Background
Musasi1 (Msi1) is an RNA binding protein essential during nervous system development. It is considered a stem cell marker whose expression has been found to be conserved across species from fly to human [
1]. In the mammalian postnatal brain, Msi1 is mainly expressed in cells that are believed to be the source of adult neural stem cells [
2] and seems to be critical for their maintenance and self-renewal capability [
1,
3,
4].
High levels of Msi1 have been reported in tumors such as medulloblastoma [
5,
6], glioma [
7,
8], astrocytoma [
9], retinoblastoma [
10] and colorectal adenoma [
11]. Indeed, a correlation between high levels of Msi1 expression and poor prognosis has been proposed for glioma and astrocytoma [
8,
9].
Two Msi1 direct targets have been characterized in mammals:
numb [
12] and
CDKN1A [
13]. Binding of Msi1 to specific motifs located in the 3' untranslated region (UTR) of these mRNAs seems to interfere with translation, thereby decreasing Numb and p21
WAF (also known as Cdkn1a) protein levels [
12,
13]. Numb is a regulator of three important pathways usually deregulated in cancer: Notch, Hedgehog and p53 (reviewed in [
14‐
17]). Numb represses Notch [
18] and Hedgehog [
19]. In addition, Numb has recently been shown to prevent degradation of the tumor suppressor p53 [
20]. The second known target of Msi1 is the cell cycle inhibitor p21
WAF. Therefore, it is plausible to surmise that by repressing translation of Numb and p21
WAF, high levels of Msi1 might promote aberrant cell proliferation and failure in differentiation and apoptosis.
We observed that the levels of MSI1 were elevated in Daoy neurospheres (high proliferative cultures) compared to monolayers (low proliferative cultures). This data suggested a potential role for Msi1 in promoting cancer cell proliferation in this medulloblastoma cell line. In order to test this hypothesis, we depleted Msi1 in Daoy cells by RNA interference. A significant reduction in soft agar growth (in vitro indicator of tumorigenicity) and neurosphere formation (surrogative measure of "stemness") were observed. We also identified a set of cell proliferation genes whose expression was significantly down-regulated after Msi1 shRNA-mediated knockdown. Thus our data suggested that Msi1 may promote cancer cell proliferation. We propose that Msi1 may maintain a pool of cancer cells with deregulated proliferative capabilities which may possibly serve as a source for future tumorigenic events. In this regard, Msi1 might be a positive regulator of tumor progression and a prospective target for therapeutic intervention.
Methods
Cell lines, plasmids and transfections
Daoy cell line was obtained from American Type Culture Collection (ATCC). Cells were cultured in improved minimum essential medium (IMEM) (Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (Atlanta Biologicals, Inc., Lawrenceville, GA, USA). Msi1 was knocked down using a shRNAmir retroviral vector targeting the sequence 5'-CGTCCTGTATCATATGTAAAT-3' located in the 3'UTR of Msi1 mRNA (Oligo ID # V2HS_280120; Open Biosystems). Cells were transfected at 95% confluency using Lipofectamine2000 reagent (Invitrogen) according to manufacturer's instructions. Stable integration of the plasmid encoding the shRNA was selected using 1 μg/mL of puromycin (InvivoGen, San Diego, CA, USA). A stable Daoy cell line expressing a non-silencing shRNAmir (Open Biosystems) was also generated as a negative control.
Musashi1 polyclonal antibody generation
A 174 nucleotide sequence encoding a 65 aminoacid peptide unique for Msi1 (FPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTLERPHRD) was cloned into pGEX-4T-1 (GE Healthcare, Piscataway, NJ, USA) to generate a GST-Msi1 fusion protein. GST-Msi1 recombinant protein was purified to >90% homogeneity using Glutathione Sepharose 4B (GE Healthcare) according to manufacturer's instructions. Antibodies raised against Msi1 were affinity-purified from the rabbit antisera by column chromatography in two steps: first using the antigen (GST-Msi1 protein) and then using the GST purified protein. The antibodies were eluted in PBS containing 0.01% of sodium azide and stored at -80°C.
Western blotting
For western blot analysis cells were disrupted in lysis buffer as described [
45]. Equal amounts of protein extract (50 μg per lane) were solubilized in 2× reducing sample buffer (62.5 mM Tris-Hcl pH 6.8, 25% glycerol, 2% SDS, 0.1% w/v Orange G and 40 mM DTT), run on 12% Tris-glycine SDS-Polyacrylamide gels and transferred to nitrocellulose membranes (Invitrogen) using a semi-dry trans-blot system (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Membranes were stained with 0.1% w/v Ponceau Red (Sigma-Aldrich, St Louis, MO, USA) solution, blocked in 0.1% Tween 20/PBS containing 5% w/v non-fat dry milk and incubated over night at 4°C with the appropriated antibody; anti-βIII Tubulin (Abcam, Inc., Cambridge, MA, USA), anti-Bcl-2 (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti-β-Actin (loading control; Abcam) following manufacturers' guidelines, or rabbit anti-Musashi1 polyclonal antibody (described above) at a 0.5 μg/mL final concentration in blocking buffer. After washing in 0.1% Tween 20/PBS, blots were incubated for 1 hour at room temperature with goat anti-rabbit IgG HRP conjugated secondary antibody (Santa Cruz) and developed using enhanced chemiluminescence detection (Pierce Biotechnology, Rockford, IL, USA). Experiments were performed twice using different cell extracts. Band densitometry was performed using Adobe Photoshop CS3 Extended version 10.0 software (Adobe Systems Incorporated).
The ability of Daoy cells to grow in soft agar was analyzed as described [
21]. Briefly, 60 mm soft agar plates containing 10% FBS (Atlanta Biologicals) MEM (Invitrogen) and 0.4% agar noble (BD Biosciences, San Jose, CA, USA) were inoculated with a suspension of 3 × 10
3 cells of either control or Msi1 knockdown Daoy. Cells were fed once a week by adding 0.5 ml of complete IMEM medium (Invitrogen). After 8 weeks of incubation, colonies were stained over night with 1 mg/mL
p-iodonitrotetrazolium solution (Sigma) and scored using the colony counting application from the Quantity One software (Bio-Rad). Three individual clones were tested with each sample analyzed in quadruplicate. Two independent experiments were performed with similar results.
Neurosphere culture assay
Daoy neurosphere culture was performed as described [
46] Briefly, cells were trypsinized and washed in Neurobasal medium (Invitrogen) and resuspended at 5 × 10
4 cells/mL in the same medium containing 2 mM L-glutamine, N2 supplement, B27 supplement, 20 ng/mL hrEGF, 20 ng/mL hrbFGF and 50 μg/mL BSA (Invitrogen). 1 μg/mL of puromycin (InvivoGen) was included to ensure shRNA plasmid selection. Fresh growth factors were added to the cells twice a week. Neurospheres were disaggregated in single-cell suspensions and reseeded at clonal density as described [
46] to form secondary, tertiary and quaternary spheres. For the neurosphere dilution assay single-cell suspensions of control and Msi1 knockdown Daoy cells were plated in Neurobasal medium in 96-well plates (serial dilutions from 1000 to 1 cell/well). After 10 days incubation the number of spheres larger than 50 μm in diameter were quantified in 8 wells. Two independent experiments were performed with similar results.
Quantitative RT-PCR
RNA was prepared using Trizol reagent (Invitrogen), treated with RNase-free DNaseI (Roche Diagnostics, Indianapolis, IN, USA) as per manufacturer's protocols and tested by PCR to ensure the absence of genomic DNA contamination. Gene specific primers for real-time RT-PCR, listed in Additional file
1, were designed using Primer3 [
47] and purchased from Integrated DNA Technologies (IDT, Coralville, IA, USA). One-step RT-PCR reactions were performed using an ABI 7500 real time PCR system (Applied Biosystems, Foster City, CA, USA) following manufacturer's instructions. Briefly, 50 ng total RNA was reverse transcribed at 48°C for 45 min using 150 nM gene specific primers, 0.5 U/μL of MultiScribe Reverse Transcriptase and 0.4 U/μL of RNase Inhibitor in 1× SYBR Green PCR Power Master Mix (ABI). RT enzyme was heat inactivated at 95°C for 10 min and PCR was carried out as follows: One cycle of 95°C for 5 min and 40 cycles of 15 s at 95°C followed by 1 min at 50–60°C according to primers' Tm. Relative gene expression was determined using the comparative C
T method and the ABI 7500 Prism Software.
15S RNA levels were used as endogenous control for normalization. Specificity of PCR amplification was confirmed by the dissociation curves of the amplicons. Samples were analyzed in quadruplicate using two different RNA preparations.
Hedgehog pathway blockade
Cyclopamine and its analog tomatidine were purchased from Calbiochem (San Diego, CA, USA) and stocked as 5 mM solution in 95% ethanol. Both drugs were used at a concentration range of 5–20 μM in Neurobasal medium prepared as described above. Briefly, neurospheres were dissociated as described [
46] and single-cell suspensions reseeded at clonal density in 12-well plates (10,000 cells/well). The effects of Hedgehog blockade upon sphere formation in Daoy control and knockdown cells were evaluated after 7 days of incubation. Two experiments were performed with similar results.
Statistical analysis
Statistical analysis was performed using GraphPad (GraphPad Software, Inc., San Diego, CA, USA). Data from quantitative RT-PCR, soft agar growth and SP is presented as means ± standard error (se), and were analyzed by two-tailed unpaired Student's t-test. Differences were considered significant when P-value was below 0.05.
Discussion
Msi1 is an RNA binding protein with an essential role in maintaining the stem cell state [
1,
3,
4]. High levels of Msi1 have been found in several malignancies, including medulloblastoma [
5,
6]. As Msi1 expression was elevated in Daoy neurospheres (Figure
1), we asked if Msi1 may promote expansion of cancer cells. In this study, we used the cell line Daoy as our model system. Daoy is a well-characterized cell line, which among other features, expresses elevated levels of Msi1 [
5], is able to form colonies in soft agar and neurospheres when cultured in the presence of growth factors, has functional Notch, Hedgehog and Wnt signaling pathways and is tumorigenic in
nude mice [
26‐
28]. We performed a shRNA mediated knockdown of Msi1 in Daoy and found that cancer cells expressing low levels of Msi1 were less clonogenic (proliferation assay), more differentiated (higher βIII Tubulin expression) and, possibly, more apoptotic (lower Bcl2 expression). We also observed a defect in neurosphere formation which was consistent with a potential role of Msi1 in activating proliferation and/or preventing differentiation and apoptosis in Daoy cells. Taken together, our data suggest that Msi1 may contribute to the proliferation of cancer cells. This observation was in agreement with previous reports correlating high levels of Msi1 with glioma and astrocytoma malignancy [
8,
9].
Notch, Hedgehog, Wnt and p53 are important pathways that are frequently found to be deregulated in cancer (reviewed in [
14‐
17]). Msi1 represses translation of
numb [
12]; an antagonist of Notch and Hedgehog signaling pathways [
18,
19] which also prevents degradation of the tumor suppressor p53 [
20]. Msi1 also activates Wnt pathway through an autocrine mechanism [
23]. Thus it is possible that high levels of Msi1 may deregulate Notch, Hedgehog, Wnt and p53 activities in cancer cells thereby contributing to tumor growth.
We performed gene expression analysis to determine the downstream effects derived from Msi1 depletion. Since Daoy is p53 defective, the effects detected in cell proliferation in our model system are therefore independent of p53. However, given that p53 inactivation is found in 50% of the malignancies (reviewed in [
17]), an in-depth work to elucidate the possible effects of Msi1 upon p53 activity in cancer cells is highly desirable.
We demonstrated that Msi1 regulates the expression of several genes involved in cell proliferation and tumorigenicity such us
MYCN,
SMO,
NOTCH2,
CCND1,
CCND2,
CDKN1A,
FOS,
GLI1, and
DKK1 [
26,
29‐
36]. Noteworthy was the differential expression of two cell cycle regulators:
CDKN1A (encoding p21
WAF) and
CCND1 (encoding Cyclin D1). A 2-fold decrease was found in
CDKN1A levels when Msi1 was depleted in Daoy, possibly due to a reduced Hedgehog activity. Battelli
et al. [
13] reported that over-expression of Msi1 in HEK293 activates cell proliferation by down-regulating p21
WAF protein levels. Using a knockdown model in Daoy, we showed that Msi1 increases p21
WAF transcription, possibly,
via Hedgehog activation. Although found in different model systems, it seems that Msi1 may play a dual role in regulating p21
WAF; positive and indirect at the level of transcription (as shown here) and negative and direct at the post-transcriptional level (as previously reported [
13]).
The up-regulation of
CCND1 detected in the Msi1 knockdown was intriguing.
CCND1 transcription is induced in response to many oncogenic signals like Ras, ErB2, Src and Wnt (reviewed in [
37]) and CyclinD1 overexpression is associated with tumorigenesis and metastasis. Moreover,
CCND1 expression is considered an early event in malignancy and its loss inhibits tumor formation in a
Ptch1
+/- mouse model [
38]. On the other hand and in agreement with our observation, down-regulation of
CCND1 has recently been reported by Rubio et al. during spontaneous mesenchymal cell transformation [
39]. Therefore, the mechanism driving up-regulation of
CCND1 and its biological implications in our knockdown model system would justify a more intense investigation.
Cross-talk within Notch, Hedgehog and Wnt pathways has often been reported [
5,
23,
26,
31,
40‐
42] indicating that the activity of these pathways needs to be fine-tuned in order to maintain homeostasis. We observed that Msi1 regulated the expression of Hedgehog key components, including the pathway mediators
SMO and
GLI1 and the pathway downstream target
MYCN, known to control cell proliferation and tumorigenicity [
29,
30,
34]. Interestingly, simultaneous expression of
MSI1 and
MYCN occurs in clinical specimens
http://home.ccr.cancer.gov/oncology/oncogenomics/, which posits
MYCN as an attractive Msi1 downstream effector. Moreover,
MYCN represses transcription of the tumor suppressor
DKK1 [
43]. We thus propose that down-regulation of
MYCN in Daoy cancer cells after Msi1 depletion might induce expression of the Wnt repressor
DKK1, therefore interconnecting Msi1, Wnt and Hedgehog signaling pathways. At least in part, this Msi1/MycN/Dkk-1 axis may explain the growth suppressive effect observed in our knockdown model system.
To determine the relevance of the Hedgehog pathway in Daoy cancer cells, we performed a neurosphere culture assay in the presence of cyclopamine. Cyclopamine inhibited neurosphere formation in both cases; however, the effects in the knockdown cells were evident at a significantly lower concentration of antagonist. This data was consistent with a partial down-regulation of Hedgehog activity after Msi1 depletion in Daoy cells. On the other hand, it does not exclude the possibility that Msi1 may also modulate the activity of additional cell proliferation pathways such as Notch or Wnt.
We also found that Msi1 increased
NOTCH2 levels thus suggesting a potential role of Msi1 in contributing to tumor growth.
NOTCH2 is a component of the Notch pathway that acts as a mitogen for cerebellar granule cell precursors [
44] and whose expression has been associated with malignancy in brain tumors and with the persistence of cancer cells [
26,
27,
33]. Indeed, it has been shown that Notch blockade reduces cancer cells in Daoy and inhibits tumor engraftment in nude mice [
26,
27].
Competing interests
The authors declare that they have no competing interests.
Authors' contributions
PCSD performed all the experiments, interpreted the results, contributed with scientific discussion and prepared the manuscript. TLB and SCB provided technical assistance. JYH and LOFP contributed with scientific discussion and manuscript preparation. All authors read and approved the final manuscript.