Skip to main content

05.02.2021 | Original Article

Preemptive screening of DPYD as part of clinical practice: high prevalence of a novel exon 4 deletion in the Finnish population

verfasst von: Jatta Saarenheimo, Nesna Wahid, Natalja Eigeliene, Ravichandra Ravi, Gajja S. Salomons, Matilde Fernandez Ojeda, Raymon Vijzelaar, Antti Jekunen, André B. P. van Kuilenburg

Erschienen in: Cancer Chemotherapy and Pharmacology | Ausgabe 5/2021

Einloggen, um Zugang zu erhalten

Abstract

Capecitabine is a fluoropyrimidine that is widely used as a cancer drug for the treatment of patients with a variety of cancers. Unfortunately, early onset, severe or life-threatening toxicity is observed in 19–32% of patients treated with capecitabine and 5FU. Dihydropyrimidine dehydrogenase (DPD) is the rate-limiting enzyme in the degradation of 5FU and a DPD deficiency has been shown to be a major determinant of severe fluoropyrimidine-associated toxicity. DPD is encoded by the DPYD gene and some of the identified variants have been described to cause DPD deficiency. Preemptive screening for DPYD gene alterations enables the identification of DPD-deficient patients before administering fluoropyrimidines. In this article, we describe the application of upfront DPD screening in Finnish patients, as a part of daily clinical practice, which was based on a comprehensive DPYD gene analysis, measurements of enzyme activity and plasma uracil concentrations. Almost 8% of the patients (13 of 167 patients) presented with pathogenic DPYD variants causing DPD deficiency. The DPD deficiency in these patients was further confirmed via analysis of the DPD activity and plasma uracil levels. Interestingly, we identified a novel intragenic deletion in DPYD which includes exon 4 in four patients (31% of patients carrying a pathogenic variant). The high prevalence of the exon 4 deletion among Finnish patients highlights the importance of full-scale DPYD gene analysis. Based on the literature and our own experience, genotype preemptive screening should always be used to detect DPD-deficient patients before fluoropyrimidine therapy.
Literatur
1.
Zurück zum Zitat Meyerhardt JA, Mayer RJ (2005) Systemic therapy for colorectal cancer. N Engl J Med 352:476–487CrossRef Meyerhardt JA, Mayer RJ (2005) Systemic therapy for colorectal cancer. N Engl J Med 352:476–487CrossRef
2.
Zurück zum Zitat Twelves C, Wong A, Nowacki MP, Abt M, Burris H III, Carrato A et al (2005) Capecitabine as adjuvant treatment for stage III colon cancer. N Engl J Med 352:2696–2704CrossRef Twelves C, Wong A, Nowacki MP, Abt M, Burris H III, Carrato A et al (2005) Capecitabine as adjuvant treatment for stage III colon cancer. N Engl J Med 352:2696–2704CrossRef
3.
Zurück zum Zitat Barin-Le Guellec C, Lafay-Chebassier C, Ingrand I, Tournamille JF, Boudet A, Lanoue MC et al (2020) Toxicities associated with chemotherapy regimens containing a fluoropyrimidine: A real–life evaluation in France. Eur J Cancer 124:37–46CrossRef Barin-Le Guellec C, Lafay-Chebassier C, Ingrand I, Tournamille JF, Boudet A, Lanoue MC et al (2020) Toxicities associated with chemotherapy regimens containing a fluoropyrimidine: A real–life evaluation in France. Eur J Cancer 124:37–46CrossRef
4.
Zurück zum Zitat Lévy E, Piedbois P, Buyse M, Pignon JP, Rougier P, Ryan L et al (1998) Toxicity of fluorouracil in patients with advanced colorectal cancer: effect of administration schedule and prognostic factors. J Clin Oncol 16:3537–3541CrossRef Lévy E, Piedbois P, Buyse M, Pignon JP, Rougier P, Ryan L et al (1998) Toxicity of fluorouracil in patients with advanced colorectal cancer: effect of administration schedule and prognostic factors. J Clin Oncol 16:3537–3541CrossRef
5.
Zurück zum Zitat Grem JL (2000) 5-Fluorouracil: forty-plus and still ticking. A review of its preclinical and clinical development. Invest New Drugs 18:299–313CrossRef Grem JL (2000) 5-Fluorouracil: forty-plus and still ticking. A review of its preclinical and clinical development. Invest New Drugs 18:299–313CrossRef
7.
Zurück zum Zitat Van Kuilenburg ABP (2004) Dihydropyrimidine dehydrogenase and the efficacy and toxicity of 5–fluorouracil. Eur J Cancer 40:939–950CrossRef Van Kuilenburg ABP (2004) Dihydropyrimidine dehydrogenase and the efficacy and toxicity of 5–fluorouracil. Eur J Cancer 40:939–950CrossRef
8.
Zurück zum Zitat Amstutz U, Froehlich TK, Largiader CR (2011) Dihydropyrimidine dehydrogenase gene as a major predictor of severe 5-fluorouracil toxicity. Pharmacogenomics 12:1321–1336CrossRef Amstutz U, Froehlich TK, Largiader CR (2011) Dihydropyrimidine dehydrogenase gene as a major predictor of severe 5-fluorouracil toxicity. Pharmacogenomics 12:1321–1336CrossRef
9.
Zurück zum Zitat Toffoli G, Giodini L, Buonadonna A, Berretta M, De Paoli A, Scalone S et al (2015) Clinical validity of a DPY-based pharmacogenetics test to predict severe toxicity to fluoropyrimidines. Int J Cancer 137:2971–2980CrossRef Toffoli G, Giodini L, Buonadonna A, Berretta M, De Paoli A, Scalone S et al (2015) Clinical validity of a DPY-based pharmacogenetics test to predict severe toxicity to fluoropyrimidines. Int J Cancer 137:2971–2980CrossRef
10.
Zurück zum Zitat Lu Z, Zhang R, Diasio RB (1993) Dihydropyrimidine dehydrogenase activity in human peripheral blood mononuclear cells and liver: population characteristics, newly identified deficient patients, and clinical implication in 5-fluorouracil chemotherapy. Cancer Res 53:5433–5438PubMed Lu Z, Zhang R, Diasio RB (1993) Dihydropyrimidine dehydrogenase activity in human peripheral blood mononuclear cells and liver: population characteristics, newly identified deficient patients, and clinical implication in 5-fluorouracil chemotherapy. Cancer Res 53:5433–5438PubMed
11.
Zurück zum Zitat Johnson MR, Diasio RB (2001) Importance of dihydropyrimidine dehydrogenase (DPD) deficiency in patients exhibiting toxicity following treatment with 5-fluorouracil. Adv Enzyme Regul 41:151–157CrossRef Johnson MR, Diasio RB (2001) Importance of dihydropyrimidine dehydrogenase (DPD) deficiency in patients exhibiting toxicity following treatment with 5-fluorouracil. Adv Enzyme Regul 41:151–157CrossRef
12.
Zurück zum Zitat Elraiyah T, Jerde CR, Shrestha S, Wu R, Nie Q, Giama NH et al (2017) Novel deleterious dihydropyrimidine dehydrogenase variants may contribute to 5-fluorouracil sensitivity in an East African population. Clin Pharmacol Ther 101:382–390CrossRef Elraiyah T, Jerde CR, Shrestha S, Wu R, Nie Q, Giama NH et al (2017) Novel deleterious dihydropyrimidine dehydrogenase variants may contribute to 5-fluorouracil sensitivity in an East African population. Clin Pharmacol Ther 101:382–390CrossRef
14.
Zurück zum Zitat Morel A, Boisdron-Celle M, Fey L, Soulie P, Craipeau MC, Traore S, Gamelin E (2006) Clinical relevance of different dihydropyrimidine dehydrogenase gene single nucleotide polymorphisms on 5-fluorouracil tolerance. Mol Cancer Ther 5:2895–2904CrossRef Morel A, Boisdron-Celle M, Fey L, Soulie P, Craipeau MC, Traore S, Gamelin E (2006) Clinical relevance of different dihydropyrimidine dehydrogenase gene single nucleotide polymorphisms on 5-fluorouracil tolerance. Mol Cancer Ther 5:2895–2904CrossRef
15.
Zurück zum Zitat Meulendijks D, Henricks LM, Sonke GS, Deenen MJ, Froehlich TK, Amstutz U et al (2015) Clinical relevance of DPYD variants c.1679T>G, c.1236G>A/HapB3, and c.1601G>A as predictors of severe fluoropyrimidine-associated toxicity: a systematic review and meta-analysis of individual patient data. Lancet Oncol 16(16):1639–1650. https://doi.org/10.1016/S1470-2045(15)00286-7CrossRefPubMed Meulendijks D, Henricks LM, Sonke GS, Deenen MJ, Froehlich TK, Amstutz U et al (2015) Clinical relevance of DPYD variants c.1679T>G, c.1236G>A/HapB3, and c.1601G>A as predictors of severe fluoropyrimidine-associated toxicity: a systematic review and meta-analysis of individual patient data. Lancet Oncol 16(16):1639–1650. https://​doi.​org/​10.​1016/​S1470-2045(15)00286-7CrossRefPubMed
18.
Zurück zum Zitat Lunenburg CATC, van der Wouden CH, Nijenhuis M, Crommentuijn-van Rhenen MH, de Boer-Veger NJ, Buunk AM et al (2020) Dutch Pharmacogenetics Working Group (DPWG) guideline for the gene-drug interaction of DPYD and fluoropyrimidines. Eur J Hum Genet 28:508–517CrossRef Lunenburg CATC, van der Wouden CH, Nijenhuis M, Crommentuijn-van Rhenen MH, de Boer-Veger NJ, Buunk AM et al (2020) Dutch Pharmacogenetics Working Group (DPWG) guideline for the gene-drug interaction of DPYD and fluoropyrimidines. Eur J Hum Genet 28:508–517CrossRef
19.
Zurück zum Zitat Henricks LM, Lunenburg CATC, de Man FM, Meulendijks D, Frederix GWJ, Kienhuis E et al (2019) A cost analysis of upfront DPYD genotype-guided dose individualisation in fluoropyrimidine-based anticancer therapy. Eur J Cancer 107:60–67CrossRef Henricks LM, Lunenburg CATC, de Man FM, Meulendijks D, Frederix GWJ, Kienhuis E et al (2019) A cost analysis of upfront DPYD genotype-guided dose individualisation in fluoropyrimidine-based anticancer therapy. Eur J Cancer 107:60–67CrossRef
20.
Zurück zum Zitat Van Staveren MC, Guchelaar HJ, van Kuilenburg AB, Gelderblom H, Maring JG (2013) Evaluation of predictive tests for screening for dihydropyrimidine dehydrogenase deficiency. Pharmacogenomics J 13:389–395CrossRef Van Staveren MC, Guchelaar HJ, van Kuilenburg AB, Gelderblom H, Maring JG (2013) Evaluation of predictive tests for screening for dihydropyrimidine dehydrogenase deficiency. Pharmacogenomics J 13:389–395CrossRef
21.
Zurück zum Zitat Amstutz U, Henricks LM, Offer SM, Barbino J, Schellens JHM, Swen JJ et al (2018) Clinical pharmacogenetics implementation consortium (CPIC) guideline for dihydropyrimidine dehydrogenase genotype and fluoropyrimidine dosing: 2017 update. Clin Pharm Ther 103:210–216CrossRef Amstutz U, Henricks LM, Offer SM, Barbino J, Schellens JHM, Swen JJ et al (2018) Clinical pharmacogenetics implementation consortium (CPIC) guideline for dihydropyrimidine dehydrogenase genotype and fluoropyrimidine dosing: 2017 update. Clin Pharm Ther 103:210–216CrossRef
22.
Zurück zum Zitat Henricks LM, Lunenburg CATC, de Man FM, Meulendijks D, Frederix GWJ, Kienhuis E et al (2018) DPYD genotype-guided dose individualization of fluoropyrimidine therapy in patients with cancer: a prospective safety analysis. Lancet Oncol 19:1459–1467CrossRef Henricks LM, Lunenburg CATC, de Man FM, Meulendijks D, Frederix GWJ, Kienhuis E et al (2018) DPYD genotype-guided dose individualization of fluoropyrimidine therapy in patients with cancer: a prospective safety analysis. Lancet Oncol 19:1459–1467CrossRef
23.
Zurück zum Zitat Van Kuilenburg ABP, Meijer J, Maurer D, Dobritzsch D, Meinsma R, Los M et al (2017) Severe fluoropyrimidine toxicity due to novel and rare DPYD missense mutations, deletion and genomic amplification affecting DPD activity and mRNA splicing. Biochim Biophys Acta Mol Basis Dis 1863:721–730CrossRef Van Kuilenburg ABP, Meijer J, Maurer D, Dobritzsch D, Meinsma R, Los M et al (2017) Severe fluoropyrimidine toxicity due to novel and rare DPYD missense mutations, deletion and genomic amplification affecting DPD activity and mRNA splicing. Biochim Biophys Acta Mol Basis Dis 1863:721–730CrossRef
24.
Zurück zum Zitat Van Kuilenburg ABP, Meijer J, Mul ANMP, Meinsma R, Schmid V, Dobritzsch D et al (2010) Intragenic deletions and a deep intronic mutation affecting pre-mRNA splicing in the dihydropyrimidine dehydrogenase gene as novel mechanisms causing 5-fluorouracil toxicity. Hum Genet 128:529–538CrossRef Van Kuilenburg ABP, Meijer J, Mul ANMP, Meinsma R, Schmid V, Dobritzsch D et al (2010) Intragenic deletions and a deep intronic mutation affecting pre-mRNA splicing in the dihydropyrimidine dehydrogenase gene as novel mechanisms causing 5-fluorouracil toxicity. Hum Genet 128:529–538CrossRef
25.
Zurück zum Zitat Van Kuilenburg ABP, Meijer J, Tanck MWT, Dobritzsch D, Zoetekouw L, Dekkers LL et al (2016) Phenotypic and clinical implications of variants in the dihydropyrimidine dehydrogenase gene. Biochim Biophys Acta 1862:754–762CrossRef Van Kuilenburg ABP, Meijer J, Tanck MWT, Dobritzsch D, Zoetekouw L, Dekkers LL et al (2016) Phenotypic and clinical implications of variants in the dihydropyrimidine dehydrogenase gene. Biochim Biophys Acta 1862:754–762CrossRef
26.
Zurück zum Zitat Henricks LM, Jacobs BAW, Meulendijks D, Pluim D, van den Broek D, de Vries N et al (2018) Food-effect study on uracil and dihydrouracil plasma levels as marker for dihydropyrimidine dehydrogenase activity in human volunteers. Br J Clun Pharmacol 84:2761–2769CrossRef Henricks LM, Jacobs BAW, Meulendijks D, Pluim D, van den Broek D, de Vries N et al (2018) Food-effect study on uracil and dihydrouracil plasma levels as marker for dihydropyrimidine dehydrogenase activity in human volunteers. Br J Clun Pharmacol 84:2761–2769CrossRef
27.
Zurück zum Zitat Van Kuilenburg AB, Vreken P, Abeling NG, Bakker HD, Meinsma R, Van Lenthe H et al (1999) Genotype and phenotype in patients with dihydropyrimidine dehydrogenase deficiency. Hum Genet 104:1–9CrossRef Van Kuilenburg AB, Vreken P, Abeling NG, Bakker HD, Meinsma R, Van Lenthe H et al (1999) Genotype and phenotype in patients with dihydropyrimidine dehydrogenase deficiency. Hum Genet 104:1–9CrossRef
28.
Zurück zum Zitat Van Kuilenburg ABP, Meinsma JR, Zoetekouw L, van Gennip AH (2002) Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1G>A mutation. Int J Cancer 101:253–258CrossRef Van Kuilenburg ABP, Meinsma JR, Zoetekouw L, van Gennip AH (2002) Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1G>A mutation. Int J Cancer 101:253–258CrossRef
29.
Zurück zum Zitat Loganayagam A, Arenas-Hernandez M, Fairbanks L, Ross P, Sanderson JD, Marinaki AM (2010) The contribution of deleterious DPYD gene sequence variants to fluoropyrimidine toxicity in British cancer patients. Cancer Chemother Pharmacol 65:403–406CrossRef Loganayagam A, Arenas-Hernandez M, Fairbanks L, Ross P, Sanderson JD, Marinaki AM (2010) The contribution of deleterious DPYD gene sequence variants to fluoropyrimidine toxicity in British cancer patients. Cancer Chemother Pharmacol 65:403–406CrossRef
30.
Zurück zum Zitat Etienne-Grimaldi MC, Boyer JC, Beroud C, Mbatchi L, van Kuilenburg A, Bobin-Dubigeon C et al (2017) New advances in DPYD genotype and risk of severe toxicity under capecitabine. PLoS ONE 12(5):e0175998CrossRef Etienne-Grimaldi MC, Boyer JC, Beroud C, Mbatchi L, van Kuilenburg A, Bobin-Dubigeon C et al (2017) New advances in DPYD genotype and risk of severe toxicity under capecitabine. PLoS ONE 12(5):e0175998CrossRef
31.
Zurück zum Zitat Pallet N, Hamdane S, Garinet S, Blons H, Zaanan A, Paillaud E et al (2020) A comprehensive population-based study comparing the phenotype and genotype in a pretherapeutic screen of dihydropyrimidine dehydrogenase deficiency. Br J Cancer 123(5):811–818CrossRef Pallet N, Hamdane S, Garinet S, Blons H, Zaanan A, Paillaud E et al (2020) A comprehensive population-based study comparing the phenotype and genotype in a pretherapeutic screen of dihydropyrimidine dehydrogenase deficiency. Br J Cancer 123(5):811–818CrossRef
32.
Zurück zum Zitat Van Kuilenburg ABP, Meijer J, Mul ANPM, Hennekam RCM, Hoovers JMN, de Die-Smulders CEM et al (2009) Analysis of severely affected patients with dihydropyrimidine dehydrogenase deficiency reveals large intragenic rearrangements of DPYD and a de novo interstitial deletion del(1)(p13.3p21.3). Hum Genet 125:581–590CrossRef Van Kuilenburg ABP, Meijer J, Mul ANPM, Hennekam RCM, Hoovers JMN, de Die-Smulders CEM et al (2009) Analysis of severely affected patients with dihydropyrimidine dehydrogenase deficiency reveals large intragenic rearrangements of DPYD and a de novo interstitial deletion del(1)(p13.3p21.3). Hum Genet 125:581–590CrossRef
33.
Zurück zum Zitat Offer SM, Lee AM, Mattison LK, Fossum NJ, Wegner RB, Diasio RB (2019) A DPYD variant (Y186C) in individuals of African ancestry is associated with reduced DOD enzyme activity. Clin Pharmacol Ther 94:158–166CrossRef Offer SM, Lee AM, Mattison LK, Fossum NJ, Wegner RB, Diasio RB (2019) A DPYD variant (Y186C) in individuals of African ancestry is associated with reduced DOD enzyme activity. Clin Pharmacol Ther 94:158–166CrossRef
35.
Zurück zum Zitat Rosmarin D, Palles C, Pagnamenta A, Kaur K, Pita G, Martin M, Domingo E et al (2015) A candidate gene study of capecitabine-realted toxicity in colorectal cancer identifies new toxicity variants at DPYD and a putative role for ENOSF1 rather than TYMS. Gut 64:111–120CrossRef Rosmarin D, Palles C, Pagnamenta A, Kaur K, Pita G, Martin M, Domingo E et al (2015) A candidate gene study of capecitabine-realted toxicity in colorectal cancer identifies new toxicity variants at DPYD and a putative role for ENOSF1 rather than TYMS. Gut 64:111–120CrossRef
36.
Zurück zum Zitat Amirfallah A, Kocal GC, Unal OU, Ellidokuz H, Oztop I (2018) Basbinar Y (2020) DPYD, TYMS and MTHFR genes polymorphism frequencies in a series of Turkish colorectal cancer patients. J Pers Med 8(4):45CrossRef Amirfallah A, Kocal GC, Unal OU, Ellidokuz H, Oztop I (2018) Basbinar Y (2020) DPYD, TYMS and MTHFR genes polymorphism frequencies in a series of Turkish colorectal cancer patients. J Pers Med 8(4):45CrossRef
37.
Zurück zum Zitat Offer SM, Fossum CC, Wegner NJ, Stuflesser AJ, Butterfield GL, Diasio RB (2014) Comparative functional analysis of DPYD variants of potential clinical relevance to dihydropyrimidine dehydrogenase activity. Cancer Res 74(9):2545–2554CrossRef Offer SM, Fossum CC, Wegner NJ, Stuflesser AJ, Butterfield GL, Diasio RB (2014) Comparative functional analysis of DPYD variants of potential clinical relevance to dihydropyrimidine dehydrogenase activity. Cancer Res 74(9):2545–2554CrossRef
Metadaten
Titel
Preemptive screening of DPYD as part of clinical practice: high prevalence of a novel exon 4 deletion in the Finnish population
verfasst von
Jatta Saarenheimo
Nesna Wahid
Natalja Eigeliene
Ravichandra Ravi
Gajja S. Salomons
Matilde Fernandez Ojeda
Raymon Vijzelaar
Antti Jekunen
André B. P. van Kuilenburg
Publikationsdatum
05.02.2021
Verlag
Springer Berlin Heidelberg
Erschienen in
Cancer Chemotherapy and Pharmacology / Ausgabe 5/2021
Print ISSN: 0344-5704
Elektronische ISSN: 1432-0843
DOI
https://doi.org/10.1007/s00280-021-04236-y

Update Onkologie

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.