Background
Methods
Population and sampling
DNA analysis
DNA sequencing analysis
Ethical considerations
Results
Positive samples |
cagA
|
s1a
|
s1b
|
s1c
|
s2
|
m1a
|
m1b
|
m2
|
---|---|---|---|---|---|---|---|---|
Cow
| 4 | 5 | 1 | 0 | 0 | 2 | 0 | 4 |
6 (3%)
| (66.66%) | (83.33%) | (16.66%) | (33.33%) | (66.66%) | |||
Sheep
| 24 | 16 | 11 | 0 | 5 | 14 | 0 | 18 |
32 (16%)
| (75%) | (50%) | (34.37%) | (15.62%) | (43.75%) | (56.25%) | ||
Human
| 151 | 79 | 21 | 35 | 29 | 52 | 15 | 97 |
164 (82%)
| (92.08%) | (48.17%) | (12.80%) | (21.34%) | (17.68%) | (31.70%) | (9.14%) | (59.14%) |
Positive samples |
s1a/m1a
|
s1a/m1b
|
s1a/m2
|
s1b/m1a
|
s1b/m1b
|
s1b/m2
|
s1c/m1a
|
s1c/m1b
|
s1c/m2
|
s2/m1a
|
s2/m1b
|
s2/m2
|
---|---|---|---|---|---|---|---|---|---|---|---|---|
Cow
| 2 | 0 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
6 (3%)
| (33.33%) | (50%) | (16.66%) | |||||||||
Sheep
| 6 | 0 | 10 | 5 | 0 | 6 | 0 | 0 | 0 | 1 | 0 | 4 |
32 (16%)
| (18.75%) | (31.25%) | (15.62%) | (18.75%) | (3.12%) | (12.5%) | ||||||
Human
| 27 | 8 | 45 | 7 | 5 | 10 | 12 | 4 | 18 | 6 | 0 | 22 |
164 (82%)
| (16.46%) | (4.87%) | (27.43%) | (4.26%) | (3.04%) | (6.09%) | (7.31%) | (2.43%) | (10.97%) | (3.65%) | (13.41%) |
Seq | Cow-1 | Cow-2 | Cow-3 | Sheep-1 | Sheep-2 | Sheep-3 | FN598874-Germany | CP003476-USA | DQ462665-Iran | GU445163-Iran | M60398-France | NC017361-S Africa | DQ141576-China | AB664954-Japan |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cow-1
| ID | 0.999 | 1 | 0.989 | 0.987 | 0.991 | 0.953 | 0.962 | 0.932 | 0.941 | 0.928 | 0.920 | 0.926 | 0.926 |
Cow-2
| 0.999 | ID | 0.999 | 0.987 | 0.988 | 0.986 | 0.950 | 0.966 | 0.936 | 0.940 | 0.929 | 0.918 | 0.924 | 0.923 |
Cow-3
| 1 | 0.999 | ID | 0.992 | 0.986 | 0.993 | 0.927 | 0.964 | 0.932 | 0.944 | 0.930 | 0.916 | 0.922 | 0.923 |
Sheep-1
| 0.989 | 0.987 | 0.991 | ID | 1 | 0.998 | 0.983 | 0.979 | 0.976 | 0.973 | 0.967 | 0.937 | 0.952 | 0.954 |
Sheep-2
| 0.987 | 0.988 | 0.986 | 1 | ID | 0.999 | 0.985 | 0.981 | 0.978 | 0.981 | 0.966 | 0.934 | 0.958 | 0.959 |
Sheep-3
| 0.991 | 0.986 | 0.993 | 0.998 | 0.999 | ID | 0.980 | 0.983 | 0.969 | 0.980 | 0.964 | 0.929 | 0.961 | 0.962 |
FN598874-Germany
| 0.953 | 0.950 | 0.957 | 0.983 | 0.985 | 0.980 | ID | 0.986 | 0.992 | 0.991 | 0.985 | 0.983 | 0.976 | 0.984 |
CP003476-USA
| 0.962 | 0.966 | 0.964 | 0.979 | 0.981 | 0.983 | 0.986 | ID | 0.990 | 0.993 | 0.984 | 0.979 | 0.980 | 0.983 |
DQ462665-Iran
| 0.932 | 0.936 | 0.932 | 0.976 | 0.978 | 0.969 | 0.992 | 0.990 | ID | 1 | 0.982 | 0.969 | 0.983 | 0.986 |
GU445163-Iran
| 0.941 | 0.940 | 0.944 | 0.973 | 0.981 | 0.980 | 0.991 | 0.993 | 1 | ID | 0.985 | 0.970 | 0.986 | 0.989 |
M60398-France
| 0.928 | 0.929 | 0.930 | 0.967 | 0.966 | 0.964 | 0.985 | 0.984 | 0.982 | 0.985 | ID | 0.975 | 0.990 | 0.991 |
NC017361-S Africa
| 0.920 | 0.918 | 0.916 | 0.937 | 0.934 | 0.929 | 0.983 | 0.979 | 0.969 | 0.970 | 0.975 | ID | 0.993 | 0.989 |
DQ141576-China
| 0.926 | 0.924 | 0.922 | 0.952 | 0.958 | 0.961 | 0.976 | 0.980 | 0.983 | 0.986 | 0.990 | 0.993 | ID | 0.994 |
AB664954-Japan
| 0.926 | 0.923 | 0.923 | 0.954 | 0.959 | 0.962 | 0.984 | 0.983 | 0.986 | 0.989 | 0.991 | 0.989 | 0.994 | ID |