Skip to main content
Erschienen in: Archives of Virology 8/2018

05.04.2018 | Annotated Sequence Record

Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

verfasst von: Miho Kaneko, Loan Phuong Do, Yen Hai Doan, Toyoko Nakagomi, Punita Gauchan, Chantal Ama Agbemabiese, Anh Duc Dang, Osamu Nakagomi

Erschienen in: Archives of Virology | Ausgabe 8/2018

Einloggen, um Zugang zu erhalten

Abstract

Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Tate JE, Burton AH, Boschi-Pinto C, Parashar UD, World Health Organization-Coordinated Global Rotavirus Surveillance Network (2016) Global, regional, and national estimates of rotavirus mortality in children <5 years of age, 2000–2013. Clin Infect Dis 62:S96–S105CrossRefPubMed Tate JE, Burton AH, Boschi-Pinto C, Parashar UD, World Health Organization-Coordinated Global Rotavirus Surveillance Network (2016) Global, regional, and national estimates of rotavirus mortality in children <5 years of age, 2000–2013. Clin Infect Dis 62:S96–S105CrossRefPubMed
2.
Zurück zum Zitat Papp H, László B, Jakab F, Ganesh B, De Grazia S, Matthijnssens J, Ciarlet M, Martella V, Bányai K (2013) Review of group A rotavirus strains reported in swine and cattle. Vet Microbiol 165:190–199CrossRefPubMed Papp H, László B, Jakab F, Ganesh B, De Grazia S, Matthijnssens J, Ciarlet M, Martella V, Bányai K (2013) Review of group A rotavirus strains reported in swine and cattle. Vet Microbiol 165:190–199CrossRefPubMed
3.
Zurück zum Zitat Do LP, Kaneko M, Nakagomi T, Gauchan P, Agbemabiese CA, Dang AD, Nakagomi O (2017) Molecular epidemiology of Rotavirus A, causing acute gastroenteritis hospitalizations among children in Nha Trang, Vietnam, 2007–2008: identification of rare G9P[19] and G10P[14] strains. J Med Virol 89:621–631CrossRefPubMed Do LP, Kaneko M, Nakagomi T, Gauchan P, Agbemabiese CA, Dang AD, Nakagomi O (2017) Molecular epidemiology of Rotavirus A, causing acute gastroenteritis hospitalizations among children in Nha Trang, Vietnam, 2007–2008: identification of rare G9P[19] and G10P[14] strains. J Med Virol 89:621–631CrossRefPubMed
4.
Zurück zum Zitat Kutsuzawa T, Konno T, Suzuki H, Kapikian AZ, Ebina T, Ishida N (1982) Isolation of human rotavirus subgroups 1 and 2 in cell culture. J Clin Microbiol 16:727–730PubMedPubMedCentral Kutsuzawa T, Konno T, Suzuki H, Kapikian AZ, Ebina T, Ishida N (1982) Isolation of human rotavirus subgroups 1 and 2 in cell culture. J Clin Microbiol 16:727–730PubMedPubMedCentral
5.
Zurück zum Zitat Nakagomi T, Nguyen MQ, Gauchan P, Agbemabiese CA, Kaneko M, Do LP, Vu TD, Nakagomi O (2017) Evolution of DS-1-like G1P[8] double-gene reassortant rotavirus A strains causing gastroenteritis in children in Vietnam in 2012/2013. Arch Virol 162:739–748CrossRefPubMed Nakagomi T, Nguyen MQ, Gauchan P, Agbemabiese CA, Kaneko M, Do LP, Vu TD, Nakagomi O (2017) Evolution of DS-1-like G1P[8] double-gene reassortant rotavirus A strains causing gastroenteritis in children in Vietnam in 2012/2013. Arch Virol 162:739–748CrossRefPubMed
6.
Zurück zum Zitat Gauchan P, Nakagomi T, Sherchand JB, Yokoo M, Pandey BD, Cunliffe NA, Nakagomi O (2013) Continued circulation of G12P[6] rotaviruses over 28 months in Nepal: successive replacement of predominant strains. Trop Med Health 41:7–12CrossRefPubMedPubMedCentral Gauchan P, Nakagomi T, Sherchand JB, Yokoo M, Pandey BD, Cunliffe NA, Nakagomi O (2013) Continued circulation of G12P[6] rotaviruses over 28 months in Nepal: successive replacement of predominant strains. Trop Med Health 41:7–12CrossRefPubMedPubMedCentral
7.
Zurück zum Zitat Maes P, Matthijnssens J, Rahman M, Van Ranst M (2009) RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238CrossRefPubMedPubMedCentral Maes P, Matthijnssens J, Rahman M, Van Ranst M (2009) RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238CrossRefPubMedPubMedCentral
8.
Zurück zum Zitat Theuns S, Heylen E, Zeller M, Roukaerts ID, Desmarets LM, Van Ranst M, Nauwynck HJ, Matthijnssens J (2015) Complete genome characterization of recent and ancient Belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses. J Virol 89:1043–1057CrossRefPubMed Theuns S, Heylen E, Zeller M, Roukaerts ID, Desmarets LM, Van Ranst M, Nauwynck HJ, Matthijnssens J (2015) Complete genome characterization of recent and ancient Belgian pig group A rotaviruses and assessment of their evolutionary relationship with human rotaviruses. J Virol 89:1043–1057CrossRefPubMed
Metadaten
Titel
Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam
verfasst von
Miho Kaneko
Loan Phuong Do
Yen Hai Doan
Toyoko Nakagomi
Punita Gauchan
Chantal Ama Agbemabiese
Anh Duc Dang
Osamu Nakagomi
Publikationsdatum
05.04.2018
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 8/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-018-3836-4

Weitere Artikel der Ausgabe 8/2018

Archives of Virology 8/2018 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.