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Erschienen in: International Journal of Legal Medicine 6/2018

24.08.2018 | Population Data

Phylogenetic analysis and forensic evaluation among Rakhine, Marma, Hajong, and Manipuri tribes from four culturally defined regions of Bangladesh using 17 Y-chromosomal STRs

verfasst von: Mahamud Hasan, Abu Sufian, Pilu Momtaz, Ashish Kumar Mazumder, Jabedul Alam Khondaker, Saikat Bhattacharjee, Kanchan Chakma, Sharif Akhteruzzaman

Erschienen in: International Journal of Legal Medicine | Ausgabe 6/2018

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Abstract

We have analyzed haplotypes for 17 Y chromosomal STR loci in Bangladeshi mainstream Bengali population and four largest ethnic groups inhabiting the North-Eastern and Southern region of Bangladesh using AmpFlSTR® Yfiler® PCR amplification systems. A total of 667 haplotypes from Bangladeshi Bangali, 157 from Rakhine, 144 from Marma, 112 from Hajong, and 136 from Manipuri individuals were observed with corresponding discrimination capacity (DC) of 0.973 for Bengali, 0.723 for Rakhine, 0.743 for Marma, 0.794 for Hajong, and 0.720 for Manipuri groups, respectively. In order to investigate genetic relationship and the pattern of paternal contributions of the studied population, a comparison of the studied data with the published data from Y-STR haplotype reference database (YHRD) was conducted based on analysis of molecular variance (AMOVA). Construction of neighbour-joining tree revealed that the Rakhine population lies closer to a clade consisting, Korean and Japanese population. The Hajong population showed close affinity with Riang (Tripura, India) tribe followed by Marma population. On the other hand, Manipuri group is closely related to Thai population followed by Tamil and mainstream Bengali population.
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Literatur
2.
Zurück zum Zitat Carlson RV, Boyd KM, Webb DJ (2004) The revision of the declaration of Helsinki: past, present and future. Br J Clin Pharmacol 57:695–713CrossRef Carlson RV, Boyd KM, Webb DJ (2004) The revision of the declaration of Helsinki: past, present and future. Br J Clin Pharmacol 57:695–713CrossRef
3.
Zurück zum Zitat Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506–518PubMed Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506–518PubMed
4.
Zurück zum Zitat Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK (2006) Development and validation of the AmpFlSTRYfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 51:64–75CrossRef Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK (2006) Development and validation of the AmpFlSTRYfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 51:64–75CrossRef
5.
Zurück zum Zitat Hasan M, Momtaz P, Hosen I, Das SA, Akhteruzzaman S (2015) Population genetics of 17 Y-chromosome STRs loci in Garo and Santal tribal populations in Bangaldesh. Int J Legal Med 129:251–252CrossRef Hasan M, Momtaz P, Hosen I, Das SA, Akhteruzzaman S (2015) Population genetics of 17 Y-chromosome STRs loci in Garo and Santal tribal populations in Bangaldesh. Int J Legal Med 129:251–252CrossRef
6.
Zurück zum Zitat Gusmão L, Butler JM, Carracedo A, Gill AP, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler Smith C, Schneider PM (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendation on the use of Y-STRs in forensic analysis. Forensic Sci Int 157:187–197CrossRef Gusmão L, Butler JM, Carracedo A, Gill AP, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler Smith C, Schneider PM (2006) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendation on the use of Y-STRs in forensic analysis. Forensic Sci Int 157:187–197CrossRef
7.
Zurück zum Zitat Willuweit S, Roewer L (2007) Y chromosome haplotype reference database (YHRD): update. Forensic Sci Int Genet 1(2):83–87CrossRef Willuweit S, Roewer L (2007) Y chromosome haplotype reference database (YHRD): update. Forensic Sci Int Genet 1(2):83–87CrossRef
9.
Zurück zum Zitat Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, pp 176–179CrossRef Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, pp 176–179CrossRef
10.
Zurück zum Zitat Hasan MM, Momtaz P, Hossain T, Mazumder AK, Khondaker JA, Sufian A, Makhdum MN, Akhteruzzaman S (2016) Phylogenetic and forensic studies of the Bangladeshi population using next-generation PowerPlex® Y23 STR marker system. Int J Legal Med 130(6):1493–1495CrossRef Hasan MM, Momtaz P, Hossain T, Mazumder AK, Khondaker JA, Sufian A, Makhdum MN, Akhteruzzaman S (2016) Phylogenetic and forensic studies of the Bangladeshi population using next-generation PowerPlex® Y23 STR marker system. Int J Legal Med 130(6):1493–1495CrossRef
11.
Zurück zum Zitat Budowle B, Aranda XG, Lagace RE, Hennessy LK, Planz JV, Rodriguez M, Eisenberg AJ (2008) Null allele sequence structure at the DYS448 locus and implications for profile interpretation. Int J Legal Med 122:421–427CrossRef Budowle B, Aranda XG, Lagace RE, Hennessy LK, Planz JV, Rodriguez M, Eisenberg AJ (2008) Null allele sequence structure at the DYS448 locus and implications for profile interpretation. Int J Legal Med 122:421–427CrossRef
12.
Zurück zum Zitat Chang YM, Perumal R, Keat PY, Kuehn DL (2007) Haplotype diversity of 16 Y-chromosomal STR in three main ethnic populations (Malays, Chinese and Indians) in Malaysia. Forensic Sci Int 167:70–76CrossRef Chang YM, Perumal R, Keat PY, Kuehn DL (2007) Haplotype diversity of 16 Y-chromosomal STR in three main ethnic populations (Malays, Chinese and Indians) in Malaysia. Forensic Sci Int 167:70–76CrossRef
13.
Zurück zum Zitat Park MJ, Kraayenbrink T, Opgenort JR, van Driem GL, Tuladhar NM, de Knijff P, Jobling MA (2007) Diversity of 26-locus Y-STR haplotypes in a Nepalese population sample: isolation and drift in the Himalayas. Forensic Sci Int 166:176–181CrossRef Park MJ, Kraayenbrink T, Opgenort JR, van Driem GL, Tuladhar NM, de Knijff P, Jobling MA (2007) Diversity of 26-locus Y-STR haplotypes in a Nepalese population sample: isolation and drift in the Himalayas. Forensic Sci Int 166:176–181CrossRef
14.
Zurück zum Zitat Park MJ, Kyoung-Jin S, Kim NY, Yang YI, Cho SH, Lee HY (2008) Characterization of deletion in DYS385 flanking region and null alleles associated with AZFc microdeletions in Koreans. J Forensic Sci 53:331–334CrossRef Park MJ, Kyoung-Jin S, Kim NY, Yang YI, Cho SH, Lee HY (2008) Characterization of deletion in DYS385 flanking region and null alleles associated with AZFc microdeletions in Koreans. J Forensic Sci 53:331–334CrossRef
Metadaten
Titel
Phylogenetic analysis and forensic evaluation among Rakhine, Marma, Hajong, and Manipuri tribes from four culturally defined regions of Bangladesh using 17 Y-chromosomal STRs
verfasst von
Mahamud Hasan
Abu Sufian
Pilu Momtaz
Ashish Kumar Mazumder
Jabedul Alam Khondaker
Saikat Bhattacharjee
Kanchan Chakma
Sharif Akhteruzzaman
Publikationsdatum
24.08.2018
Verlag
Springer Berlin Heidelberg
Erschienen in
International Journal of Legal Medicine / Ausgabe 6/2018
Print ISSN: 0937-9827
Elektronische ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-018-1915-4

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