LOCUS       BSeq#1                  1503 bp    DNA     linear       12-JUN-2018
DEFINITION  Polyscias mosaic virus isolate NGA.
ACCESSION   BSeq#1
VERSION
KEYWORDS    .
SOURCE      Polyscias mosaic virus
  ORGANISM  Polyscias mosaic virus
            Unclassified.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Alvarez-Quinto,R.A. and Lockhart,B.E.L.
  TITLE     Complete genome sequence of a new badnavirus isolated from ming
            aralia (Polyscias fruticosa L. Harms)
  JOURNAL   unpublished
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Alvarez-Quinto,R.A. and Lockhart,B.E.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2018) Plant Pathology, University of Minnesota,
            1991 Upper Buford Circle, St. Paul, MN 55108, USA
COMMENT     Bankit Comment: ALT EMAIL: lockh002@umn.edu
            Bankit Comment: TOTAL # OF SEQS:1
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Polyscias mosaic virus"
                     /mol_type="genomic DNA"
                     /isolate="NGA"
                     /host="Polyscias sp."
                     /country="Nigeria"
                     /collection_date="01-Sep-2017"
                     /collected_by="Lockhart, B.E.L"
     CDS             <1..1044
                     /note="Partial badnavirus polyprotein, RT and RNAse H
                     domains"
                     /codon_start=1
                     /product="ORF3, partial polyprotein"
                     /translation="YIDDILVFSKNEKDHLRHLEIMFSLVEKHGLVLSPTKMKIGVHS
                     IGFLGAQIEDGKLKLQEHILKKILKFGPAQFATKKDLRSWLGILNYSRNYIANLGKLL
                     GPLYAKTSPQGEIRMNDQDWKIVREIQAKVKNLAPLEFPPTSQVTIILETDGCMTGWG
                     AICKWKEKEFDPQKSERICAYASGVFSTVKSTIDAEINAVLHALESFKIFYLDQKGII
                     IRTDCQAIITFFNKSFNHKPSRVRWIRFIDFITGIGISYKFEHIKGEANQLADHLSRH
                     TSAKQLSQIVGLLTLKWQQTQKEEVQVIMEAVHLPATSELIRLLNSWIITSKNWIVGQ
                     KREKAGLFHFEPP"
     primer_bind     1..17
                     /note="Badna 2"
     primer_bind     1487..1503
                     /note="Badna T"
BASE COUNT      478 a    287 c    302 g    434 t      2 others
ORIGIN      
        1 tatatagatg atattttggt attttccaag aacgagaagg atcacctccg tcatttggag
       61 ataatgttca gtttagtcga aaagcatggt ctagtactca gcccaacaaa aatgaagata
      121 ggagtccatt ctattggatt tctaggagcc caaattgaag atggaaaatt gaaattgcaa
      181 gagcacattc tgaagaagat tctgaaattc ggcccagccc aatttgcaac caagaaagac
      241 cttcgatcat ggttaggtat ccttaactat agtcgaaact atattgccaa ccttggtaaa
      301 cttcttggtc ccctctatgc aaagacaagt ccacaaggag aaattcggat gaatgatcaa
      361 gactggaaga tagtgcgtga aattcaagca aaggtgaaga atctagcccc actagaattc
      421 ccaccaacaa gtcaagtcac aatcattcta gagaccgatg gatgtatgac aggatgggga
      481 gctatctgca agtggaagga aaaggaattt gatccacaaa aatcagaaag aatctgtgca
      541 tatgcaagtg gagtcttttc aaccgtcaaa tcaacgatag atgccgaaat taatgcggtc
      601 ctacatgcgt tggaaagctt caaaatattc tatcttgatc agaaaggaat aattattcgc
      661 actgactgtc aggcaataat tactttcttt aataaaagtt ttaaccacaa gccttcacgt
      721 gttagatgga tacgtttcat cgatttcatt acaggaatcg gtatttcgta caagttcgag
      781 catataaaag gagaagcaaa ccagcttgct gatcatctca gtcgacatac gtcagcaaaa
      841 cagctttcac agatagttgg tttactaacc ctaaaatggc agcaaacaca gaaggaagaa
      901 gtgcaggtta tcatggaagc agttcatcta ccagcaacgt ccgagctgat tcgcttattg
      961 aactcttgga taattacctc aaagaactgg atagttggac agaagcgtga aaaggcaggg
     1021 ttgtttcatt ttgaaccacc ttgaaggaag aaagaaagga agcatggtta gggcccatga
     1081 ttaaaaccct acagctttat ttacattgtc gtgtaatgtt tgtataagaa tctgctggct
     1141 ctcttttgag acaaatgtga ccgtccatgt gtcatagtca gctttttctt tattttatct
     1201 ttttgcgaga gataatgcgt cttgaataat tcgctatggg gcccaatgcg cacccggaat
     1261 tattattcgc ttattttcta cgctagtgtg ctatgcttcg cctatataag gagcattaga
     1321 tctatgtttt aggtacacca caacttagag aaaacctcta agcttgtaat acctctcttt
     1381 gtatcttttc tttcactctg ataaataaag catagttcat attgtgttct gtaaatcttt
     1441 ccaaagtttg aacaagatcc ttatccgcta tatgtacccc ctattttggt atcagagcyw
     1501 tgg
//