Background
The development and progression of breast cancer is the result of multiple genetic changes, which lead to complex alterations in signal transduction networks in breast cancer cells relative to their normal epithelial counterparts. Signaling differences between tumor and normal cells are reflected in altered gene expression patterns, a finding that has been widely investigated using various molecular techniques. Patterns of differential gene expression have been used for classification and prognostication of certain cancers and may be valuable for prospectively predicting responsiveness to therapeutic treatments [
1]. In addition to serving as biomarkers, some differentially expressed gene products have been informative in defining the physiological differences between normal and cancer cells. In order to understand the impact of dysregulated signaling pathways upon gene expression and function, it is necessary to connect differential gene expression to upstream signaling pathways.
Ras activation is a common intermediary in signaling pathways initiated by a variety of cell surface receptors, and signaling pathways downstream of Ras have been implicated repeatedly in oncogenesis. Ras proteins are frequently mutated to an activated form in human cancers, particularly in tumors of the pancreas, colon, thyroid, and lung [
2]. Ras mutations are rare in breast cancer, where the mutation rate is less than 5% [
3]. However, Ras signaling is hyperactive in many primary breast tumors [
4]. This is most likely due to the activation of growth factor receptors that activate Ras exchange factors, such as the epidermal growth factor receptors EGFR (ErbB1) and ErbB2 (HER2/neu) and the colony stimulating factor-1 (CSF-1) receptor c-fms [
5,
6]. EGFR and ErbB2 receptor over-expression occurs in one quarter to one-half of all breast tumors, and this correlates with a significantly decreased disease-free and overall survival rates [
5,
7]. In addition, ligands for the EGFR such as transforming growth factor-a, amphiregulin, epiregulin, betacellulin, and heparin-binding EGF stimulate the receptor in primary breast tumors to enhance local growth and progression of the disease [
8]. Finally, activating mutations in the PI3K pathway, an immediate downstream effector of Ras, occur in a subset of breast tumors [
9,
10]. Taken together, these findings suggest that breast cancer is a relevant model in which to study the biology of downstream Ras signal transduction.
The Ras oncogene binds numerous effectors that in turn activate a variety of signaling pathways. The most highly characterized of these are the Raf proteins, PI3K, and the Ral guanidine nucleotide exchange factors (RalGEFs), although Ras does recruit and activate other potentially transforming effectors [
11]. The dissection of individual Ras signaling pathways is possible using effector domain mutants (EDMs) of Ras, for which single amino acid mutations in the effector binding domain allow the binding and activation of specific effectors, but not others [
12]. These Ras EDMs, together with activated or dominant-negative versions of downstream effectors, have been used to characterize the pathways that contribute to the transformation of immortalized cells.
In mammary epithelial cells, both species- as well as cell line-dependent differences in Ras downstream signaling pathways have been found to induce tumorigenesis and/or anchorage-independent growth, a measure of
in vitro transformation. Studies using immortalized
mouse EpH4 mammary epithelial cells have implicated Raf as well as PI3K pathways in supporting transformation and tumorigenesis [
13]. For
human immortalized mammary epithelial cells, Raf and PI3K clearly contribute to transformation, although each is usually not sufficient for tumor formation in animal models [
14,
15]. In fact, the immortalized human breast epithelial cell line HMLE required simultaneous activation of Raf, PI3K, and the RalGEF pathways for maximal anchorage-independent growth and tumorigenic transformation [
14].
Dissecting the physiological consequences of individual Ras-mediated signaling pathways with respect to mammary epithelial transformation is of obvious interest. The ability of activated Ras and Raf to induce autocrine expression of epidermal-like growth factors has been implicated in the protection of MCF10A mammary epithelial cells from anoikis [
16]. Using HMEC16C cells, a telomerase-immortalized human mammary epithelial cell line, we have investigated the contribution of EGFR signaling to anchorage-independent growth initiated by Raf and additional signaling pathways downstream of Ras. We determined that ERK but not PI3K or RalGEF activation of HMEC16C cells supports anchorage independent proliferation independent of EGFR activation.
We performed a functional analysis of one gene in particular, TDAG51, whose expression is regulated by ERK through EGFR dependent and independent mechanisms. The loss of TDAG51 mRNA and protein has been correlated with breast adenocarcinoma and melanoma progression in clinical samples [
17,
18]. The importance of TDAG51 regulation on the transformed phenotype of Ras-infected cells was addressed using TDAG51-specific interfering small hairpin RNA (shRNA) to reduce TDAG51 levels. Consistent with a tumor suppressor role, loss of TDAG51 increased ERK-mediated cellular proliferation.
Methods
Culture of human epithelial cell lines
HME16C human mammary cells [
19] were cultured in Clonetics Mammary Epithelial Basal Media (MEBM) with MEGM SingleQuot supplements (Cambrex), and HEK-HT human embryonic kidney epithelial cells [
20] in DMEM (Invitrogen) plus 10% fetal bovine serum (Invitrogen). All cells were maintained at 37°C and 5% CO
2. For induction of proteins from the tetracycline-inducible retroviral expression vector pLRT, 250 ng/mL of doxycycline (Sigma-Aldrich) was added to culture media.
Retroviral and lentiviral constructs and infections
Constructs for the inducible expression of H-Ras, H-Ras effector domain mutants, and Rlf-CAAX were created by PCR subcloning the sequences of HA-tagged H-RasG12V (Ras
V12), H-RasG12V, E37G (Ras
V12G37), H-RasG12V, T35S (Ras
V12S35), H-RasG12V, Y40C (Ras
V12C40), and Rlf-CAAX [
21] into the tetracycline-inducible retroviral expression vector pLRT [
22]. The generation of retroviruses and lentiviruses was as described [
23]. Polyclonal populations of pLRT infected cells were selected with 5 μg/mL blasticidin. The expression of the anti-TDAG51 shRNA 36-1 was accomplished by sub-cloning the anti-TDAG51 shRNA sequence 5'-GGAACTGCACTTCTCCAACTTCAAGAGAGTTGGAGAAGTGCAGTTCCTTTTT-3' into the pLVTHM lentivirus (kindly provided by Dr. D. Trono, Lausanne, Switzerland; [
24]). After infection, cells with integrated lentivirus were selected by sterile sorting for GFP. Three sterile sorts were performed to acquire a polyclonal population of cells exclusively expressing GFP that was subsequently examined for TDAG51 protein reduction by western blotting.
Western blotting and Ral activation assays
Western blots were performed using Chemilluminescence (Pierce). Antibodies used for western blots included anti-Ras mAb (BD Biosciences, cat#R02120), rat anti-HA mAb (Roche, cat#1988506), anti-phospho Erk mAb (Santa Cruz, cat#sc-7383), goat anti- Erk2 (Santa Cruz, C14-G, cat#154-G), rabbit anti-phospho-Akt Ser473 (Cell Signaling Technology), goat anti-Akt (Santa Cruz, C-20, cat#sc-1618), or an anti-alpha tubulin mAb (clone DM1A, NeoMarkers), followed by detection using appropriate anti-mouse, rabbit, or goat HRP-conjugated secondary antibodies (Jackson Labs) and ECL detection. For Ral activation assays, the Ral Activation Assay Kit (Upstate Cell Signaling Solutions) was used according to the manufacturer's protocol.
Soft agar assays
Cells were trypsinized, neutralized, and 1.2 × 104 cells were plated per well in 0.36% bacto-agar (BD Biosciences), w/v in growth media, on a 0.6% bacto-agar support in 6-well culture plates. Prior to cell plating, 250 ng/mL doxycycline, DMSO vehicle, or the anti-EGFR compound PD153035 (Calbiochem), was added to the agar, as appropriate. Appropriately-supplememented fresh media was added to wells every 4 days. Colonies greater than 100 μm in diameter were counted after 18 days using a 2× lens equipped with a graded grid to determine colony size.
Alamar Blue growth assays in ultra-low attachment tissue culture plates
Cells were trypsinized and plated in 500 μL appropriate growth media into 24-well ultra-low attachment plates (Corning) at 25,000 cells per well. At the times indicated, 50 μL of alamar blue (BioSource International) was added to each well and incubated for 6 hours under standard culture conditions. The amount of alamar blue reduction was quantified by measuring the fluorescence of each sample at 530 nm excitation/590 nm emission, corrected for the background fluorescence in wells containing media but no cells. The number of cells for initial plating and the alamar blue incubation times were determined by generating a standard curve of fluorescence versus cell number incubated with alamar blue for various times. Plating cells initially at 25,000/well insures that fluorescence measurements will occur on a linear part of the curve with a 6-hour incubation time over the course of an experiment. It was determined that TDAG51-specific shRNA did not affect the redox potential of HME16C at various cell numbers. Statistical analysis was performed using 2-way analysis of variance (ANOVA) with Bonferroni post-tests using the GraphPad Prism software program (GraphPad Software, Inc.).
Tumorigenicity assays
Tumorigenicity assays were done essentially as described [
23]. To induce gene expression, cells were treated with 250 ng/mL doxycycline three days prior to injection, and mice were fed with doxycycline-containing diet (200 mg/kg, BioServ, Inc.) beginning four days prior to cell inoculation and continuing for the duration of the experiment.
Microarray analysis
Total RNA was extracted using Trizol reagent (Invitrogen) after treatment of cells with 250 ng/mL doxycycline for 72 hours to induce gene expression, or with doxycycline and 0.25 μM EGFR receptor kinase inhibitor PD153035 as indicated. Twenty micrograms of RNA were used for cDNA generation, and cDNA labeled with Cy3 or Cy5 monofunctional reactive dye to amino allyl-modified dUTP incorporated into cDNA using the FairPlay Microarray labeling kit (Stratagene). Labeled cDNA was hybridized to long-oligo (70-mer) cDNA microarrays from the NCI/CCR Microarray Center, NCI, Frederick, MD, according to standard protocols [
25]. Hybridized arrays were analyzed using a GenePix 4000B array scanner and GenePix Pro 4.0 software (Axon Instruments, Molecular Devices Corporation). Data from GenePix Pro 4.0 was uploaded to the microarray database at the NCI/CCR Microarray Center website [
25] for further analysis. Signal intensities of microarray features were calculated by subtracting the median local background from the median signal intensity. Features were considered for analysis if the signal intensity was greater than one standard deviation above background with at least a 2:1 signal-to-background ratio. Signal intensities for an entire microarray were normalized to the 50% percentile median value. After filtering and normalization, the Cy3 and Cy5 values were expressed as a ratio to indicate the fold up- or down-regulation. Two independent experiments for each comparison were performed, with a dye switch for each experiment, therefore yielding four separate data sets. For determining gene expression changes greater than or less than 2-fold, data sets were filtered for genes containing at least two significant values out of four array sets. Prior to filtering, all data points were analyzed using statistical analysis of microarray (SAM) data and a resultant gene set was chosen at a delta value of 0.4 that limited the false discovery rate (number of predicted false positive values/number of significant genes) for each analysis to less than 1%. Minimal information about a microarray experiment (MIAME)-compliant microarray data has been deposited with the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus, accession number GSE8916, available at [
26].
Real-time RT-PCR analysis
cDNA was synthesized from RNA obtained for microarray analysis using the SuperScript™ III First-Strand Synthesis System for RT-PCR (Invitrogen). Quantification of relative cDNA levels for each gene was accomplished using the Platinum
® SYBR
® Green qPCR Supermix UDG real-time RT-PCR kit (Invitrogen) and a Rotor-Gene3000™ thermocycler with Rotor-Gene 5.0.37 software (Corbett Research) that calculates relative PCR synthesis rates by comparative quantification. The specificity of product synthesis was verified by melting curve analysis by the Rotor-Gene 5.0.37 software, and by running of real-time PCR products on 2% agarose gels to verify product size and rule out primer-dimer contribution to calculated values. The sequence-specific primers used in real-time RT-PCR can be found in Additional file
2.
Cell cycle analysis
Cells grown under anchorage-independent conditions were spun down, washed once in sterile PBS, and suspended in a 50% mixture of PBS and ACCUMAX cell detachment solution (Chemicon International) for 10 minutes at 25°C to dissociate cell clumps. After dissociation, cells were washed once in cold PBS and then fixed with 70% ethanol. Fixed cells were treated with RNAse A for 20 minutes at 37°C, and nuclear DNA was stained with 50 μg/mL propidium iodide at 4°C. Cell cycle profiles were generated using a FACSCalibur flow cytometer (BD Biosciences) and modeling cell cycle phases with the cell cycle option of FlowJo flow cytometry software (Tree Star, Inc.) after gating for viable, single cells. Statistical analysis was performed using 2-way ANOVA with Bonferroni post tests using the GraphPad Prism software program (GraphPad Software, Inc.).
EdU cell proliferation assay
Measurement of cell proliferation by 5-ethynyl-2'-deoxyuridine (EdU) incorporation was measured using the Click-iT EdU cell proliferation Assay Kit for Flow Cytometry (Invitrogen) according to the manufacturer's protocol. Briefly, cells were plated at 1 × 106 cells per well in 6-well ultra-low attachment plates or 5 × 105 cells per dish in 60 mm tissue culture dishes for attached control cells. Attached cells were treated with either DMSO or 10 μM EdU for 4 hours, and cells grown in low attachment plates were treated with DMSO or 10 μM EdU for 24 hours. Using FlowJo flow cytometry software (Tree Star, Inc.), DMSO-treated control cells were used to determine the threshold above which cells could be considered EdU positive, and the fraction of cells incorporating EdU was then determined for experimental samples.
Cytotoxicity assay
The release of lactose dehydrogenase (LDH) into cell culture supernatant was measured using the cytotoxicity detection kit LDH (Roche Molecular Biochemicals) according to the manufacturer's instructions.
Discussion
Ras is a common signaling node for various cell surface receptors that contribute to epithelial cell transformation [
14]. In this study, we used the hTERT-immortalized human mammary epithelial cell line HME16C to examine which Ras signaling pathways are sufficient for transformation and to identify transcriptional targets downstream of those pathways that might modulate this phenotype. Transduction of HME16C with pathway-discriminating Ras effector domain mutants demonstrated that multiple downstream Ras signal transduction pathways contribute to anchorage-independent growth including Raf-, RalGEF-, and PI3K-mediated signaling. Transformation of HME16C by the Ras
V12G37 effector domain mutant but not activated Rlf-CAAX suggest that Ras
V12G37-binding effectors other than RalGEF contribute to mammary epithelial transformation.
Microarray analyses of Ras
V12 and Ras effector domain mutant transduced cells demonstrated a common upregulation of EGFR ligands among transformed cell lines. This suggested that autocrine EGFR ligand secretion was an important component of Ras-mediated cellular transformation. Following blockade of EGFR signaling with the EGFR-specific inhibitor PD153035, the only pathway downstream of Ras that promoted anchorage-independent growth was Raf/ERK, suggesting that Raf activation was able to substitute for EGFR activity in this cell line. In contrast, previous studies with MCF10A cells demonstrated that EGFR tyrosine kinase activity was necessary to inhibit anoikis upon matrix detachment, even in cells expressing activated Raf [
16]. By contrast, under matrix detached conditions, the parental HME16C cells are non-proliferative, but do not actively undergo anoikis. The studies here measure a proliferative response of Raf/ERK activation in the absence of a strong apoptotic component. In addition, blockade of MEK activity with the MEK-specific inhibitor PD98059 prevented the transformation of Ras
V12- and Ras
V12S35-expressing cells. This, taken together with the finding that Ras
V12- and Ras
V12S35-transduced HME16C cells were able to form tumors in nude mice, indicates that the Raf-MEK-Erk axis plays a crucial role in mediating transformation and tumorigenesis in this model. However, it should be noted that Ras-transformed HME16C, as well as the similar HMLER [
32], give rise to squamous metaplasias and not adenocarcinomas. It has been hypothesized that HMLE human mammary epithelial cells represent a distinct precursor population from those mammary epithelial cells that give rise to glandular adenocarcinomas, the predominant form of breast cancer [
32].
The significantly reduced tumorigenicity of RasV12S35- as compared to RasV12- expressing cells emphasizes the importance of cooperation between Ras signal transduction pathways for a fully transformed phenotype. Following EGFR inhibition, RasV12C40- and RasV12G37- transduced lines lost anchorage-independent growth, suggesting that non-ERK signaling pathways contribute to cellular transformation through an EGFR dependent mechanism. Indeed, one consequence of EGFR activation is ERK pathway activation and may explain the role of EGFR in cooperating with RasV12G37- and RasV12C40-mediated cell signaling to promote anchorage-independent growth.
Microarray analyses identified up-regulation of the PHLDA1 gene product as being correlated with ERK-mediated cellular transformation. Likewise, the protein product of the PHLDA1 gene, TDAG51, displayed an identical expression pattern. Expression of PHLDA1 mRNA and TDAG51 protein in breast cancer has recently been described [
17]. Using TDAG51 immunohistochemistry of tissue microarrays, 699 individual primary invasive breast tumor specimens were examined; loss of TDAG51 was found to correlate with a poorer disease-free and overall survival rate in multivariate analysis. Similar results have been found in a small series of melanomas, where TDAG51 immunoreactivity was found to decrease during the progression of melanocytic nevi to primary melanomas and finally to metastatic melanoma [
18]. These studies suggest that TDAG51 has a suppressive effect on tumor progression and prompted us to evaluate the cell biological function of TDAG51 in the HME16C transformation model.
The PHLDA1 gene is a member of the pleckstrin homology-related domain family that includes Ipl/Tssc and Tih [
33]. PHDLA1 has been described as an immediate early gene with transcriptional activation resulting from engagement of receptors such as the FGF and IGF tyrosine kinase receptors and the T-cell receptor [
34‐
36]. Strong TDAG51 induction by Ras
V12S35 transformation of mammary epithelial cells suggests that ERK activation may at least partially explain TDAG induction in these previous reports.
In vitro studies have suggested a role for TDAG51 in the control of cellular proliferation and in the induction of apoptosis in response to a variety of stresses including proteotoxic cellular stresses such as lung cancer cell responses to chemotherapy[
35,
37‐
39].
Overexpression of TDAG51 has been shown to reduce cell proliferation and induce cell death in a variety of cell types including T cells, neuronal, endothelial, melanoma, and cervical carcinoma cell types [
34,
35,
38]. By contrast, TDAG51 functioned as an anti-apoptotic factor downstream of insulin-like growth factor receptor (IGFR) signaling as TDAG51 was required to protect NIH3T3 cells from apoptosis upon IGF-1 withdrawal [
36].
Reduction of TDAG51 levels in RasV12 and RasV12S35 cells enhanced cell proliferation under anchorage-independent conditions. This suggests that TDAG51 expression limits cellular proliferation. In addition to enhancing cellular proliferation, reduction of TDAG51 protein levels also increased the absolute amount of cell death in transformed RasV12S35 cells under these same conditions. Therefore, TDAG51 loss, in the context of oncogene activation, may indirectly promote cell death as a consequence of enhanced cell cycling. However, the overall increased cell numbers in anchorage-independent conditions showed that enhanced cellular proliferation exceeded enhanced cell death.
Interestingly, a decrease in TDAG51 expression during Ras-mediated cellular transformation promoted the growth of cells under anchorage-independent conditions but did not affect the growth of attached cells. This suggests that TDAG51 might act in conjunction with both cellular stress, in this case matrix detachment, and a proliferative signal, in this case oncogenic activation. Other studies also have implicated TDAG51 in functioning during cellular stress and survival, particularly endoplasmic reticulum stress associated with the unfolded protein response [
37,
38]. A mechanism of action for TDAG51 is not known. The preliminary finding that TDAG51 binds to proteins involved in protein translation has been used to suggest that TDAG51 may play a role in regulating protein synthesis in response to proteotoxic stress [
40].
Reduction of TDAG51 expression resulted in an increase in Erk activation in cells grown under anchorage-independent conditions. How TDAG51 expression might suppress ERK signaling is not known, but appears to represent a negative feedback pathway that directly or indirectly limits ERK activation. This is not likely to be due to an inhibition of ERK protein synthesis by TDAG51, since Erk2 levels were unaffected by reduced TDAG51. However, another important component of ERK activation is the dual specific ERK phosphatases, a highly regulated class of proteins, whose relative level of activity may be affected by TDAG51 protein levels. Understanding the mechanisms by which TDAG51 regulates ERK pathway activation and the balance between cellular proliferation and apoptosis of transformed cells represents a future challenge. Finally, TDAG51 acts in a suppressive manner during matrix-detached growth of HME16C cells. Taken together with the identification of TDAG51 as a stress-induced gene in a variety of cell lines and a growth inhibitor in melanoma cell lines, it is reasonable to suggest that loss of TDAG51 may act to promote progression of breast cancer through an intrinsic growth regulatory mechanism.
Competing interests
The authors declare that they have no competing interests. The final text was reviewed and approved by all the listed co-authors. They all contributed to the intellectual content and to the experimental work in an honest manner. The contents have not been published by or submitted to any other journal. No part of this text has been included in any other paper.
Authors' contributions
Conception and design: MDO and KK. Provision of study materials: MDO, JJY, YW, and KK. Collection and assembly of data: MDO, SJB, and LZ. Data analysis and interpretation: MDO and KK. Manuscript writing: MDO and KK. Final approval of manuscript: MDO, SJB, LZ, JJY, YW, and KK.