nach oben

Erschienen in:

28.09.2022 | Original Article

Rotavirus C infections in asymptomatic piglets in India, 2009-2013: genotyping and phylogenetic analysis of all genomic segments

verfasst von: Madhuri S. Joshi, Shalu A. Arya, Manohar S. Shinde, Vijay C. Ingle, Hemant S. Birade, Varanasi Gopalkrishna

Erschienen in: Archives of Virology | Ausgabe 12/2022

Einloggen, um Zugang zu erhalten

Abstract

Asymptomatic infection with rotavirus C (RVC) was observed in pigs in India, with a detection rate of 20%. Sequencing of the VP6, VP7, and NSP4 genes of RVC strains identified the genotypes I7/I10, G1, and E5, respectively. Full genome sequencing of one of these strains revealed that the genotypes of the VP4, VP1, VP2, VP3, NSP1, NSP2, NSP3, and NSP5 genes were P1, R1, C1, M3, A1, N5, T5, and H1, respectively. The detection of porcine RVC strains at two different locations in India at different time points strongly suggests that they are circulating continuously in the pig population through asymptomatic infections.

Nur mit Berechtigung zugänglich

Kim Y, Chang KO, Straw B, Saif LJ (1999) Characterization of group C rotaviruses associated with diarrhea outbreaks in feeder pigs. J Clin Microbiol 37(5):1484–1488. https://doi.org/10.1128/JCM.37.5.1484-1488.1999CrossRef

Joshi MS, Jare VM, Gopalkrishna V (2017) Group C rotavirus infection in patients with acute gastroenteritis in outbreaks in western India between 2006 and 2014. Epidemiol Infect 145(2):310–315. https://doi.org/10.1017/S0950268816002363CrossRef

Saif LJ, Jiang B (1994) Nongroup A rotaviruses of humans and animals. Curr Top Microbiol Immunol 185:339–371. https://doi.org/10.1007/978-3-642-78256-5_11CrossRef

Marthaler D, Rossow K, Culhane M, Collins J, Goyal S, Ciarlet M, Matthijnssens J (2013) Identification, phylogenetic analysis, and classification of porcine group C rotavirus VP7 sequences from the United States and Canada. Virology 446(1–2):189–198. https://doi.org/10.1016/j.virol.2013.08.001CrossRef

Collins PJ, Martella V, O’Shea H (2008) Detection and characterization of group C rotaviruses in asymptomatic piglets in Ireland. J Clin Microbiol 46(9):2973–2979. https://doi.org/10.1128/JCM.00809-08CrossRef

Smitalova R, Rodak L, Smid B, Psikal I (2009) Detection of nongroup A rotaviruses in fecal samples of pigs in the Czech Republic. Vet Med 54:12–18CrossRef

Marthaler D, Homwong N, Rossow K, Culhane M, Goyal S, Collins J, Matthijnssens J, Ciarlet M (2014) Rapid detection and high occurrence of porcine rotavirus A, B, and C by RT-qPCR in diagnostic samples. J Virol Methods 209:30–34. https://doi.org/10.1016/j.jviromet.2014.08.018CrossRef

Chepngeno J, Diaz A, Paim FC, Saif LJ, Vlasova AN (2019) Rotavirus C: prevalence in suckling piglets and development of virus-like particles to assess the influence of maternal immunity on the disease development. Vet Res 50(1):84. https://doi.org/10.1186/s13567-019-0705-4CrossRef

Theuns S, Vyt P, Desmarets LMB, Roukaerts IDM, Heylen E, Zeller M, Matthijnssens J, Nauwynck HJ (2016) Presence and characterization of pig group A and C rotaviruses in feces of Belgian diarrheic suckling piglets. Virus Res 2(213):172–183. https://doi.org/10.1016/j.virusres.12.004CrossRef

10.

Molinari BL, Possatti F, Lorenzetti E, Alfieri AF, Alfieri AA (2016) Unusual outbreak of post-weaning porcine diarrhea caused by single and mixed infections of rotavirus groups A, B, C, and H. Vet Microbiol 25(193):125–132. https://doi.org/10.1016/j.vetmic.2016.08.014CrossRef

11.

Trovão NS, Shepherd FK, Herzberg K, Jarvis MC, Lam HC, Rovira A, Culhane MR, Nelson MI, Marthaler DG (2019) Evolution of rotavirus C in humans and several domestic animal species. Zoonoses Public Health 66(5):546–557. https://doi.org/10.1111/zph.12575CrossRef

12.

Peng R, Li DD, Cai K, Qin JJ, Wang YX, Lin Q, Guo YQ, Zhao CY, Duan ZJ (2013) The epidemiological characteristics of group C rotavirus in Lulong area and the analysis of the diversity of the VP6 gene. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi 27(3):164–166 (Chinese). PMID: 24319945.

13.

Suzuki T, Hasebe A, Miyazaki A, Tsunemitsu H (2014) Phylogenetic characterization of VP6 gene (inner capsid) of porcine rotavirus C collected in Japan. Infect Genet Evol 26:223–227. https://doi.org/10.1016/j.meegid.2014.05.024CrossRef

14.

Suzuki T, Hasebe A, Miyazaki A, Tsunemitsu H (2015) Analysis of genetic divergence among strains of porcine rotavirus C, with focus on VP4 and VP7 genotypes in Japan. Virus Res 2(197):26–34. https://doi.org/10.1016/j.virusres.2014.12.002CrossRef

15.

Suzuki T, Hasebe A (2017) A provisional complete genome-based genotyping system for rotavirus species C from terrestrial mammals. J Gen Virol 98(11):2647–2662. https://doi.org/10.1099/jgv.0.000953CrossRef

16.

Kattoor JJ, Saurabh S, Malik YS, Sircar S, Dhama K, Ghosh S, Bányai K, Kobayashi N, Singh RK (2017) Unexpected detection of porcine rotavirus C strains carrying human origin VP6 gene. Vet Q 37(1):252–261. https://doi.org/10.1080/01652176.2017.1346849CrossRef

17.

Hull JJA, Qi M, Montmayeur AM, Kumar D, Velasquez DE, Moon SS, Magaña LC, Betrapally N, Ng TFF, Jiang B, Marthaler D (2020) Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States. PLoS ONE 15(12):e0244498. https://doi.org/10.1371/journal.pone.0244498CrossRef

18.

Tatte VS, Jadhav M, Ingle VC, Gopalkrishna V (2019) Molecular characterization of group A rotavirus (RVA) strains detected in bovine and porcine species: circulation of unusual rotavirus strains. A study from western, India. Acta Virol 63(1):103–110. https://doi.org/10.4149/av_2019_113CrossRef

19.

Lahon A, Ingle VC, Birade HS, Raut CG, Chitambar SD (2014) Molecular characterization of group B rotavirus circulating in pigs from India: Identification of a strain bearing a novel VP7 genotype, G21. Vet Microbiol 174:342–352. https://doi.org/10.1016/j.vetmic.2014.10.017CrossRef

20.

Soma J, Tsunemitsu H, Miyamoto T, Suzuki G, Sasaki T, Suzuki T (2013) Whole-genome analysis of two bovine rotavirus C strains: Shintoku and Toyama. J Gen Virol 94(Pt 1):128–135. https://doi.org/10.1099/vir.0.046763-0CrossRef

21.

Joshi MS, Walimbe AM, Dilpak SP, Cherian SS, Gopalkrishna V (2019) Whole-genome-based characterization of three human Rotavirus C strains isolated from gastroenteritis outbreaks in Western India and a provisional intra-genotypic lineage classification system. J Gen Virol 100(7):1055–1072. https://doi.org/10.1099/jgv.0.001284CrossRef

22.

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725–2729. https://doi.org/10.1093/molbev/mst197CrossRef

23.

Amimo JO, Vlasova AN, Saif LJ (2013) Prevalence and genetic heterogeneity of porcine group C rotaviruses in nursing and weaned piglets in Ohio, USA and identification of a potential new VP4 genotype. Vet Microbiol 164(1–2):27–38. https://doi.org/10.1016/j.vetmic.01.039CrossRef

24.

Amimo JO, Machuka EM, Okoth E (2017) First detection of rotavirus group C in asymptomatic pigs of smallholder farms in East Africa. Pathogens 6(3):37; 1-5. https://doi.org/10.3390/pathogens6030037 CrossRef

25.

Ojobor CD, Olovo CV, Onah LO, Ike AC (2020) Prevalence and associated factors to rotavirus infection in children less than 5 years in Enugu State, Nigeria. Virusdisease 31(3):1–7. https://doi.org/10.1007/s13337-020-00614-xCrossRef

26.

Joshi MS, Deore SG, Walimbe AM, Ranshing SS, Chitambar SD (2019) Evaluation of different genomic regions of Rotavirus A for development of real time PCR. J Virol Methods 266:65–71. doi: 10.1016/j.jviromet.2019.01.017CrossRef

27.

Wang Y, Porter EP, Lu N, Zhu C, Noll LW, Hamill V, Brown SJ, Palinski RM, Bai J (2021) Whole-genome classification of rotavirus C and genetic diversity of porcine strains in the USA. J Gen Virol 103(2). https://doi.org/10.1099/jgv.0.001598CrossRef

28.

Niira K, Ito M, Masuda T, Saitou T, Abe T, Komoto S, Sato M, Yamasato H, Kishimoto M, Naoi Y, Sano K, Tuchiaka S, Okada T, Omatsu T, Furuya T, Aoki H, Katayama Y, Oba M, Shirai J, Taniguchi K, Mizutani T, Nagai M (2016) Whole-genome sequences of Japanese porcine species C rotaviruses reveal a high diversity of genotypes of individual genes and will contribute to a comprehensive, generally accepted classification system. Infect Genet Evol 44:106–113. https://doi.org/10.1016/j.meegid.2016.06.041CrossRef

29.

Theuns S, Conceição-Neto N, Zeller M, Heylen E, Roukaerts ID, Desmarets LM, Van Ranst M, Nauwynck HJ, Matthijnssens J (2016) Characterization of a genetically heterogeneous porcine rotavirus C, and other viruses present in the fecal virome of a non-diarrheic Belgian piglet. Infect Genet Evol 43:135–145. https://doi.org/10.1016/j.meegid.2016.05.018CrossRef

30.

Yamamoto D, Ghosh S, Kuzuya M, Wang YH, Zhou X, Chawla-Sarkar M, Paul SK, Ishino M, Kobayashi N (2011) Whole-genome characterization of human group C rotaviruses: identification of two lineages in the VP3 gene. J Gen Virol 92(Pt 2):361–369. https://doi.org/10.1099/vir.0.027375-0CrossRef

31.

Moutelíková R, Prodělalová J, Dufková L (2015) Diversity of VP7, VP4, VP6, NSP2, NSP4, and NSP5 genes of porcine rotavirus C: phylogenetic analysis and description of potential new VP7, VP4, VP6, and NSP4 genotypes. Arch Virol 160:1715–1727. https://doi.org/10.1007/s00705-015-2438-7CrossRef

32.

Pitzer VE, Viboud C, Lopman BA, Patel MM, Parashar UD, Grenfell BT (2011) Influence of birth rates and transmission rates on the global seasonality of rotavirus incidence. J R Soc Interface 8(64):1584–1593. https://doi.org/10.1098/rsif.2011.0062CrossRef

33.

Atchison C, Iturriza-Gómara M, Tam C, Lopman B (2010) Spatiotemporal dynamics of rotavirus disease in Europe: can climate or demographic variability explain the patterns observed. Pediatr Infect Dis J 29(6):566–568. https://doi.org/10.1097/INF.0b013e3181d06fcdCrossRef

34.

Phan MVT, Anh PH, Cuong NV, Munnink BBO, van der Hoek L, My PT, Tri TN, Bryant JE, Baker S, Thwaites G, Woolhouse M, Kellam P, Rabaa MA, Cotten M, VIZIONS Consortium (2016) Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. Virus Evol 2(2):vew027. https://doi.org/10.1093/ve/vew027CrossRef

35.

Zhang K, Hodge J, Chatterjee A, Moon TS, Parker KM (2021) Duplex structure of double-stranded RNA provides stability against hydrolysis relative to single-stranded RNA. Environ Sci Technol 55(12):8045–8053. https://doi.org/10.1021/acs.est.1c01255CrossRef

36.

Chang KO, Nielsen PR, Ward LA, Saif LJ (1999) Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences the pathogenesis of the group C rotavirus. J Virol 73(11):9284–9293. https://doi.org/10.1128/JVI.73.11.9284-9293.1999CrossRef

37.

Gabbay YB, Borges AA, Oliveira DS, Linhares AC, Mascarenhas JD, Barardi CR, Simões CM, Wang Y, Glass RI, Jiang B (2008) Evidence for zoonotic transmission of group C rotaviruses among children in Belém, Brazil. J Med Virol 80(9):1666–1674. https://doi.org/10.1002/jmv.21250CrossRef

38.

Jeong YJ, Park SI, Hosmillo M, Shin DJ, Chun YH, Kim HJ, Kwon HJ, Kang SY, Woo SK, Park SJ, Kim GY, Kang MI, Cho KO (2009) Detection and molecular characterization of porcine group C rotaviruses in South Korea. Vet Microbiol 138(3–4):217–224. https://doi.org/10.1016/j.vetmic.2009.03.024CrossRef

39.

Oki H, Masuda T, Hayashi-Miyamoto M, Kawai M, Ito M, Madarame H, Fukase Y, Takemae H, Sakaguchi S, Furuya T, Mizutani T, Oba M, Nagai M (2022) Genomic diversity and intragenic recombination of species C rotaviruses. J Gen Virol 103(2). https://doi.org/10.1099/jgv.0.001703CrossRef

40.

Iturriza-Gomara M, Clarke I, Ulrich D, Brown D, Daniel T, Gray J (2004) Seroepidemiology of group C rotavirus infection in England and Wales. Eur J Epidemiol 19(6):589–595. https://doi.org/10.1023/b:ejep.0000032381.36658.cbCrossRef

Titel: Rotavirus C infections in asymptomatic piglets in India, 2009-2013: genotyping and phylogenetic analysis of all genomic segments
verfasst von: Madhuri S. Joshi
Shalu A. Arya
Manohar S. Shinde
Vijay C. Ingle
Hemant S. Birade
Varanasi Gopalkrishna
Publikationsdatum: 28.09.2022
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 12/2022
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-022-05607-3

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

^{Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag}

Kostenlos registrieren

Neu im Fachgebiet Innere Medizin

19.04.2024 | Vorhofflimmern | Nachrichten

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.

Newsletter bestellen

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Rotavirus C infections in asymptomatic piglets in India, 2009-2013: genotyping and phylogenetic analysis of all genomic segments

Abstract

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin

Live-Webinar: Aktuelle Leitlinien bei Herz-Kreislauf-Erkrankungen

Springer Medizin

Abstract

Bitte loggen Sie sich ein, um Zugang zu diesem Inhalt zu erhalten

Weitere Artikel der Ausgabe 12/2022

Escherichia coli phage phi2013: genomic analysis and receptor identification

Prevalence of hepatitis C virus infection in patients with end-stage renal disease in Latin America and the Caribbean: a systematic review and meta-analysis

Acute transcriptomic changes in murine RAW 264.7 cells following pseudorabies virus infection

Discovery of three cycloviruses in fecal samples from silver-haired bats (Lasionycteris noctivagans) in Arizona (USA)

Genome sequence of pineapple secovirus B, a second sadwavirus reported infecting Ananas comosus

Molecular and biological characterization of an isolate of the potyvirus passiflora virus Y naturally infecting soybean (Glycine max) in Brazil

Leitlinien kompakt für die Innere Medizin

Neu im Fachgebiet Innere Medizin

Parodontalbehandlung verbessert Prognose bei Katheterablation

Prostatakarzinom: EU initiiert neues Screeningkonzept

Blasenkarzinom – Biomarker statt Zytologie?

Antihypertensiva schützen auch alte Menschen noch vor Demenz

Update Innere Medizin