Introduction
Methods
Study design and subjects
Blood and serum samples
Estimation of biochemical and hormonal parameters
Genotyping of rs1137101 polymorphism in leptin receptor gene by DNA sequencing
Statistical analysis
Results
PCOS patient | Control | OR | CI | χ2 | P-value | |
---|---|---|---|---|---|---|
Genotype frequency | ||||||
AA | 85 (76.16) | 82 (71.66) | Ref. | |||
AG | 29 (46.69) | 23 (43.68) | 1.21 | 0.65–2.27 | 0.38 | 0.539 |
GG | 16 (7.16) | 17 (6.66) | 0.90 | 0.43–1.91 | 0.06 | 0.799 |
AG + GG | 45 (34.6) | 40 (32.7) | 1.08 | 0.64–1.83 | 0.09 | 0.758 |
Allele frequency | ||||||
A | 199 (76.5) | 187 (76.6) | Ref. | |||
G | 61 (23.4) | 57 (23.3) | 1.00 | 0.66–1.51 | 0.00 | 0.976 |
Genotype/allele | Control (N) | Control (O) | OR | CI | χ2 | P-value |
AA | 42 (37.28) | 40 (31.66) | Ref. | |||
AG | 13 (18.44) | 10 (24.68) | 0.76 | 0. 30-1.95 | 0.30 | 0.581 |
GG | 5 (2.28) | 12 (4.66) | 2.40 | 0.77–7.44 | 2.39 | 0.122 |
AG + GG | 18 (31.0) | 22 (35.4) | 1.22 | 0.57–2.61 | 0.27 | 0.605 |
A | 93 (80.1) | 90 (72.5) | Ref. | |||
G | 23 (19.8) | 34 (27.4) | 1.52 | 0.83–2.79 | 1.91 | 0.167 |
Genotype/allele | Patient (N) | Patient (O) | OR | CI | χ2 | P-value |
AA | 42 (38.40) | 43 (37.89) | Ref. | |||
AG | 12 (19.20) | 17 (24.22) | 1.38 | 0.59–3.24 | 0.56 | 0.454 |
GG | 6 (2.40) | 10 (4.89) | 1.62 | 0.54–4.88 | 0.77 | 0.381 |
AG + GG | 18 (30) | 27 (38.5) | 1.46 | 0.70–3.04 | 1.05 | 0.305 |
A | 96 (80) | 60 (42.8) | Ref. | |||
G | 24 (20) | 27 (19.2) | 1.43 | 0.80–2.57 | 1.49 | 0.222 |
Genotype/allele | Control (N) | Patient (N) | OR | CI | χ2 | P-value |
AA | 42 (39.20) | 42 (38.40) | Ref. | |||
AG | 13 (18.59) | 12 (19.20) | 0.92 | 0. 37-2.25 | 0.03 | 0.860 |
GG | 2 (2.20) | 6 (2.40) | 1.20 | 0. 34-4.23 | 0.08 | 0.776 |
AG + GG | 15 (25.8) | 18 (29.0) | 1.00 | 0.45–2.18 | 0.00 | 1.000 |
A | 97 (83.6) | 96 (80.0) | Ref. | |||
G | 15 (12.9) | 24 (20.0) | 1.05 | 0.55–1.99 | 0.03 | 0.870 |
Genotype/allele | Control (O) | Patient (O) | OR | CI | χ2 | P-value |
AA | 40 (32.66) | 43 (37.86) | Ref. | |||
AG | 10 (24.68) | 17 (27.22) | 1.58 | 0.64–3.85 | 1.02 | 0.311 |
GG | 12 (4.66) | 10 (4.89) | 0.77 | 0. 30-1.99 | 0.28 | 0.596 |
AG + GG | 22 (35.4) | 27 (38.5) | 1.14 | 0.56–2.31 | 0.13 | 0.714 |
A | 90 (72.5) | 103 (73.5) | Ref. | |||
G | 34 (27.4) | 27 (19.2) | 0.95 | 0.55–1.64 | 0.03 | 0.856 |
Parameter | Group | rs1137101 genotypes Mean ± SEM | P-value | |||
---|---|---|---|---|---|---|
AA | AG | GG | ||||
BMI (kg/m2) | PCOS | 30.0 ± 0.75 | 31.0 ± 1.37 | 32.5 ± 1.99 | AA vs. AG | 0.491 |
AA vs. GG | 0.162 | |||||
GG vs. AG | 0.543 | |||||
Control | 26.0 ± 0.72 | 29.4 ± 0.18 | 33.6 ± 2.07 | AA vs. AG | 0.018 | |
AA vs. GG | 0.000 | |||||
GG vs. AG | 0.181 | |||||
W/H ratio | PCOS | 0.84 ± 0.01 | 0.87 ± 0.01 | 0.91 ± 0.029 | AA vs. AG | 0.064 |
AA vs. GG | 0.009 | |||||
GG vs. AG | 0.05 | |||||
Control | 0.75 ± 0.01 | 0.76 ± 0.17 | 0.78 ± 0.016 | AA vs. AG | 0.040 | |
AA vs. GG | 0.119 | |||||
GG vs. AG | 0.252 | |||||
Cholesterol (mmol/L) | PCOS | 4.5 ± 0.11 | 4.35 ± 0.22 | 4.5 ± 023 | AA vs. AG | 0.530 |
AA vs. GG | 1.00 | |||||
GG vs. AG | 0.676 | |||||
Control | 3.57 ± 0.06 | 3.79 ± 0.11 | 3.72 ± 0.121 | AA vs. AG | 0.180 | |
AA vs. GG | 0.313 | |||||
GG vs. AG | 0.718 | |||||
Triglyceride (mmol/L) | PCOS | 1.05 ± 0.05 | 1.34 ± 0.08 | 1.2 ± 0.14 | AA vs. AG | 0.003 |
AA vs. GG | 0.147 | |||||
GG vs. AG | 0.464 | |||||
Control | 0.83 ± 0.04 | 0.92 ± 0.09 | 0.96 ± 0.09 | AA vs. AG | 0.001 | |
AA vs. GG | 0.209 | |||||
GG vs. AG | 0.764 | |||||
HDL (mmol/L) | PCOS | 1.12 ± 0.35 | 0.98 ± 0.03 | 1.07 ± 0.08 | AA vs. AG | 0.040 |
AA vs. GG | 0.613 | |||||
GG vs. AG | 0.248 | |||||
Control | 1.29 ± 0.03 | 1.30 ± 0.07 | 1.12 ± 0.06 | AA vs. AG | 0.080 | |
AA vs. GG | 0.061 | |||||
GG vs. AG | 0.248 | |||||
LDL (mmol/L) | PCOS | 2.55 ± 0.09 | 2.56 ± 0.15 | 2.63 ± 0.16 | AA vs. AG | 0.978 |
AA vs. GG | 0.678 | |||||
GG vs. AG | 0.771 | |||||
Control | 1.69 ± 0.07 | 1.81 ± 0.15 | 1.68 ± 0.13 | AA vs. AG | 0.101 | |
AA vs. GG | 0.989 | |||||
GG vs. AG | 0.570 | |||||
Leptin | PCOS | 28.2 ± 1.67 | 29.8 ± 3.29 | 38.4 ± 5.93 | AA vs. AG | 0.634 |
AA vs. GG | 0.027 | |||||
GG vs. AG | 0.179 | |||||
Control | 22.2 ± 1.78 | 29.3 ± 5.0 | 40.0 ± 6.48 | AA vs. AG | 0.060 | |
AA vs. GG | 0.000 | |||||
GG vs. AG | 0.194 | |||||
Ghrelin | PCOS | 0.39 ± 0.02 | 0.38 ± 0.16 | 0.32 ± 0.13 | AA vs. AG | 0.622 |
AA vs. GG | 0.053 | |||||
GG vs. AG | 0.239 | |||||
Control | 0.49 ± 0.01 | 0.39 ± 0.03 | 0.30 ± 0.02 | AA vs. AG | 0.005 | |
AA vs. GG | 0.000 | |||||
GG vs. AG | 0.042 | |||||
Insulin (pmol/L) | PCOS | 110.8 ± 7.7 | 107.4 ± 10.77 | 92.60 ± 14.06 | AA vs. AG | 0.794 |
AA vs. GG | 0.270 | |||||
GG vs. AG | 0.412 | |||||
Control | 66.7 ± 4.03 | 80.8 ± 7.33 | 95.4 ± 10.5 | AA vs. AG | 0.110 | |
AA vs. GG | 0.005 | |||||
GG vs. AG | 0.247 | |||||
Fasting glucose | PCOS | 5.09 ± 0.06 | 5.07 ± 0.08 | 5.04 ± 0.143 | AA vs. AG | 0.828 |
AA vs. GG | 0.723 | |||||
GG vs. AG | 0.874 | |||||
Control | 4.66 ± 0.05 | 4.63 ± 0.12 | 5.06 ± 0.12 | AA vs. AG | 0.522 | |
AA vs. GG | 0.002 | |||||
GG vs. AG | 0.012 | |||||
HOMA-IR | PCOS | 3.61 ± 1.74 | 3.51 ± 1.85 | 3.04 ± 0.489 | AA vs. AG | 0.788 |
AA vs. GG | 0.274 | |||||
GG vs. AG | 0.448 | |||||
Control | 2.04 ± 0.13 | 2.44 ± 0.24 | 3.16 ± 0.37 | AA vs. AG | 0.139 | |
AA vs. GG | 0.002 | |||||
GG vs. AG | 0.110 |
Parameter | Group | SNP rs 1137101 Mean ± S.D. | Cohen’s d effect size | Gates’ delta | Hedges’ g | interaction r | ||||
---|---|---|---|---|---|---|---|---|---|---|
BMI |
AA
|
AG
|
GG
|
d
|
% of non overlap
| N. | ||||
PCOS | 30.0 ± 8.55 | 31.0 ± 15.62 | 32.5 ± 22.69 | 0.484528 0.1437 0.048298 | 31.68% small 11.06% small 3.72% small | 0.503145 0.80402 0.048119 | 0.483966 0.141525 0.048304 | 0.235 0.072 0.024 | AA AG GG | |
control | 26.0 ± 7.95 | 29.4 ± 1.99 | 33.6 ± 22.86 | |||||||
W/H ratio | PCOS | 0.84 ± 0.114 | 0.87 ± 0.114 | 0.91 ± 0.33 | 0.803443 0.082545 0.491572 | 47.60% large 6.35% small 32.44% small | 0.818182 0.058511 0.738636 | 0.802985 0.083939 0.487248 | 0.372 0.041 0.239 | AA AG GG |
control | 0.75 ± 0.110 | 0.76 ± 1.88 | 0.78 ± 0.176 | |||||||
Cholesterol | PCOS | 4.50 ± 0.114 | 4.35 ± 2.51 | 4.50 ± 2.62 | 1.963678 0.315219 0.374844 | 82.06% large 22.38% small 25.68% small | 1.409091 5.090909 0.58209 | 1.993963 0.310312 0.371382 | 0.712 0.155 0.184 | AA AG GG |
control | 3.57 ± 0.66 | 3.79 ± 0.110 | 3.72 ± 1.34 | |||||||
Triglycerides | PCOS | 1.05 ± 0.57 | 1.34 ± 0.91 | 1.20 ± 1.60 | 0.432079 0.441714 0.180392 | 29.59% small 30.26% small 13.26% small | 0.5 0.424242 0.242424 | 0.430339 0.442309 0.179118 | 0.212 0.216 0.090 | AA AG GG |
control | 0.83 ± 0.44 | 0.92 ± 0.99 | 0.96 ± 0.99 | |||||||
Chol-HDL | PCOS | 1.12 ± 3.86 | 0.98 ± 0.34 | 1.07 ± 0.91 | 0.062058 0.537644 0.062902 | 4.78% small 35.48% medium 4.84% small | 0.515152 0.415584 0.075758 | 0.061102 0.543535 0.062592 | 0.031 0.261 0.031 | AA AG GG |
control | 1.29 ± 0.33 | 1.30 ± 0.77 | 1.12 ± 0.66 | |||||||
Chol-LDL | PCOS | 2.55 ± 1.03 | 2.56 ± 1.71 | 2.63 ± 1.82 | 0.94574 0.446357 0.580451 | 54.18% large 30.57% small 36.96% medium | 1.116883 0.454545 0.664336 | 0.941487 0.446103 0.578266 | 0.460 0.219 0.278 | AA AG GG |
control | 1.69 ± 0.77 | 1.81 ± 1.65 | 1.68 ± 1.43 | |||||||
Leptin | PCOS | 28.2 ± 19.0 | 29.8 ± 37.52 | 38.4 ± 67.61 | 0.310027 0.01059 0.022983 | 22.01% small 0.84% small 1.77% small | 0.304569 0.009053 0.022356 | 0.310206 0.015693 0.023003 | 0.153 0.0053 0.011 | AA AG GG |
control | 22.2 ± 19.7 | 29.3 ± 55.23 | 40.0 ± 71.57 | |||||||
Ghrelin | PCOS | 0.39 ± 0.22 | 0.38 ± 1.82 | 0.32 ± 1.48 | 0.57496 0.007646 0.018903 | 36.69% medium 5.89% small 1.46% small | 0.909091 0.30303 0.090909 | 0.569518 0.007534 0.01862 | 0.275 0.0038 0.009 | AA AG GG |
control | 0.49 ± 0.110 | 0.39 ± 0.33 | 0.30 ± 0.22 | |||||||
Insulin | PCOS | 110.8 ± 87.8 | 107.4 ± 122.8 | 92.6 ± 160.3 | 0.633596 0.255755 0.020043 | 40.49% medium 18.80% small 1.54% small | 0.991011 0.328557 0.024247 | 0.627686 0.254158 0.019942 | 0.303 0.128 0.01 | AA AG GG |
control | 66.7 ± 44.5 | 80.8 ± 80.96 | 95.4 ± 115.98 | |||||||
Fasting glucose | PCOS | 5.09 ± 0.68 | 5.07 ± 0.91 | 5.04 ± 1.63 | 0.695314 0.388114 0.013485 | 42.71% medium 26.59% small 1.04% small | 0.781818 0.333333 0.015152 | 0.693 0.380341 0.01344 | 0.328 0.190 0.007 | AA AG GG |
control | 4.66 ± 0.55 | 4.63 ± 1.32 | 5.06 ± 1.32 | |||||||
HOMA-R | PCOS | 3.61 ± 19.8 | 3.51 ± 21.09 | 3.04 ± 5.57 | 0.111846 0.07119 0.024558 | 8.61% small 5.48% small 1.89% small | 1.097902 0.403774 0.02934 | 0.110116 0.070112 0.024441 | 0.056 0.036 0.012 | AA AG GG |
control | 2.04 ± 1.43 | 2.44 ± 2.65 | 3.16 ± 4.09 |