Study subjects
The retrospective study was approved by the Ethics Committee of Beijing Children’s Hospital, Capital Medical University, and performed according to the Declaration of Helsinki. The written informed consents for participation in the study were obtained from the parents of participants. Patients aged 0–18 years who were diagnosed with CNSC and hospitalized between March 2010 and March 2019 at Beijing Children’s Hospital affiliated to Capital Medical University and who had complete medical records were included in this study. Suspected cases without positive pathogen findings were excluded. Immunosuppressive therapy, organ or bone marrow transplantation, and malignant tumours were also excluded. Personal information, past medical history, clinical manifestations, test results, imaging data, related complications, treatment regimens, post-discharge outcomes, pathogen detection and WES results were collected. The following information was obtained by telephone follow-up and outpatient visits: the full contents of the children’s version of the extended Glasgow Outcome Scale, medication and surgical treatment after discharge, and sequelae (e.g., symptomatic epilepsy, hearing impairment, mental retardation, delayed gross motor or fine motor development). Based on the prognosis at follow-up, the patients were divided into a deceased group and a survival group.
High-risk factors included extreme prematurity, extremely low birth weight, perinatal hypoxia, immunodeficiency, intensive care unit (ICU) admission, intubation history, broad-spectrum antibiotics, cerebrospinal fluid (CSF) leakage, the presence of prosthetic devices (including central venous catheters and ventricular-peritoneal shunts), history of surgery or trauma within the past 3 months, diabetes mellitus, total parenteral nutrition, hemodialysis therapy, and recurrent thrush or onychomycosis. Complications included infection-associated complications (septic shock, diffuse intravascular coagulation, bone marrow suppression, and multiple organ failure), neurological complications (e.g., seizures, neurodevelopmental sequelae, subdural effusion, ependymitis, hydrocephalus, brain abscess, cerebral infarction, cerebral haemorrhage, venous sinus thrombosis, and cerebral herniation), and treatment-related complications (e.g., adverse drug reactions, catheter-related complications).
Clinical definitions
CNS infections: CNS infections include meningitis, encephalitis, and brain abscesses, and could be caused by pathogens (e.g., bacteria, virus, fungi, and tuberculosis). The diagnosis is typically made by identifying clinical symptoms and signs, evaluation of serology and CSF, demonstration of histopathology, and neuroimaging modalities [
9,
10].
CNSC: Clinical diagnosis meets the criteria for CNS infections, and
Candida albicans is cultured from sterile body fluids (e.g., blood, CSF, and intra-articular effusion) [
11,
12].
IFD: Confirmed cases meet the requirement of a positive fungal culture of body fluids or tissues that are usually sterile (e.g., blood, CSF, lung tissue, and deep lymph nodes) and exhibit relevant symptoms and signs [
13,
14].
IC: The diagnostic criteria are based on IFD. Notably, the aseptic sites referred to in the standard do not include all organs in contact with the external environment, such as the respiratory tract, genitourinary tract, and digestive tract, because these organs are common sites of
Candida colonization [
5].
Community-acquired infections: Onset occurs within 48 h of admission or more than 48 h after discharge.
Hospital-acquired infections: Onset occurs more than 48 h after admission or within 48 h after discharge in patients who have no infection symptoms and are not in a latent period at admission.
Fungal culture and drug susceptibility test
Samples, such as blood, CSF, and intra-articular effusion, were inoculated onto Sabourand’s agar medium and incubated in an incubator at 37 °C for 48 h. Suspicious colonies on the plates were further separated and purified, and the species were identified by Matrix-Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry (MALDI-TOF MS) or Internal Transcribed Spacer (ITS) sequencing. The drug susceptibility tests were performed using an ATB Fungus 3 kit (Bio-Mérieux, France). The minimum inhibitory concentration (MIC) clinical breakpoints of fluconazole and voriconazole for
Candida albicans were interpreted according to clinical and laboratory standards institute (CLSI) M60: fluconazole—susceptible (S) ≤ 2 µg/mL, susceptible-dose dependent (SDD) = 4 µg/mL, and resistant (R) ≥ 8 µg/mL; voriconazole—S ≤ 0.12 µg/mL, intermediate (I) = 0.25–0.5 µg/mL, and R ≥ 1 µg/mL [
15]. There were no MIC clinical breakpoints for amphotericin B, and our study used epidemiological cutoff value (ECV, 2 µg/mL) to determine whether the strain was wide type (WT) or non-wild type (NWT) according to CLSI M59 [
16]. There were no MIC clinical breakpoints of itraconazole and flucytosine for
Candida albicans based on CLSI methods.
WES
In attempt to identify an underlying etiological factor for susceptibility to CNSC, WES was done on a subset of patients with their parents’ approval. DNA was isolated from peripheral blood samples obtained from patients and parents using the Gentra Puregene Blood Kit (Qiagen, Hilden, Germany). Whole exome was captured using a SureSelect Human All Exon Kit (Agilent Technologies, Santa Clara, CA, USA). WES was performed on an Illumina Hiseq X Analyzer (Illumina, San Diego, CA) with 150 base paired-end runs. Sequence reads were mapped to the GRCh37/hg19 human reference genome. Variants were annotated and filtered by TGex (
http://app.genecards.cn), and selection criteria referred to the principle described in the published paper [
17]. Variants were classified according to the American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP) interpretation standards and guidelines [
18].