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01.12.2018 | Research | Ausgabe 1/2018 Open Access

Virology Journal 1/2018

Plasma virome of cattle from forest region revealed diverse small circular ssDNA viral genomes

Zeitschrift:
Virology Journal > Ausgabe 1/2018
Autoren:
Hao Wang, Shouxin Li, Asif Mahmood, Shixing Yang, Xiaochun Wang, Quan Shen, Tongling Shan, Xutao Deng, Jingjiao Li, Xiuguo Hua, Li Cui, Eric Delwart, Wen Zhang
Wichtige Hinweise

Electronic supplementary material

The online version of this article (https://​doi.​org/​10.​1186/​s12985-018-0923-9) contains supplementary material, which is available to authorized users.

Abstract

Background

Free-range cattle are common in the Northeast China area, which have close contact with farmers and may carry virus threatening to cattle and farmers.

Methods

Using viral metagenomics we analyzed the virome in plasma samples collected from 80 cattle from the forested region of Northeast China.

Results

The virome of cattle plasma is composed of the viruses belonging to the families including Parvoviridae, Papillomaviridae, Picobirnaviridae, and divergent viral genomes showing sequence similarity to circular Rep-encoding single stranded (CRESS) DNA viruses. Five such CRESS-DNA genomes were full characterized, with Rep sequences related to circovirus and gemycircularvirus. Three bovine parvoviruses belonging to two different genera were also characterized.

Conclusion

The virome in plasma samples of cattle from the forested region of Northeast China was revealed, which further characterized the diversity of viruses in cattle plasma.
Zusatzmaterial
Additional file 1: Primers used in the specific screening PCR and inverse PCR. (PDF 54 kb)
12985_2018_923_MOESM1_ESM.pdf
Additional file 2: The sequence reads of papillomavirus and picobirnavirus in library cattle02. (PDF 33 kb)
12985_2018_923_MOESM2_ESM.pdf
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