Although molecular subgroups of ependymoma arising in different anatomical sites exhibit histopathological similarities, their molecular profiles are easily discernable, owing to diverse genetic, transcriptional, and epigenetic programs [
7,
8,
18,
22,
24,
30,
36,
37]. Functional cross-species analyses have provided evidence that these molecular differences may be reflective of discrete developmental and cellular origins [
16,
30,
33]. Based on demographic, clinical, and molecular data, supported in multiple independent cohorts [
23,
29‐
31,
36,
37], a full consensus was reached that: posterior fossa and supratentorial ependymoma are biologically different diseases both treated by surgery and radiotherapy. Future molecular characterization and clinical trials will assess whether posterior fossa and supratentorial ependymoma may benefit from different forms of therapy. A recent international collaborative study identified nine molecular subgroups of ependymal tumors, three in each anatomical compartment of the central nervous system, spine (SP), posterior fossa (PF), and supratentorial region (ST) [
29]. One of the subgroups within each compartment was enriched with WHO Grade I subependymomas (SE), named ST-SE, PF-SE, and SP-SE. These molecular subependymomas occurred in adults only. The two other molecular subgroups within the spine predominantly matched the histopathology-based diagnoses of myxopapillary ependymoma (SP-MPE) and (WHO Grade II/III) ependymoma (SP-EPN). The remaining two molecular types of ependymoma occurred in the posterior fossa, termed PF-EPN-A and PF-EPN-B or alternatively posterior fossa Group A and B, and were independently identified in retrospective studies [
36,
37]. PF-EPN-A tumors occur predominantly in infants and young children. Due to their predominant lateral localization, PF-EPN-A tumors are often difficult to completely resect and are associated with high recurrence rates [
37]. Conversely, PF-EPN-B tumors occur largely in adolescents and young adults and are associated with a more favorable prognosis. More than 70% of supratentorial ependymomas are characterized by fusions between
C11ORF95 and the
RELA gene, and were recently termed ST-EPN-RELA [
29,
30]. While ST-EPN-RELA tumors may occur in both children and adults, the remaining molecular subgroup of supratentorial ependymoma harbors recurrent fusions to the oncogene
YAP1 and is enriched in the pediatric population [
29,
30]. Since preliminary evidence of a small retrospective cohort indicates that patients with YAP1 fusions have an excellent prognosis, it was agreed upon that the international community should move rapidly toward determining whether ST-EPN-YAP1 is a subgroup with an extremely favorable clinical outcome and therefore might benefit from careful therapy de-escalation within the setting of a clinical trial. Retrospective classification of clinically well-annotated supratentorial ependymomas, which have been treated in clinical trials, is expected to give more detailed information on outcome within this subgroup in the near future. No consensus was made upon morphologically diagnosed ST-ependymomas without RELA/YAP1 fusion. It was felt that further investigation was needed for this apparently heterogeneous group of tumors. It was acknowledged that such issues could be addressed with a DNA methylation-based molecular classification for ependymal tumors that represents an unbiased, robust, and uniform scheme that adequately reflects the full biological, clinical, and histopathological heterogeneity across all age groups, grades, and major anatomical CNS compartments. The clinical feasibility of this platform is supported by multiple components: (1) low sample input and DNA requirements, (2) robust results from formalin-fixed paraffin-embedded (FFPE) tissue, and (3) minimal batch effects and assay consistency between different clinical-genomic facilities. In addition to DNA methylation patterns, DNA copy number profiles can be derived from this analysis. It is important to note that chromosome 1q gain has been shown to be an independent prognostic factor that occurs in a subset of PF-EPN-A, PF-EPN-B, and ST-EPN-RELA tumors [
12,
17,
24,
29,
32,
37]. Future integrated molecular efforts will explore the integration of molecular subgroup, copy number alterations (namely chromosome 1q gain), and their impact on patient outcome.
Molecular sub-classification is expected to significantly support treatment decisions and simplify risk stratification processes in the immediate future, and should impact clinical trial design and operation in both children and adults. A complete consensus was reached that molecular subgrouping should be a part of all clinical trials moving forward. It was agreed that certification of diagnostic assays for molecular subgroup detection is of high importance. However, it was acknowledged that there were differences between countries regarding certifying agencies and regulations, and therefore most attendees felt that it was not reasonable and feasible to generate a consensus statement on certification processes. To further improve molecular diagnostics and identify new prognostic factors and therapeutic targets, optimal tissue material for ongoing and future biologic discovery studies is required. The great majority of attendees agreed that submitting fresh-frozen samples should be mandatory within upcoming clinical trials for ependymoma. Although DNA methylation profiling can be performed with FFPE-derived tissue, frozen samples would provide optimal material for use in future applications, such as genome sequencing. The interpretation of any tumor sequencing (from a limited gene panel up to whole genome) would dramatically benefit from a matched control to correct for aberrations inherent to the germline. As such, an agreement among most attendees was established that submission of blood samples should also be mandatory for enrollment in a clinical trial. It should be recognized that arguments were made against the mandate of fresh-frozen tissue, owing to the logistical issues of collection, storage, and submission, particularly in small community centers. Additionally, there were ethical concerns regarding the mandated submission of blood. Attendees recognized that efforts would need to be established to create standard operating procedures in smaller centers to enable reliable collection and submission of frozen tissue. Many of those agreeing on a mandate of frozen tissue and blood argued that given the rapid developments in the field of molecular genetics, with the emergence of increasingly powerful analytical devices and computational tools, the time is now to collect tissue specimens in combination with high-quality clinical data. This would enable the use of such advances to improve the care of future ependymoma patients.