healthy pregnant women (subject identifiers P1-P5; gestational ages 32–36 weeks) were recruited and scanned under free breathing conditions using the proposed PC-CMR approach. In three subjects, four-chamber views of the fetal heart were prescribed (subjects P1, P4 and P5). In the two other subjects, standard three vessel views of the fetus were prescribed (subjects P2 and P3). The imaging parameters are summarized in Table
1.
Data analysis – Adults
Adult flow data, acquired using the radial PC-CMR acquisition, were reconstructed using the pipeline described in the Theory section and depicted in Fig.
2, but without the need for gross motion correction (Fig.
2b).
First, real-time series with four consecutive spokes per frame were reconstructed using regularization weights of 0.05 and 0.001 for temporal and spatial total variation respectively (temporal resolution of 26 ms; acceleration of 100, Fig.
2c). These images were used to detect the RR intervals for each acquisition, using MOG with an ROI placed over the heart and surrounding vasculature. Based on these RR intervals, retrospective CINE reconstructions were performed using CS (regularization weights: 0.01 for spatial total variation, 0.01 for complex difference and 0.05 for temporal Fourier transform) with the minimisation procedure alternating between flow compensation and flow encoding (Fig.
2d). This resulted in single slice vector flow measurements that were then corrected for background phase [
22].
The accuracy of the MOG-based reconstruction of radial PC-CMR data was evaluated based on two quantities. First, the retrospective gating signal obtained by MOG was compared with that from the recorded pulse gating log. Specifically, the timing error was defined as the standard deviation of the differences between the corresponding RR intervals from each method. Second, quantitative evaluation of the proposed sampling scheme was performed by running Wilcoxon signed rank test on and comparing Bland-Altman plots of the mean and the peak velocities between reconstructions from the MOG and the logged pulse-gated reconstructions. Agreement between the reconstructions was analyzed by looking at the interclass Pearson correlation coefficients (R) between the flow curves.
Data analysis – Fetal
Real-time frames for motion compensation were reconstructed using 32 consecutive spokes (temporal resolution of 208 ms; acceleration of 12) with CS (regularization weights: 0.05 for temporal total variation and 0.001 for spatial total variation). Motion compensation was performed on these real-time frames as described in the Theory. A second real-time reconstruction was then performed for gating, based on 4 consecutive spokes (temporal resolution of 26 ms; acceleration of 100) with CS (regularization weights: 0.05 for temporal total variation and 0.001 for spatial total variation). MOG was performed and the data was binned into 15 cardiac phases. The acceleration factor ranged between 5 and 12 in these final reconstructions, depending on the amount of data rejection due to through-plane motion. CINE reconstructions were performed using CS (regularization weights: 0.0025 for spatial total variation, 0.0025 for complex difference and 0.025 for temporal Fourier transform) with the minimisation procedure alternating between the flow compensation and flow encoding.
With the current pipeline, real-time reconstructions used for fetal motion compensation required approximately 5 min/slice and those used for gating required approximately 45 min/slice. Both reconstructions ran for 50 iterations. Image registration and MOG analysis each required approximately 10 min/slice. CINE reconstructions lasted approximately 30 min/slice with 80 iterations. Accounting for 2 min for manual ROI selections, the total processing time with this pipeline was approximately 102 min per slice.
Consistency in fetal reconstructions
As a simple test of the reproducibility of this acquisition and reconstruction, fetal data were acquired twice consecutively from one participant (P3). After reconstruction, pulsatile flows though the fetal aorta were measured. The consistency of these measurements was quantified based on the intraclass correlation coefficient (ICC) and the peak velocity error between the two flow curves.
Discussion
In this study, we devised an approach for quantifying multidimensional fetal blood flow. A golden angle radial sampling scheme with multidimensional flow encoding was developed whereby both the golden-angle radial trajectory and the velocity encoding direction were continuously updated in synchrony. Reconstruction of intermediate real-time images allowed for motion correction and gating, leading to CINE reconstruction and single slice vector flow maps at high spatial and temporal resolution. Validation of the proposed sequence was performed in a flow phantom and validation of the retrospective gating and CINE reconstruction was performed in healthy adult subjects. Feasibility of the approach was tested in healthy pregnancies. Through this approach, we have generated the first multidimensional PC-CMR visualizations of complex hemodynamics in the human fetal heart.
In clinical practice, ultrasound is the primary imaging modality for fetal anatomy and flow. However, ultrasound scanning is susceptible to artifact from acoustic shadowing, or low levels of amniotic fluid (oligohydramnios), particularly in late gestation. In cases where ultrasound examinations are insufficient, Fetal CMR provides complementary information which may improve management of at-risk pregnancies. Along with improved tissue contrast, CMR can measure fetal blood flow in arbitrary planes and quantify blood oxygen saturation and hematocrit [
27]. These measurements can provide a map of fetal flow and oxygen, helping us improve our understanding of how CHD affects fetal development, as well as the efficacy of CHD treatments.
A strength of the proposed approach is its ability to track motion in the real-time reconstructions and then correct for that motion in the acquired k-space data. Previous fetal PC-CMR studies have relied on lengthy Cartesian scans in which gross motion was evident only as significant artifact in the final images. When faced with obvious motion artifact, Cartesian scans are typically repeated. Our current work using radial PC-CMR demonstrated that periods of fetal through-plane motion can be identified and removed, and that residual in-plane motion from maternal breathing can be corrected. As a result, repeat measurements can be avoided, providing the vessel of interest remains in the slice plane for at least a portion of the scan.
Past implementations of fetal PC-CMR with MOG have used a simple two-parameter heart rate model. In this current work, a multiparameter MOG model was used instead, which accounts for variations in fetal heart rate throughout the acquisition. This multiparameter model was previously implemented and validated for fetal anatomical CMR [
17]. Here, the gating approach was validated for PC-CMR in adults and showed high accuracy when compared with pulse-gating RR intervals (timing error ~ 20 ms). Furthermore, flow curves obtained using this approach were highly correlated with those using pulse-gating (
R = 0.98). Finally, fetal flows obtained using this approach were consistent with those reported in the literature using through-plane Cartesian PC-CMR, and dynamic fetal cardiac structures were well visualized [
9,
10]. Alternative strategies for retrospective fetal cardiac gating have recently been published using self-gating [
28,
29] and iterative outlier rejection with cardiac synchronisation [
30], while prospective gating using an external ultrasound probe has also been demonstrated [
31].
In the proposed approach, two real-time reconstructions were performed with one at lower temporal resolution for motion correction of the acquired data and the other at higher temporal resolution for gating of the motion corrected data. Another approach would have been to perform one real-time reconstruction of the acquired data at the higher temporal resolution, and then to average frames together to improve image quality for motion correction. However, since CS is a non-linear process, such averaging is corrupted by structural noise which reduces accuracy of the registration. Another consideration would have been to combine the MOG and the CINE reconstruction steps. This would have avoided the need to reconstruct real-time images at high temporal resolution. However, this approach would have required CS in each iteration of the MOG optimization, resulting in a significant computational burden and impractical reconstruction times.
In this work, ROIs were set manually and in general, the reconstruction is robust to small deviations in ROI placement provided that the fetal chest is encompassed for motion correction and gating. An alternative approach proposed by Demesmaeker et al. 2017, uses the frequency information derived from the temporal Fourier transform of real-time reconstructions to automatically detect an ROI containing the fetal heart in anatomical images using a balanced steady state free precessionsequence [
32]. Translating this approach to the PC-CMR sequence used in this work may alleviate the need for manual steps in the reconstruction, strengthening the clinical feasibility of our reconstruction pipeline.
Previous PC-CMR studies of fetal blood flow have used Cartesian sampling [
9,
10], requiring relatively long scan times (~ 30 s for through-slice flows) at limited spatial resolution (1.25 × 1.25 × 5 mm
3). The proposed radial PCMR approach provides much higher spatial resolution (1 × 1 × 4 mm
3) and lower scan times, improving quantification and visualization of fetal flow by reducing partial volume effects. Further improvements may be achieved using more efficient sampling schemes, such as spiral PC-CMR [
33]. Regardless of the trajectory that is chosen, additional applications of the approach to multi-dimensional flow proposed in this work may include uncooperative postnatal subjects such as neonates or the elderly, where motion corruption can be problematic.
Despite the success of the proposed pipeline, there are limitations with fetal PC-CMR. First, our study was performed at 3 T whereas many clinical scanners are 1.5 T, and the reduced signal-to-noise ratio (SNR) at 1.5 T could affect the accuracy of the proposed pipeline. PCMR at earlier gestation demands even higher spatial resolution because fetal structures are less developed, further affecting SNR. Finally, coil coverage over the maternal abdomen will influence image quality, depending on fetal and maternal habitus. Collectively, these limitations will require designing coils targeted for pregnancy scans and re-optimising the parameters used in CS for the lower SNR.