Mutation analysis of the MDM4gene in German breast cancer patients
- Open Access
- 01.12.2008
- Research article
Abstract
Background
Methods
Patients
Mutation analyses
Exon | Primer | Annealing (°C) | Product size (bp) |
|---|---|---|---|
1
| 5'-TCTGATCTCCTAATACACGTCTG-3' 5'-GCCTGCTCCTCACTCTCCAG-3' | 62 | 416 |
2
| 5'-CTGGTTGCCTTTGTGTGAATG-3' 5'-CTGGGATTACAGTCATGAGAC-3' | 62 | 296 |
3
| 5'-AGAGGTTCTCTTGTTCCATAG-3' 5'-GATCTGAGATCGCACCACTG-3' | 62 | 253 |
4
| 5'-CAGATCAGTTCATTTCTGTGCTG-3' 5'-CATATTCTCAGTGCCTCATAGG-3' | 62 | 520 |
5
| 5'-GATTCTGCCTTTGTATGCCTTAC-3' 5'-CTCAAAGCTGTGATACAGACTG-3' | 62 | 234 |
6
| 5'-CAGCCAACATGGAGAAGTAC-3' 5'-CAGAGAAGGTTCACTCTGTC-3' | 62 | 356 |
7
| 5'-GGTGAGCCAGAATGGAACTG-3' 5'-ACAATGGTAGTAACTAGGCTG-3' | 62 | 334 |
8
| 5'-AGCTCTGCCACTAAGACAG-3' 5'-CAAGAGTAACCAAGAATGTTACC-3' | 62 | 389 |
9
| 5'-GATGTAGTGTGACGACATTGAG-3' 5'-CAACAGATGATACTATGAGCAC-3' | 62 | 311 |
10
| 5'-CTACTACTGAAATGCCAACTAGAAG-3' 5'-GGATTACATCATCTGAAGATGG-3' | 62 | 329 |
11 (a)
| 5'-GCTTAGTGAGAGGATGTGAATG-3' 5'-CTGTCGTTAGACCTAAAGATGC-3' | 59 | 431 |
11 (b)
| 5'-CTGTCGTTAGACCTAAAGATGC-3' 5'-CCTAAGAACATTCTCTGACAG-3' | 59 | 475 |
Results
Location | Nucleotide change | Codon | No. of carriers (frequency) | NCBI database | ||
|---|---|---|---|---|---|---|
het | hom | total | ||||
5'-UTR | c.-103T>C | none | 3 (.08) | - | 3 (.08) | rs4252668 |
Exon 4 | c.222A>T | Val74Val | 3 (.08) | - | 3 (.08) | not listed |
Intron 5 | c.343+9C>T | none | 12 (.30) | 1 (.03) | 13 (.33) | rs4252697 |
Exon 7 | c.458A>G | Asp153Gly | 1 (.03) | - | 1 (.03) | not listed |
Intron 8 | c.672+28C>T | none | 19 (.48) | - | 19 (.48) | rs4252717 |
Intron 9 | c.823-62T>C | none | 19 (.48) | - | 19 (.48) | rs2290855 |
Intron 10 | c.903+20G>A | none | 19 (.48) | - | 19 (.48) | rs2290854 |
3'-UTR | c.*+32A>C | none | 17 (.43) | - | 17 (.43) | rs4245739 |