Phylogenomic analysis of African swine fever virus from the Philippines
- 01.06.2025
- Brief Report
Erschienen in:
- Verfasst von
- Szarina Krisha K. Ko
- Rohani Cena-Navarro
- Ma Jowina H. Galarion
- Gabriela Ilona B. Janairo
- Adrian B. Abarientos
- Rachel R. Azul
- Cristina F. Legaspi
- Jennifer L. Maravilla
- Brian E. Schwem
- Erschienen in
- Archives of Virology | Ausgabe 6/2025
Abstract
African swine fever (ASF) is a viral pandemic in domestic pigs and wild boars that has recently caused outbreaks across Asia, Europe, and the Caribbean. The Philippines has 90% of its provinces affected, but there is limited information on the current circulating strain. Here, we present a comprehensive genomic profile of two ASF virus (ASFV) genomes from blood samples collected at the center of ongoing domestic farm outbreaks in the country in 2020. Using amplification-free whole-genome sequencing and a customized analysis pipeline, we were able to assemble 80-99% of the genome sequence, allowing us to determine the viral genotype (i.e., genotype 2), identify the subgenotype profile based on essential genetic markers, and detect potential variants relative to the current reference strain. This report provides in-depth baseline data on the molecular characteristics of ASFV in the Philippines since the outbreak in 2019.
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- Titel
- Phylogenomic analysis of African swine fever virus from the Philippines
- Verfasst von
-
Szarina Krisha K. Ko
Rohani Cena-Navarro
Ma Jowina H. Galarion
Gabriela Ilona B. Janairo
Adrian B. Abarientos
Rachel R. Azul
Cristina F. Legaspi
Jennifer L. Maravilla
Brian E. Schwem
- Publikationsdatum
- 01.06.2025
- Verlag
- Springer Vienna
- Erschienen in
-
Archives of Virology / Ausgabe 6/2025
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798 - DOI
- https://doi.org/10.1007/s00705-025-06300-x
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