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Erschienen in: Archives of Virology 2/2020

01.02.2020 | Virology Division News

Proposed revision of the family Secoviridae taxonomy to create three subgenera, “Satsumavirus”, “Stramovirus” and “Cholivirus”, in the genus Sadwavirus

verfasst von: Hélène Sanfaçon, Indranil Dasgupta, Marc Fuchs, Alexander V. Karasev, Karel Petrzik, Jeremy R. Thompson, Ioannis Tzanetakis, René van der Vlugt, Thierry Wetzel, Nobuyuki Yoshikawa

Erschienen in: Archives of Virology | Ausgabe 2/2020

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Abstract

We present a taxonomic proposal for revision of the family Secoviridae, a taxon of plant viruses in the order Picornavirales. We propose the reorganization of the genus Sadwavirus to create three new subgenera and to update the classification of five existing species. The proposed subgenera are “Satsumavirus” (one species: Satsuma dwarf virus), “Stramovirus” (two species: Strawberry mottle virus and Black raspberry necrosis virus) and “Cholivirus” (two species: Chocolate lily virus A and Dioscorea mosaic associated virus).
Literatur
1.
Zurück zum Zitat Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfacon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ (2016) Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016). Arch Virol 161:2921–2949CrossRef Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfacon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ (2016) Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016). Arch Virol 161:2921–2949CrossRef
2.
Zurück zum Zitat Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfacon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ (2017) Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017). Arch Virol 162:2505–2538CrossRef Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfacon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ (2017) Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017). Arch Virol 162:2505–2538CrossRef
3.
Zurück zum Zitat Bhagwat B, Dickison V, Ding X, Walker M, Bernardy M, Bouthillier M, Creelman A, DeYoung R, Li Y, Nie X, Wang A, Xiang Y, Sanfacon H (2016) Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with increased coding capacity compared to a previously characterized European isolate. Arch Virol 161:1657–1663CrossRef Bhagwat B, Dickison V, Ding X, Walker M, Bernardy M, Bouthillier M, Creelman A, DeYoung R, Li Y, Nie X, Wang A, Xiang Y, Sanfacon H (2016) Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with increased coding capacity compared to a previously characterized European isolate. Arch Virol 161:1657–1663CrossRef
4.
Zurück zum Zitat Fuchs M, Schmitt-Keichinger C, Sanfacon H (2017) A renaissance in nepovirus research provides new insights into yheir molecular interface with hosts and vectors. Adv Virus Res 97:61–105CrossRef Fuchs M, Schmitt-Keichinger C, Sanfacon H (2017) A renaissance in nepovirus research provides new insights into yheir molecular interface with hosts and vectors. Adv Virus Res 97:61–105CrossRef
5.
Zurück zum Zitat Halgren A, Tzanetakis IE, Martin RR (2007) Identification, characterization and detection of black raspberry necrosis virus. Phytopathology 97:44–50CrossRef Halgren A, Tzanetakis IE, Martin RR (2007) Identification, characterization and detection of black raspberry necrosis virus. Phytopathology 97:44–50CrossRef
6.
Zurück zum Zitat Hayashi EA, Blawid R, de Melo FL, Andrade MS, Pio-Ribeiro G, de Andrade GP, Nagata T (2017) Complete genome sequence of a putative new secovirus infecting yam (Dioscorea) plants. Arch Virol 162:317–319CrossRef Hayashi EA, Blawid R, de Melo FL, Andrade MS, Pio-Ribeiro G, de Andrade GP, Nagata T (2017) Complete genome sequence of a putative new secovirus infecting yam (Dioscorea) plants. Arch Virol 162:317–319CrossRef
7.
Zurück zum Zitat Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones T, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N (2007) Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Arch Virol 159:1767–1774CrossRef Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones T, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N (2007) Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Arch Virol 159:1767–1774CrossRef
8.
Zurück zum Zitat Le Gall O, Christian P, Fauquet CM, King AM, Knowles NJ, Nakashima N, Stanway G, Gorbalenya AE (2008) Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture. Arch Virol 153:715–727CrossRef Le Gall O, Christian P, Fauquet CM, King AM, Knowles NJ, Nakashima N, Stanway G, Gorbalenya AE (2008) Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture. Arch Virol 153:715–727CrossRef
9.
Zurück zum Zitat Mann KS, Walker M, Sanfacon H (2017) Identification of cleavage sites recognized by the 3C-like cysteine protease within the two polyproteins of strawberry mottle virus. Front Microbiol 8:745CrossRef Mann KS, Walker M, Sanfacon H (2017) Identification of cleavage sites recognized by the 3C-like cysteine protease within the two polyproteins of strawberry mottle virus. Front Microbiol 8:745CrossRef
10.
Zurück zum Zitat Mann KS, Walker MC, Sanfacon H (2017) Corrigendum: Identification of cleavage sites recognized by the 3C-like cysteine protease within the two polyproteins of strawberry mottle virus. Front Microbiol 8:1762CrossRef Mann KS, Walker MC, Sanfacon H (2017) Corrigendum: Identification of cleavage sites recognized by the 3C-like cysteine protease within the two polyproteins of strawberry mottle virus. Front Microbiol 8:1762CrossRef
12.
Zurück zum Zitat Mann KS, Sanfacon H (2019) Expanding repertoire of plant positive-strand RNA virus proteases. Viruses 11:66CrossRef Mann KS, Sanfacon H (2019) Expanding repertoire of plant positive-strand RNA virus proteases. Viruses 11:66CrossRef
13.
Zurück zum Zitat Sanfacon H, Wellink J, Le Gall O, Karasev A, van der Vlugt R, Wetzel T (2009) Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus. Arch Virol 154:899–907CrossRef Sanfacon H, Wellink J, Le Gall O, Karasev A, van der Vlugt R, Wetzel T (2009) Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus. Arch Virol 154:899–907CrossRef
14.
Zurück zum Zitat Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfacon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ (2019) Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018). Arch Virol 164:943–946CrossRef Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfacon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ (2019) Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018). Arch Virol 164:943–946CrossRef
15.
Zurück zum Zitat Thompson JR, Leone G, Lindner JL, Jelkmann W, Schoen CD (2002) Characterization and complete nucleotide sequence of strawberry mottle virus: a tentative member of a new family of bipartite plant picorna-like viruses. J Gen Virol 83:229–239CrossRef Thompson JR, Leone G, Lindner JL, Jelkmann W, Schoen CD (2002) Characterization and complete nucleotide sequence of strawberry mottle virus: a tentative member of a new family of bipartite plant picorna-like viruses. J Gen Virol 83:229–239CrossRef
16.
Zurück zum Zitat Thompson JR, Dasgupta I, Fuchs M, Iwanami T, Karasev AV, Petrzik K, Sanfacon H, Tzanetakis I, van der Vlugt R, Wetzel T, Yoshikawa N, ICTV_Report_Consortium (2017) ICTV virus taxonomy profile: Secoviridae. J Gen Virol 98:529–531CrossRef Thompson JR, Dasgupta I, Fuchs M, Iwanami T, Karasev AV, Petrzik K, Sanfacon H, Tzanetakis I, van der Vlugt R, Wetzel T, Yoshikawa N, ICTV_Report_Consortium (2017) ICTV virus taxonomy profile: Secoviridae. J Gen Virol 98:529–531CrossRef
17.
Zurück zum Zitat Wang A, Sanfacon H (2000) Proteolytic processing at a novel cleavage site in the N-terminal region of the tomato ringspot nepovirus RNA-1-encoded polyprotein in vitro. J Gen Virol 81:2771–2781CrossRef Wang A, Sanfacon H (2000) Proteolytic processing at a novel cleavage site in the N-terminal region of the tomato ringspot nepovirus RNA-1-encoded polyprotein in vitro. J Gen Virol 81:2771–2781CrossRef
18.
Zurück zum Zitat Wetzel T, Chisholm J, Bassler A, Sanfacon H (2008) Characterization of proteinase cleavage sites in the N-terminal region of the RNA1-encoded polyprotein from Arabis mosaic virus (subgroup A nepovirus). Virology 375:159–169CrossRef Wetzel T, Chisholm J, Bassler A, Sanfacon H (2008) Characterization of proteinase cleavage sites in the N-terminal region of the RNA1-encoded polyprotein from Arabis mosaic virus (subgroup A nepovirus). Virology 375:159–169CrossRef
19.
Zurück zum Zitat Wylie SJ, Luo H, Li H, Jones MG (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157:271–284CrossRef Wylie SJ, Luo H, Li H, Jones MG (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157:271–284CrossRef
Metadaten
Titel
Proposed revision of the family Secoviridae taxonomy to create three subgenera, “Satsumavirus”, “Stramovirus” and “Cholivirus”, in the genus Sadwavirus
verfasst von
Hélène Sanfaçon
Indranil Dasgupta
Marc Fuchs
Alexander V. Karasev
Karel Petrzik
Jeremy R. Thompson
Ioannis Tzanetakis
René van der Vlugt
Thierry Wetzel
Nobuyuki Yoshikawa
Publikationsdatum
01.02.2020
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 2/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-019-04468-7

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