01.12.2015 | Research article | Ausgabe 1/2015 Open Access

Polymorphic variation of hypoxia inducible factor-1 A (HIF1A) gene might contribute to the development of knee osteoarthritis: a pilot study
- Zeitschrift:
- BMC Musculoskeletal Disorders > Ausgabe 1/2015
Electronic supplementary material
Competing interests
Authors’ contributions
Background
Patients and methods
Study population
Sample collection
Determination of biochemical parameters
Obtaining genomic DNA
Selection of HIF1A and WISP1 SNPs and Genotyping
Gene
|
Chromosome position
|
dbSNP rs ID
|
Location
|
SNP type
|
---|---|---|---|---|
HIF1A
|
Chr14: 62207557
|
rs11549465
|
Exon 12
|
Pro582Ser, C1772T
|
Chr14: 62207575
|
rs11549467
|
Exon 12
|
Ala588Thr, G1790A
|
|
Chr14: 62213848
|
rs2057482
|
3′ UTR
|
C191T
|
|
WISP1
|
Chr8: 134229883
|
rs2929970
|
3′ UTR
|
A2364G
|
Statistical analysis
Results
Parameters
|
Knee OA patients (
N = 70)
|
Controls (
N = 66)
|
P value
|
---|---|---|---|
Male/Female (%)
|
11.4/88.5
|
10.6/89.4
|
0.87
|
Age (years)
|
55.8 ± 6.7
|
47.5 ± 6.6
|
< 0.00001
|
Weight (kg)
|
72.3 ± 14.5
|
68.8 ± 13.4
|
0.14
|
BMI (kg/m
2)
|
29.8 ± 5.1
|
26.9 ± 4.6
|
0.0007
|
Glucose (mg/dL)
|
112.4 ± 43.4
|
102.4 ± 77.9
|
0.36
|
Total cholesterol (mg/dL)
|
203.0 ± 31.3
|
206.1 ± 60.3
|
0.74
|
Uric acid (mg/dL)
|
5.48 ± 1.18
|
6.28 ± 2.2
|
0.03
|
SNP
|
Genotype
|
HWE (
P)
|
||||||
---|---|---|---|---|---|---|---|---|
Patients
|
Controls
|
Patients
|
Controls
|
|||||
rs11549465
|
CC
|
CT
|
TT
|
CC
|
CT
|
TT
|
||
66
|
4
|
0
|
49
|
17
|
0
|
0.8056
|
0.2297
|
|
rs11549467
|
GG
|
GA
|
AA
|
GG
|
GA
|
AA
|
||
68
|
2
|
0
|
65
|
1
|
0
|
0.9034
|
0.9505
|
|
rs2057482
|
TT
|
TC
|
CC
|
TT
|
TC
|
CC
|
||
59
|
11
|
0
|
55
|
11
|
0
|
0.4755
|
0.4601
|
|
rs2929970
|
GG
|
AG
|
AA
|
GG
|
AG
|
AA
|
||
25
|
37
|
8
|
24
|
33
|
9
|
0.3018
|
0.6581
|
SNP
|
OA
|
Controls
|
P value*
|
OR
|
(95 % CI)
|
---|---|---|---|---|---|
N (%)
|
N (%)
|
||||
HIF1A (rs11549465)
|
|||||
CC
|
66 (94.2)
|
49 (74.2)
|
0.003
|
5.7
|
1.7–21.6
|
CT
|
4 (5.8)
|
17 (25.8)
|
0.003
|
0.2
|
0.05–0.60
|
TT
|
0 (0.0)
|
0 (0.0)
|
-
|
||
C
|
136 (97.0)
|
115 (87.1)
|
0.004
|
5.0
|
1.53–18.2
|
T
|
4 (3.0)
|
17 (12.9)
|
0.004
|
0.2
|
0.05–0.65
|
HIF1A (rs11549467)
|
|||||
GG
|
68 (97.1)
|
65 (98.5)
|
1.77
|
0.5
|
0.02–76.1
|
GA
|
2 (2.8)
|
1 (1.5)
|
1.77
|
1.9
|
0.13–54.6
|
AA
|
0 (0.0)
|
0 (0.0)
|
-
|
||
A
|
138 (98.5)
|
131 (99.2)
|
1.18
|
0.5
|
0.02–7.5
|
G
|
2 (1.5)
|
1 (0.8)
|
1.18
|
1.9
|
0.13–53.5
|
HIF1A (rs2057482)
|
|||||
TT
|
59 (84.3)
|
55 (83.3)
|
2.64
|
1.0
|
0.39–2.93
|
TC
|
11 (15.7)
|
11 (16.4)
|
2.64
|
0.9
|
0.34–2.54
|
CC
|
0 (0.0)
|
0 (0.0)
|
-
|
||
T
|
129 (92.1)
|
121 (91.6)
|
1.76
|
1.0
|
0.41–2.76
|
C
|
11 (7.9)
|
11 (8.4)
|
1.76
|
0.9
|
0.36–2.43
|
WISP1 (rs2929970)
|
|||||
GG
|
25 (35.7)
|
24 (36.4)
|
2.52
|
0.9
|
0.42–2.06
|
AG
|
37 (52.8)
|
33 (50.0)
|
2.52
|
1.0
|
0.49–2.39
|
AA
|
8 (11.5)
|
9 (13.6)
|
1.98
|
0.7
|
0.24–2.58
|
A
|
53 (37.8)
|
51 (38.6)
|
1.78
|
0.9
|
0.58–1.63
|
G
|
87 (62.2)
|
81 (61.4)
|
1.78
|
1.0
|
0.62–1.74
|