Clinical trials of anti-PD therapy in advanced CCA have so far failed to show a higher treatment response compared with standard chemotherapies. We first tested the therapeutic efficacy of anti-PD-1 therapy in immunocompetent murine iCCAs. Hydrodynamic tail vein injection was performed to deliver plasmids encoding for AKT and NICD (activated form of NOTCH) into C57BL/6 mouse livers, a well-established murine spontaneous iCCA model (FAN et al.
2012). Compared to control IgG, treatment with anti-PD-1 therapy had limited effect on tumor formation and progression (Fig.
1A-B), indicating that murine iCCAs have poor response to anti-PD-1 monotherapy. To explore the potential mechanisms underlying poor response to ICBs and explore a more rational ICB-based therapy in iCCA, we analyzed the scRNA-seq dataset GSE151530 (MA et al.
2021), which included 12 iCCA biopsies collected at different time points during ICBs therapy. We annotated six major cell subsets using known marker genes, including B cells, CAFs, Malignant cells, T cells, TAMs, and TECs (Fig.
1C). Next, we performed differential analysis of malignant cells from ICBs-treated group and untreated group, and found that 118 genes were upregulated in single malignant cells following ICBs therapy (Fig.
1D). Among them, 40 genes were associated with poor prognosis in both FU-iCCA Cohort and ICGC Cohort (Fig.
1E). The drug-gene interaction database (DGIdb) database was then used to identify the potential drug targets in the screened genes (Fig.
1F), and NT5E/CD73 was reported to be associated with poor prognosis in a variety of tumors. CD73 encoded by NT5E gene can catalyze AMP to adenosine, and adenosine produced by hydrolysis can induce immunosuppression and angiogenesis, which is a novel target for tumor immunotherapy. Single cell atlas showed high expression of CD73 on malignant cells (Fig.
1G). Immunohistochemical analysis showed that CD73 expression was up-regulated in iCCA tissues of mice treated with PD-1 antibodies (Fig.
1H). High expression of CD73 is associated with T cell dysfunction in FU-iCCA Cohort and anti-PD-1 treatment resistance in the renal cell carcinoma (RCC) cohort (Fig.
1I-J). Kaplan-Meier survival analyses showed that in FU-iCCA cohort and ICGC cohort, patients with high CD73 mRNA expression had significantly shorter OS (Fig.
1K-L). In CCA protein cohort (DENG and RAN
2023), patients with higher CD73 protein level based on the proteomic data had worse prognosis (Fig.
1M). Taken together, these data suggested that upregulated CD73 expression in malignant cells following ICBs therapy could account for the poor response to ICBs in iCCA.