Background
Escherichia coli is the most frequently isolated microorganism in acute biliary tract infections [
1,
2], and the associated bacteremia is mainly caused by
E. coli [
3]. Biliary tract infections normally start with the stasis of bile flow, and once intestinal bacteria flow into the bile duct, an acute biliary infection can develop. The causative organisms in bile cultures of acute biliary infections were shown to be polymicrobial [
3,
4]. These pathogens were considered intestinal commensals of low virulence [
5].
E. coli can be differentiated depending on its pathogenicity as commensal, which are considered avirulent; intestinal pathogenic; extraintestinal pathogenic, such as uropathogenic, neonate meningitis groups and sepsis-associated groups; and as avian pathogenic [
6,
7].
Acute biliary infections, such as cholangitis and cholecystitis, can develop into a severe infection with bacteremia. In cases of severe infection, mortality can reach 10% [
8]. This begs the question, if the causative organisms are considered to be avirulent, why did the patients suffer severe disease and even death?
We hypothesized that the causative
E. coli were virulent, and this influenced the severity of acute biliary infection. Uropathogenic
E. coli strains, which cause urinary tract infections, have been extensively studied, and have shown to express several virulence factors, such as those involved in adhesion (
afaB/C,
fimH,
iha,
papC,
papG2, and
sfaD/E), toxicity (
cnf1,
hlyA,
sat, and
usp), iron acquisition (
fyuA,
ironN,
iucD and
iutA), capsule synthesis (
kpsMT2), and miscellaneous genes
(cvaC,
ibeA,
ompT,
tcpC, and
traT). These virulence factors play important roles at each step of infection [
9]. Studies on
E. coli strains from bacteremia in biliary tract infections are however limited. A previous study showed different prevalences of 10 virulence factors (
afa,
cnf1,
fimH,
foc,
hlyA,
iutA,
papG class I,
papG class II,
papG class III, and
sfa) in Biliary pathogenic
E. coli (BEC) strains compared in
E. coli strains from blood cultures of patients with acute urinary tract infections [
10]. BEC strains might exist and have unique traits as uropathogenic
E. coli strains have.
Pathogenic E. coli express many common virulence factors even at different sites of infection, but an organ-specific strategy is needed to identify specific virulence factors. These common and/or different traits are now studied rigorously to understand pathogenesis and to cope with infection at different foci.
Our study aimed to analyze the relationship between the severity of biliary tract infections and the prevalence of the virulence factors of BEC isolates.
Results
A total of 71 cases of bacteremic acute biliary tract infections (72 BEC isolates) were identified. In one of the patients, two E. coli isolates with different colony morphology were detected; we have included both isolates in the study.
The patients were grouped depending on their severity level, and the characteristics of the severe group (Pitt’s score ≥ 2) and the non-severe (score < 2) group were compared. Patient background, such as age, gender, and comorbidity were the same in the two groups, except for diabetes mellitus (DM) with organ involvement (Table
1). More than half of the patients in both groups presented abnormalities of the biliary tract and had experienced biliary tract infections in the past.
Table 1
Comparison of patient backgrounds and symptoms, and severity of bacteremia
Number of patients | 71 | 44 | 27 | |
Age (median, range) | 75 (31–94) | 72.9 (34–93) | 72 (31–94) | 0.38 |
Gender (male: female) | F28 M43 | F16 M28 | F12 M15 | 0.618 |
Nursing home | 4 | 2 | 2 | 0.632 |
Antibiotic use within 3 months | 29 | 19 | 10 | 0.479 |
Charlson index (median, range) | 4 (0–11) | 4 (0–11) | 3 (0–8) | 0.104 |
Collagen diseases | 4 | 4 | 0 | 0.29 |
Diabetes mellitus without organ involvement | 7 | 3 | 4 | 0.415 |
Diabetes mellitus with organ involvement | 20 | 17 | 3 | 0.015* |
Malignancy | 49 | 31 | 18 | 0.613 |
Abnormality of biliary tract | 43 | 29 (65.9%) | 14 (52%) | 0.318 |
Abnormality of gastrointestinal tract | 38 | 25 | 13 | 0.625 |
Previous history of acute biliary infection | 33 | 21 | 12 | 0.811 |
Previous history of bacteremia | 11 | 7 | 4 | 1 |
Duration between onset of symptoms and admission (days) | 0 (− 24 to 10) | 0 (− 24 to 4) | 0 (−10 to 10) | 0.924 |
Fever | 39 | 23 | 16 | 0.629 |
Immunosuppressant use | 27 | 19 | 8 | 0.318 |
Artificial device in biliary tract | 19 | 11 | 8 | 0.784 |
The laboratory data showed that the liver enzymes and biliary markers analyzed were elevated to the same degree in the two severe and non-severe groups, except for alkaline phosphatase (ALP), and the median white blood cell counts, which were higher in the non-severe group (Table
2).
Table 2
Comparison of laboratory data and severity of bacteremia
White blood cell counts (per μL) median (min–max) | 9800 (1200–25,600) | 10,500 (2400–25,600) | 8600 (1200–23,200) | 0.0492* |
Platelets (× 10,000/μL) | 16.1 (7.0–38.1) | 17.6 (7–38.1) | 15.2 (7.0–35.1) | 0.211 |
Albumin (g/dL) | 3.2 (1.0–4.5) | 3.15 (1.0–4.5) | 3.5 (2.0–4.2) | 0.136 |
Total bilirubin (mg/dL) | 2.0 (0.4–11.6) | 2.0 (0.4–11.6) | 2.2 (0.5–7.0) | 0.148 |
AST (U/L) | 100 (16–1591) | 98 (16–1026) | 133 (17–1591) | 0.152 |
ALT (U/L) | 91 (11–724) | 77 (13–569) | 100 (11–724) | 0.4 |
g-GTP (U/L) | 328 (11–2118) | 346 (11–2118) | 288 (14–817) | 0.621 |
ALP (U/L) | 733 (143–3520) | 855 (143–3520) | 594(232–3278) | 0.026* |
CRP (mg/dL) | 3.76 (0.08–22.32) | 3.48 (0.08–18.53) | 5.0 (0.11–22.32) | 0.687 |
Next, we compared the phylogenetic groups, ST lineages, and virulence factors of BEC by the severity level (Table
3). The most detected phylogenetic group was B2 in both groups (70.5% in non-severe, 64.3% in severe), and the proportion of each phylogenetic group between the severe and non-severe groups was similar. BEC isolates mainly belonged to the B2 phylogenetic group (68.1%), and to ST131 (23.6%) and the ST95 (19.4%) lineages, as detected by multi-locus sequencing typing (MLST). The extended-spectrum-beta-lactamase (ESBL)-producing isolates were detected 12 isolates, including 7 of ST131 lineage, and others were one each of ST10, ST95, ST354, ST648, and ST1196 lineages, respectively. The proportions of STs and prevalence of the ESBL-producing isolates were not significantly different between the two groups.
Table 3
Comparison of patterns of phylogenetic groups and prevalence of virulence factors and severity of bacteremia
Phylogenetic group | 72 | 44 | 28 | 0.732 |
B2 | 49 (68.1%) | 31 (70.5%) | 18 (64.3%) | |
B1 | 8 (11.1%) | 3 (6.8%) | 5 (17.9%) | |
E | 6 (8.3%) | 4 (9.1%) | 2 (7.1%) | |
A | 4 (5.6%) | 2 (4.5%) | 2 (7.1%) | |
F | 4 (5.6%) | 3 (6.8%) | 1 (3.6%) | |
D | 1 (1.4%) | 1 (2.2%) | 0 | |
ST | | | | 0.165 |
ST131 | 17 (23.6%) | 13 (29.5%) | 4 (14.3%) | |
ST95 | 14 (19.4%) | 8 (18.2%) | 6 (21.4%) | |
ST73 | 5 (6.9%) | 4 (9.1%) | 1 (3.6%) | |
ST127 | 2 (2.8%) | 2 (4.5%) | 0 | |
ST405 | 2 (2.8%) | 2 (4.5%) | 0 | |
ST357 | 2 (2.8%) | 0 | 2 (7.1%) | |
ST453 | 2 (2.8%) | 1 (2.2%) | 1 (3.6%) | |
ST1196 | 2 (2.8%) | 1 (2.2%) | 1 (3.6%) | |
ST10 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST117 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST126 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST144 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST345 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST354 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST420 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST429 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST457 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST607 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST648 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST683 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST1193 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST1304 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST1380 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST1415 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST1851 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST2074 | 1 (1.4%) | 1 (2.2%) | 0 | |
ST2732 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST3532 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST6998 | 1 (1.4%) | 0 | 1 (3.6%) | |
ST7344 | 1 (1.4%) | 0 | 1 (3.6%) | |
Un-typable | 4 (5.6%) | 1 (2.2%) | 3 (10.7%) | |
The presence of the
iutA gene (77.3% in the non-severe group, 46.4% in the severe group,
P = 0.011) and the
ibeA gene (9.1% in non-severe group, and 35.7% in severe group,
P = 0.012) were significantly associated with severity as determined by univariable analysis (Table
4)
, whereas patient characteristics were not significantly associated with severity.
Table 4
Comparison of prevalence of virulence factor-encoding genes and severity of bacteremia
Adhesion | | | | |
papC | 21 | 15 | 6 | 0.296 |
papG2 | 10 | 8 | 2 | 0.297 |
sfaD/E | 8 | 4 | 4 | 0.703 |
fimH | 69 | 42 | 27 | 1 |
afaB/C | 2 | 1 | 1 | 1 |
iha | 23 | 16 | 7 | 0.438 |
Toxin | | | | |
usp | 56 | 35 | 21 | 0.773 |
cnf1 | 9 | 5 | 4 | 0.728 |
hlyA | 9 | 5 | 4 | 0.728 |
sat | 22 | 16 | 6 | 0.202 |
Iron uptake | | | | |
fyuA | 52 | 35 | 17 | 0.108 |
iroN | 16 | 10 | 6 | 1 |
iucD | 24 | 18 | 6 | 0.124 |
iutA | 47 | 34 | 13 | 0.011* |
Capsule | | | | |
kpsMT2 | 51 | 33 | 18 | 0.427 |
Miscellaneous | | | | |
ibeA | 14 | 4 | 10 | 0.012* |
traT | 49 | 33 | 16 | 0.128 |
cvaC | 6 | 6 | 0 | 0.753 |
ompT | 6 | 6 | 0 | 0.075 |
TcpC | 12 | 9 | 3 | 0.346 |
The distribution of the
iutA and the
ibeA genes according to sequence types is shown in Table
5. Only one isolate (ST429) was both
iutA and
ibeA-positive. The ST131 (n = 17) and the ST73 (n = 5) isolates were all
iutA-positive. Among the
ibeA-positive isolates (n = 14), ST95 accounted for 35.7%.
Table 5
Distribution of the iutA and the ibeA genes according to sequence types
ST131 | 17 | 0 | 17 (100%) | 0 | 0 |
ST95 | 14 | 0 | 6 (42.9%) | 5 (35.7%) | 3 (21.4%) |
ST73 | 5 | 0 | 5 (100%) | 0 | 0 |
ST127 | 2 | 0 | 1 (50%) | 0 | 1 (50%) |
ST405 | 2 | 0 | 1 (50%) | 0 | 1 (50%) |
ST357 | 2 | 0 | 0 | 2 (100%) | 0 |
ST453 | 2 | 0 | 1 (50%) | 0 | 1 (50%) |
ST1196 | 2 | 0 | 2 (100%) | 0 | 0 |
ST10 | 1 | 0 | 1 (100%) | 0 | 0 |
ST117 | 1 | 0 | 1 (100%) | 0 | 0 |
ST126 | 1 | 0 | 0 | 1 (100%) | 0 |
ST144 | 1 | 0 | 1 (100%) | 0 | 0 |
ST345 | 1 | 0 | 1 (100%) | 0 | 0 |
ST354 | 1 | 0 | 0 | 1 (100%) | 0 |
ST420 | 1 | 0 | 0 | 1 (100%) | 0 |
ST429 | 1 | 1 (100%) | 0 | 0 | 0 |
ST457 | 1 | 0 | 1 (100%) | 0 | 0 |
ST607 | 1 | 0 | 1 (100%) | 0 | 0 |
ST648 | 1 | 0 | 1 (100%) | 0 | 0 |
ST683 | 1 | 0 | 1 (100%) | 0 | 0 |
ST1193 | 1 | 0 | 1 (100%) | 0 | 0 |
ST1304 | 1 | 0 | 0 | 0 | 1 (100%) |
ST1380 | 1 | 0 | 0 | 0 | 1 (100%) |
ST1415 | 1 | 0 | 0 | 0 | 1 (100%) |
ST1851 | 1 | 0 | 0 | 1 (100%) | 0 |
ST2074 | 1 | 0 | 1 (100%) | 0 | 0 |
ST2732 | 1 | 0 | 1 (100%) | 0 | 0 |
ST3532 | 1 | 0 | 0 | 0 | 1 (100%) |
ST6998 | 1 | 0 | 0 | 1 (100%) | 0 |
ST7344 | 1 | 0 | 0 | 0 | 1 (100%) |
Un-typable | 4 | 0 | 2 (50%) | 1 (25%) | 1 (25%) |
Total | 72 | 1 | 46 | 13 | 12 |
Discussion
We found that factors as DM with organ involvement and values of ALP were different in the two groups analyzed. Hyperglycemia due to DM, which is a metabolic disorder, impairs leucocyte functions [
11,
12], and it has been shown that DM is related to the severity or mortality of sepsis [
13,
14]. However, opposite results have also been reported, for example, septic patients with DM develop acute respiratory failure with less frequency [
15], and DM is not associated with the mortality of
Enterobacterales bacteremia [
16]. Importantly, DM without complications was associated with the 30-days mortality caused by
Staphylococcus aureus bacteremia, while DM with complications was not [
17]. Overall, the mechanism and effect on the severity of bacteremia are not clear, and a more detailed analysis on DM and the immune response in bacteremia would be needed.
ALP levels, which are related with cholestasis, are elevated in acute biliary tract infection and in other diseases such as primary biliary cholangitis, primary sclerosing cholangitis, and non-hepatobiliary disease, in a clinical setting [
18]. ALP was measured according to the method of the Japan Society of Clinical Chemistry [
19], which differ from that of the International Federation of Clinical Chemistry and Laboratory Medicine. The Japanese method is influenced by ALP derived from the small intestine, and therefore the ALP values observed in the severe and non-severe might be influenced by this, affecting the accuracy of the determination. Here, the values of each ALP fractions were not measured due to the retrospective characteristics of the study.
Next, we found BEC mainly belonged to the B2 phylogroup, the most frequent group among extra-intestinal pathogenic
E. coli [
6]. The sequence types of the isolates were diverse; however, no differences were found between the non-severe and severe groups.
Acute biliary tract infections are caused by obstruction/stasis of biliary flow and influx of intestinal microorganisms. The human intestinal tract has been recognized as a reservoir of extraintestinal pathogenic
E. coli strains, such as uropathogenic
E. coli [
20]. Once
E. coli translocate into the biliary tract due to stasis/obstruction, acute biliary tract infections can occur and induce bacteremia.
The intestinal
E. coli population are known to express many virulence factors. Some of these factors are needed for persistent colonization of the gut, for example,
E. coli is resistant to the effects of bile [
21]. In response to bile stress, both commensal and pathogenic
E. coli strains, and especially enteropathogenic
E. coli strains, activate stress response pathways [
22,
23], efflux pumps [
24], and production of toxins [
25] in the gut. As there are high concentrations of bile acid in the biliary tract, resistance against bile might play an important role in pathogenicity.
In our study, other virulence factors needed during infection, such as those related with iron acquisition, adhesion, and invasion, were analyzed.
In the present study, the iutA gene was found at significantly lower frequency in the E. coli detected in the severe group than in those of the non-severe group.
The
iutA gene encodes the aerobactin siderophore ferric receptor protein, facilitates iron acquisition by mediating the uptake of siderophores [
26]. In a chicken infection model,
iutA expression in extraintestinal pathogenic
E. coli strains was at least 50-fold higher compared to in vitro grown bacteria [
27]. In mammalian hosts, iron is tightly bound to various proteins, such as hemoproteins and ferritin [
28], making free iron availability for pathogenic bacteria scarce. In biliary tract infections, bile is an iron-limiting environment [
29]. Bile stress also causes increased expression of genes encoding virulence factors associated with iron scavenging in
E. coli [
30]. Therefore,
E. coli strains harboring the
iutA gene may become competitive in bile, 77.3% of the
E. coli isolates from the non-severe group and approximately 50% of those from the severe group harbored the
iutA gene.
It has been reported that
iutA vaccine protect mice in a sepsis challenge model [
31] and urinary tract infection model [
32]. This may indicate that the
iutA gene product might be easily recognized as an antigen by host immune systems, leading to the elimination of the
E. coli strains harboring the
iutA gene, in bile. Paradoxically, the
iutA gene expression constitutes both an advantage and a disadvantage for
E. coli as permits
E. coli proliferation in the bile, but could also increase
E. coli susceptibility to elimination as it can be recognized by the immune system. Excessive
E. coli proliferation might cause an increase in inflammation and the patients might decline to a more severe condition. In this study, we analyzed
E. coli isolates from blood cultures of patients with bacteremic biliary tract infection. We hypothesized that the lower frequency of the
iutA gene in the isolates from the severe group might be due to the elimination of the
iutA-expressing isolates by the immune system before they translocate to the blood. Further studies will be needed to accurately explain this hypothesis, as other virulence factors different than
iutA might be needed for translocation through the barrier between bile and blood.
In contrast,
E. coli strains containing the
ibeA gene were found in a higher proportion in the severe group. The
ibeA gene encodes a 50-kDa protein that participates in
E. coli penetration in the microvascular endothelial cells of the human brain, allowing
E. coli to cross the blood brain barrier. This virulence factor has an important role in neonatal meningitis [
33,
34]. IbeA may also be essential for the invasion of intestinal epithelial cells and macrophages [
35]. The
ibeA-positive
E. coli were detected among adherent-invasive
E. coli isolates from pediatric Crohn's disease patients (positive rate: 81.8%) [
36], bacteremic
E. coli isolates that translocated from the gastrointestinal tract (27%) [
37] and avian pathogenic
E. coli isolates (26%) [
38].
No information regarding the relationship between the
ibeA and biliary tract epithelium cells has been reported; therefore, the mechanism by which the
ibeA gene expression could contribute to the severity of acute biliary infection is unknown. However, it has been reported that
E. coli in the gut can flood into the bile duct causing acute biliary tract infection, and that
ibeA-positive
E. coli strains show increased oxidative stress (H
2O
2) resistance [
39] and persistence in macrophage [
35]. These characteristics might be an advantageous as allows the proliferation of
E. coli in the bile and confers oxidative stress resistance and the possibility to escape by gathering inside the macrophages and then passing into the blood.
IbeA inhibitors have been discovered to prevent invasion of human brain microvascular endothelial cells in vitro [
40]. It would be worthwhile to investigate whether
E. coli strains harboring
ibeA can perform internalization, and whether
ibeA is essential to invade from bile duct to vessels through in vitro experiments using
ibeA inhibitors.
The prevalence of the
iutA and the
ibeA genes and related ST lineages were evaluated in this study. All the ST131 isolates were
iutA-positive but
ibeA-negative. ST131 is one of the major extraintestinal pathogenic
E. coli global lineages and ST131 clade C epidemiologically emerged from clade B, approximately in the year 2002 [
41]; a comparison between clades B and C showed that all clade B isolates were
ibeA-positive, while all clade C were
ibeA-negative [
41]. Moreover,
ibeA gene inactivation resulted in loss of early biofilm formation [
41]. In Japan, ST131 clade C emerged around the year 2003 and by 2014, all the ESBL-producing ST131 isolates were from clade C [
42]. As the isolates analyzed in this study were collected from 2013 to 2015, the
ibeA prevalence among ST131 might have been affected by the epidemiological changes of clades but the rate of the ESBL-producers in our study was just 41.2% among the ST131 isolates. The proportion of ST lineage between the severe group and the non-severe group did not show differences and the relationship between
ibeA prevalence and the severity of bacteremia was significant.
This study has several limitations. First, although cholangitis is a polymicrobial infection [
3], we have investigated only one
E. coli strain from each patient except for one patient without analyzing other
E. coli strains found in the bile. This comparison might reveal whether
ibeA-positive strains can more easily escape or invade into the blood compared to strains that remained in the bile. Second, this study was conducted at a single institution; a larger multi-center study is needed to assess potential bias in the epidemiology of phylogenetic patterns and virulence factors and to be able to detect statistically significant predictors. Third, the multivariable analysis of the data including both the
iutA and the
ibeA genes could not be performed because the sample size was too small for the analysis to be reliable.
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