Background
Methods
Subjects
DNA extraction and sequencing
Transcription prediction
Statistical analysis
Results
Characteristics of subjects
Polymorphism loci in CCR5 promoter region
Association of polymorphism in CCR5 promoter region with cervical cancer
CO (N = 682) | CIN (n = 336) | CC (n = 488) | CIN vs CO | CC vs CO | CIN vs CC | |||||
---|---|---|---|---|---|---|---|---|---|---|
P*
| OR(95%CI) |
P
| OR(95%CI) |
P
| OR(95%CI) | |||||
rs2227010 | G | 244 (17.89%) | 142 (21.13%) | 185 (18.95%) | 0.079 | 1.230 (0.976–1.550) | 0.511 | 1.074 (0.869–1.327) | 0.276 | 0.873 (0.683–1.115) |
A | 1120 (82.11%) | 530 (78.87%) | 791 (81.05%) | |||||||
rs2734648 | G | 622 (45.60%) | 349 (51.93%) | 480 (49.18%) |
0.007
| 1.289 (1.071–1.551) | 0.087 | 1.154 (0.979–1.361) | 0.272 | 1.117 (0.917–1.359) |
T | 742 (54.40%) | 323 (48.07%) | 496 (50.82%) | |||||||
rs1799987 | A | 557 (40.84%) | 312 (46.43%) | 428 (43.85%) | 0.016 | 1.256 (1.042–1.513) | 0.145 | 1.132 (0.958–1.336) | 0.302 | 0.901 (0.740–1.098) |
G | 807 (59.16%) | 360 (53.57%) | 548 (56.15%) | |||||||
rs1799988 | C | 579 (42.44%) | 315 (46.88%) | 415 (42.52%) | 0.058 | 1.196 (0.994–1.440) | 0.972 | 1.003 (0.849–1.184) | 0.08 | 0.838 (0.688–1.022) |
T | 785 (57.55%) | 357 (53.12%) | 561 (57.48%) | |||||||
rs1800023 | A | 622 (45.60%) | 345 (51.34%) | 472 (48.36%) | 0.015 | 1.259 (1.046–1.514) | 0.187 | 1.117 (0.948–1.317) | 0.235 | 0.888 (0.729–1.080) |
G | 742 (54.40%) | 327 (48.66%) | 504 (51.64%) | |||||||
rs1800024 | T | 320 (23.46%) | 173 (25.74%) | 235 (24.08%) | 0.258 | 1.131 (0.914–1.400) | 0.729 | 1.035 (0.853–1.255) | 0.441 | 0.915 (0.729–1.148) |
C | 1044 (76.54%) | 499 (74.26%) | 741 (75.92%) |
Control (N = 682) | CIN (n = 336) | CC (n = 488) | CIN vs CO | CC vs CO | CIN vs CC | ||
---|---|---|---|---|---|---|---|
rs2227010 | GG | 28 (4.11%) | 11 (3.27%) | 24 (4.92%) | χ2 = 7.174, P* = 0.028 | χ2 = 0.522, P = 0.770 | χ2 = 6.099, P = 0.047 |
GA | 188 (27.56%) | 120 (35.72%) | 137 (28.07%) | ||||
AA | 466 (68.33%) | 205 (61.01%) | 327 (67.01%) | ||||
rs2734648 | GG | 143 (20.97%) | 109 (32.44%) | 131 (26.84%) | χ2 = 17.260, P = 1.78E-04 | χ2 = 5.623, P = 0.060 | χ2 = 3.658, P = 0.161 |
TG | 336 (49.26%) | 131 (38.99%) | 218 (44.67%) | ||||
TT | 203 (29.77%) | 96 (28.57%) | 139 (28.48%) | ||||
rs1799987 | AA | 121 (17.74%) | 93 (27.68%) | 110 (22.54%) | χ2 = 14.59, P = 6.78E-04 | χ2 = 4.249, P = 0.1195 | χ2 = 3.420, P = 0.181 |
GA | 315 (46.19%) | 126 (37.50%) | 208 (42.62%) | ||||
GG | 246 (36.07%) | 117 (34.82%) | 170 (34.84%) | ||||
rs1799988 | CC | 129 (18.91%) | 91 (27.08%) | 96 (19.67%) | χ2 = 9.808, P = 0.007 | χ2 = 0.231, P = 0.891 | χ2 = 6.636, P = 0.036 |
TC | 321 (47.07%) | 133 (39.59%) | 223 (45.70%) | ||||
TT | 232 (34.02%) | 112 (33.33%) | 169 (34.63%) | ||||
rs1800023 | AA | 147 (21.55%) | 105 (31.26%) | 127 (26.02%) | χ2 = 11.89, P = 0.003 | χ2 = 3.246, P = 0.1973 | χ2 = 2.904, P = 0.234 |
GA | 328 (48.10%) | 135 (40.17%) | 218 (44.67%) | ||||
GG | 207 (30.35%) | 96 (28.57%) | 143 (29.30%) | ||||
rs1800024 | TT | 43 (6.30%) | 24 (7.14%) | 26 (5.33%) | χ2 = 1.312, P = 0.519 | χ2 = 1.510, P = 0.470 | χ2 = 1.166, P = 0.558 |
CT | 234 (34.32%) | 125 (37.21%) | 183 (37.50%) | ||||
CC | 405 (59.38%) | 187 (55.65%) | 279 (57.17%) |
Inheritance model analysis among the CIN, CC and control groups
Inheritance Model | CO (n = 682) | CIN (n = 336) | CC (n = 488) | CIN vs CO | CC vs CO | CIN vs CC | ||||
---|---|---|---|---|---|---|---|---|---|---|
OR (95% CI) | P* | OR (95% CI) |
P
| OR (95% CI) |
P
| |||||
rs2227010 | ||||||||||
Dominant | A/A | 466 (68.33%) | 205 (61.01%) | 327 (67.01%) | 1.379 (1.050–1.810) | 0.021 | 1.062 (0.829–1.362) | 0.634 | 0.770 (0.577–1.029) | 0.077 |
A/G-G/G | 216 (31.67%) | 131 (38.99%) | 161 (32.99%) | |||||||
Recessive | A/A-A/G | 654 (95.89%) | 325 (96.73%) | 464 (95.18%) | 0.791 (0.389–1.608) | 0.516 | 1.208 (0.691–2.111) | 0.506 | 1.528 (0.738–3.164) | 0.25 |
G/G | 28 (4.11%) | 11 (3.27%) | 24 (4.92%) | |||||||
rs2734648 | ||||||||||
Dominant | T/T | 203 (29.77%) | 96 (28.57%) | 139 (28.48%) | 1.059 (0.794–1.413) | 0.694 | 1.064 (0.824–1.375) | 0.635 | 1.004 (0.738–1.366) | 0.978 |
G/T-G/G | 479 (70.23%) | 240 (71.43%) | 349 (71.52%) | |||||||
Recessive | T/T-G/T | 539 (79.03%) | 227 (67.56%) | 357 (73.16%) | 1.810 (1.350–2.427) |
6.66E-05
| 1.383 (1.054–1.816) | 0.019 | 0.764 (0.564–1.035) | 0.082 |
G/G | 143 (20.97%) | 109 (32.44%) | 131 (26.84%) | |||||||
rs1799987 | ||||||||||
Dominant | G/G | 246 (36.07%) | 117 (34.82%) | 170 (34.84%) | 1.056 (0.803–1.388) | 0.696 | 1.055 (0.828–1.346) | 0.664 | 0.999 (0.747–1.338) | 0.997 |
A/G-A/A | 436 (63.93%) | 219 (65.18%) | 318 (65.16%) | |||||||
Recessive | G/G-A/G | 561 (82.26%) | 243 (72.32%) | 378 (77.46%) | 1.774 (1.302–2.418) |
2.5E-04
| 1.349 (1.010–1.802) | 0.042 | 0.760 (0.552–1.047) | 0.093 |
A/A | 121 (17.74%) | 93 (27.68%) | 110 (22.54%) | |||||||
rs1799988 | ||||||||||
Dominant | T/T | 232 (34.02%) | 112 (33.33%) | 169 (34.63%) | 1.031 (0.782–1.360) | 0.828 | 1 | 0.827 | 0.944 (0.704–1.266) | 0.699 |
C/T-C/C | 450 (65.98%) | 224 (66.67%) | 319 (65.37%) | 0.973 (0.762–1.243) | ||||||
Recessive | T/T-C/T | 553 (81.09%) | 245 (72.92%) | 392 (80.33%) | 1.592 (1.171–2.166) |
0.003
| 1 | 0.746 | 0.659 (0.475–0.915) | 0.013 |
C/C | 129 (18.91%) | 91 (27.08%) | 96 (19.67%) | 1.050 (0.782–1.409) | ||||||
rs1800023 | ||||||||||
Dominant | G/G | 207 (30.35%) | 96 (28.57%) | 143 (29.30%) | 1.089 (0.817–1.452) | 0.559 | 1 | 0.699 | 0.965 (0.710–1.311) | 0.82 |
A/G-A/A | 475 (69.65%) | 240 (71.43%) | 345 (70.70%) | 1.051 (0.815–1.356) | ||||||
Recessive | G/G-A/G | 535 (78.45%) | 231 (68.75%) | 361 (73.98%) | 1.654 (1.233–2.220) |
7.5E-04
| 1 | 0.075 | 0.774 (0.569–1.052) | 0.101 |
A/A | 147 (21.55%) | 105 (31.25%) | 127 (26.02%) | 1.280 (0.975–1.681) | ||||||
rs1800024 | ||||||||||
Dominant | C/C | 405 (59.38%) | 187 (55.65%) | 279 (57.17%) | 1.165 (0.895–1.517) | 0.257 | 1 | 0.449 | 0.940 (0.710–1.244) | 0.666 |
C/T-T/T | 277 (40.62%) | 149 (44.35%) | 209 (42.83%) | 1.095 (0.865–1.386) | ||||||
Recessive | C/C-C/T | 639 (93.70%) | 312 (92.86%) | 462 (94.67%) | 1.143 (0.681–1.918) | 0.612 | 1 | 0.484 | 0.732 (0.412–1.298) | 0.284 |
T/T | 43 (6.30%) | 24 (7.14%) | 26 (5.33%) | 0.836 (0.507–1.381) |
Haplotype analysis among CIN, CC and control group
Haplotypesa | CO (freq.) | CIN (freq.) | CC (freq.) | CIN vs CO | CC vs CO | CIN vs CC | |||
---|---|---|---|---|---|---|---|---|---|
P* | OR (95%CI) |
P
| OR (95%CI) |
P
| OR (95%CI) | ||||
H1: A T G T G C | 690 (50.58%) | 305 (45.39%) | 464 (47.54%) | 1.42E-03 |
0.731 (0.603~0.886)
| 0.060 | 0.847 (0.713~1.007) | 0.157 | 1.159 (0.945~1.421) |
H2: A G A C A T | 282 (20.67%) | 161 (23.95%) | 217 (22.23%) | 0.21 | 1.153 (0.923~1.441) | 0.486 | 1.075 (0.877~1.316) | 0.558 | 0.932 (0.737~1.179) |
H3: G G A C A C | 214 (15.69%) | 134 (19.94%) | 162 (16.60%) | 0.042 | 1.284 (1.009~1.634) | 0.635 | 1.056 (0.843~1.323) | 0.133 | 0.822 (0.637~1.062) |
H4: A G G T A C | 44 (3.23%) | 31 (4.61%) | 50 (5.12%) | 0.178 | 1.380 (0.862~2.210) | 0.026 | 1.598 (1.056~2.418) | 0.533 | 1.158 (0.730~1.836) |