Skip to main content

Molecular Typing in Bacterial Infections Haemophilus spp.

  • Chapter
  • First Online:
Molecular Typing in Bacterial Infections

Part of the book series: Infectious Disease ((ID))

Abstract

Although immunization of infants with conjugate vaccines against Haemophilus influenzae serotype b (Hib) has dramatically decreased the incidence of invasive Hib disease in developed countries, H. influenzae remains an important human pathogen able to cause respiratory tract disease as well as invasive disease. In the present Hib post-vaccine era, concern about the potential emergence of non-vaccine preventable strains (both encapsulated non-b and nonencapsulated strains) as important pathogens has arisen. The availability of H. influenzae gene sequences and the advancements in DNA-based techniques have made it possible to apply the DNA-based methods for both molecular detection and molecular epidemiology of H. influenzae. This chapter provides an up-to-date look at the principal molecular methods currently used in the study of H. influenzae in view of the major issues raised in the Hib post-vaccine era.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 179.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 229.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Kilian M (2007) Haemophilus. In: Murray PR, Baron EJO, Jorgensen JH, Landry ML (eds) Manual of clinical microbiology, 9th edn. ASM press, Washington

    Google Scholar 

  2. Turk DC (1984) The pathogenicity of Haemophilus influenzae. J Med Microbiol 18:1–16

    Article  CAS  PubMed  Google Scholar 

  3. Pittman M (1931) Variation and type specificity in the bacterial species Haemophilus influenzae. J Exp Med 53:471

    Article  CAS  PubMed  Google Scholar 

  4. Moxon ER, Kroll JS (1990) The role of bacterial polysaccharide capsule as virulence factors. In: Jann K, Jann B (eds) Bacterial capsules. Springer Verlag, Berlin

    Google Scholar 

  5. Wenger JD, Hightower AW, Facklam RR et al (1990) Bacterial meningitis in the United States, 1986: report of a multistate surveillance study. J Infect Dis 162:1316–1323

    Article  CAS  PubMed  Google Scholar 

  6. Peltola H (2000) Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25 years after the use of the polysaccharide vaccine and a decade after the advent of conjugates. Clin Microbiol Rev 13:302–317

    Article  CAS  PubMed  Google Scholar 

  7. Watt JP, Levine OS, Santosham M (2003) Global reduction of Hib disease: what are the next steps? Proceedings of the meeting Scottsdale, Arizona, September 22-25, 2002. J Pediatr 143:S163–S187

    PubMed  Google Scholar 

  8. Waggoner-Fountain LA, Hendley JO, Cody EJ et al (1995) The emergence of Haemophilus influenzae types e and f as significant pathogens. Clin Infect Dis 21:1322–1324

    Article  CAS  PubMed  Google Scholar 

  9. Slack MP, Azzopardi HJ, Hargreaves RM et al (1998) Enhanced surveillance of invasive Haemophilus influenzae disease in England, 1990 to 1996: impact of conjugate vaccines. Pediatr Infect Dis J 17:S204–S207

    Article  CAS  PubMed  Google Scholar 

  10. Adderson EE, Byington CL, Spencer L et al (2001) Invasive serotype a Haemophilus influenzae infections with a virulence genotype resembling Haemophilus influenzae type b: emerging pathogen in the vaccine era? Pediatrics 108:E18

    Article  CAS  PubMed  Google Scholar 

  11. Ribeiro GS, Reis JN, Cordeiro SM et al (2003) Prevention of Haemophilus influenzae type b (Hib) meningitis and emergence of serotype replacement with type a strains after introduction of Hib immunization in Brazil. J Infect Dis 187:109–116

    Article  PubMed  Google Scholar 

  12. Ladhani S, Ramsay ME, Chandra M et al (2008) No evidence for Haemophilus influenzae serotype replacement in Europe after introduction of the Hib conjugate vaccine. Lancet Infect Dis 8:275–276

    Article  PubMed  Google Scholar 

  13. Tsang R (2008) Changing epidemiology of invasive Haemophilus influenzae disease. Lancet Infect Dis 8:737

    Article  PubMed  Google Scholar 

  14. Cerquetti M, Ciofi degli Atti ML, Cardines R et al (2003) Invasive type e Haemophilus influenzae disease in Italy. Emerg Infect Dis 9:258–261

    Article  PubMed  Google Scholar 

  15. Campos J, Román F, Pérez-Vázquez M et al (2003) Antibiotic resistance and clinical significance of Haemophilus influenzae type f. J Antimicrob Chemother 52:961–962

    Article  CAS  PubMed  Google Scholar 

  16. Campos J, Román F, Pérez-Vázquez M et al (2003) Infections due to Haemophilus influenzae serotype E: microbiological, clinical, and epidemiological features. Clin Infect Dis 37:841–845

    Article  PubMed  Google Scholar 

  17. Kapogiannis BG, Satola S, Keyserling HL et al (2005) Invasive infections with Haemophilus influenzae serotype a containing an IS1016-bexA partial deletion: possible association with virulence. Clin Infect Dis 41:97–103

    Article  Google Scholar 

  18. Ramsay ME, McVernon J, Andrews NJ et al (2003) Estimating Haemophilus influenzae type b vaccine effectiveness in England and Wales by use of the screening method. J Infect Dis 188:481–485

    Article  PubMed  Google Scholar 

  19. Trotter CL, Ramsay ME, Slack MP (2003) Rising incidence of Haemophilus influenzae type b disease in England and Wales indicates a need for a second catch-up vaccination campaign. Commun Dis Public Health 6:55–58

    CAS  PubMed  Google Scholar 

  20. Ladhani S, Slack MP, Heys M et al (2008) Fall in Haemophilus influenzae serotype b (Hib) disease following implementation of a booster campaign. Arch Dis Child 93:665–669

    Article  CAS  PubMed  Google Scholar 

  21. Kroll JS, Loynds BM, Moxon ER (1991) The Haemophilus influenzae capsulation gene cluster: a compound transposon. Mol Microbio 5:1549–1560

    Article  CAS  Google Scholar 

  22. Kroll JS, Loynds BM, Brophy LN et al (1990) The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export. Mol Microbiol 4:1853–1862

    Article  CAS  PubMed  Google Scholar 

  23. van Eldere J, Brophy L, Loynds B et al (1995) Region II of the Haemophilus influenzae type b capsulation locus is involved in serotype-specific polysaccharide synthesis. Mol Microbiol 15:107–118

    Article  PubMed  Google Scholar 

  24. Hoiseth SK, Moxon ER, Silver RP (1986) Genes involved in Haemophilus influenzae type b capsule expression are part of an18.kilobase tandem duplication. Proc Natl Acad Sci USA 83:1106–1110

    Article  CAS  PubMed  Google Scholar 

  25. Kroll JS, Moxon ER, Loynds BM (1993) An ancestral mutation enhancing the fitness and increasing the virulence of Haemophilus influenzae type b. J Infect Dis 168:172–176

    Article  CAS  PubMed  Google Scholar 

  26. Corn PG, Anders J, Takala AK et al (1993) Genes involved in Haemophilus influenae type b capsule expression are frequently amplified. J Infect Dis 167:356–364

    Article  CAS  PubMed  Google Scholar 

  27. Cerquetti M, Cardines R, Ciofi Degli Atti ML et al (2005) Presence of multiple copies of the capsulation b locus in invasive Haemophilus influenzae type b (Hib) strains isolated from children with Hib conjugate vaccine failure. J Infect Dis 192:819–823

    Article  CAS  PubMed  Google Scholar 

  28. Murphy TF (2003) Respiratory infections caused by non-typeable Haemophilus influenzae. Curr Opin Infect Dis 16:129–134

    Article  CAS  PubMed  Google Scholar 

  29. St Geme JW III (2001) The pathogenesis of nontypable Haemophilus influenzae otitis media. Vaccine 19:S41–S50

    Article  Google Scholar 

  30. Sethi S (2004) New developments in the pathogenesis of acute exacerbations of chronic obstructive pulmonary disease. Curr Opin Infect Dis 17:113–119

    Article  PubMed  Google Scholar 

  31. Sarangi J, Cartwright K, Stuart J et al (2000) Invasive Haemophilus influenzae disease in adults. Epidemiol Infect 124:441–447

    Article  CAS  PubMed  Google Scholar 

  32. Falla TJ, Dobson SR, Crook DW et al (1993) Population-based study of non-typeable Haemophilus influenzae invasive disease in children and neonates. Lancet 341:851–854

    Article  CAS  PubMed  Google Scholar 

  33. Heath PT, Booy R, Azzopardi HJ et al (2001) Non-type b Haemophilus influenzae disease: clinical and epidemiologic characteristics in the Haemophilus influenzae type b vaccine era. Pediatr Infect Dis J 20:300–305

    Article  CAS  PubMed  Google Scholar 

  34. Cuthill SL, Farley MM, Donowitz LG (1999) Nontypable Haemophilus influenzae meningitis. Pediatr Infect Dis J 18:660–662

    Article  CAS  PubMed  Google Scholar 

  35. Cardines R, Giufrè M, Mastrantonio P et al (2007) Nontypeable Haemophilus influenzae meningitis in children: phenotypic and genotypic characterization of isolates. Pediatr Infect Dis 26:577–582

    Article  Google Scholar 

  36. Dagan R, Fraser D, Roitman M et al (1999) Effectiveness of a nationwide infant immunization program against Haemophilus influenzae b. Vaccine 17:134–141

    Article  CAS  PubMed  Google Scholar 

  37. Heath PT, McVernon J (2002) The UK Hib vaccine experience. Arch Dis Child 86:396–399

    Article  CAS  PubMed  Google Scholar 

  38. Dworkin MS, Park L, Borchardt SM (2007) The changing epidemiology of invasive Haemophilus influenzae disease, especially in persons ≥65 years old. Clin Infect Dis 44:810–816

    Article  PubMed  Google Scholar 

  39. Hardy GG, Tudor SM, St III Geme JW (2002) The pathogenesis of disease due to Nontypeable Haemophilus influenzae. In: Herbert M, Hood DW, Moxon ER (eds) Haemophilus influenzae protocols. Methods in molecular medicine, vol 71. Humana Press, Totowa, NJ, pp 1–28

    Google Scholar 

  40. Erwin AL, Smith AL (2007) Nontypeable Haemophilus influenzae: understanding virulence and commensal behavior. Trends Microbiol 15:355–362

    Article  CAS  PubMed  Google Scholar 

  41. Dawid S, Barenkamp SJ, St Geme JW III (1999) Variation in expression of the Haemophilus influenzae HMW adhesins: a prokaryotic system reminiscent of eukaryotes. Proc Natl Acad Sci USA 96:1077–1082

    Article  CAS  PubMed  Google Scholar 

  42. Giufrè M, Carattoli A, Cardines R et al (2008) Variation in expression of HMW1 and HMW2 adhesins in invasive nontypeable Haemophilus influenzae isolates. BMC Microbiol 8:83

    Article  PubMed  CAS  Google Scholar 

  43. Duim B, van Alphen L, Eijk P et al (1994) Antigenic drift of non-encapsulated Haemophilus influenzae major outer membrane protein P2 in patients with chronic bronchitis is caused by point mutations. Mol Microbiol 11:1181–1189

    Article  CAS  PubMed  Google Scholar 

  44. Sippel JE (1984) Use of the directigen latex agglutination test for detection of Haemophilus influenzae, Streptococcus pneumoniae, and Neisseria meningitidis antigens in cerebrospinal fluid from meningitis patients. J Clin Microbiol 20:884–886

    CAS  PubMed  Google Scholar 

  45. Gray LD, Fedorko DP (1992) Laboratory diagnosis of bacterial meningitis. Clin Microbiol Rev 5:130–145

    CAS  PubMed  Google Scholar 

  46. Clarridge JE 3rd (2004) Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev 17:840–862

    Article  CAS  PubMed  Google Scholar 

  47. Sontakke S, Cadenas MB, Maggi RG et al (2009) Use of broad range16S rDNA PCR in clinical microbiology. J Microbiol Methods 76:217–225

    Article  CAS  PubMed  Google Scholar 

  48. Fredricks DN, Relman DA (1999) Application of polymerase chain reaction to the diagnosis of infectious diseases. Clin Infect Dis 29:475–486

    Article  CAS  PubMed  Google Scholar 

  49. Welinder-Olsson C, Dotevall L, Hogevik H et al (2007) Comparison of broad-range bacterial PCR and culture of cerebrospinal fluid for diagnosis of community-acquired bacterial meningitis. Clin Microbiol Infect 13:879–886

    Article  CAS  PubMed  Google Scholar 

  50. Arosio M, Nozza F, Rizzi M et al (2008) Evaluation of the MicroSeq 500 16S rDNA-based gene sequencing for the diagnosis of culture-negative bacterial meningitis. New Microbiol 3:343–349

    Google Scholar 

  51. Rådström P, Bäckman A, Qian N et al (1994) Detection of bacterial DNA in cerebrospinal fluid by an assay for simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy. J Clin Microbiol 32:2738–2744

    PubMed  Google Scholar 

  52. Pandit L, Kumar S, Karunasagar I et al (2005) Diagnosis of partially treated culture-negative bacterial meningitis using 16S rRNA universal primers and restriction endonuclease digestion. J Med Microbiol 54:539–542

    Article  CAS  PubMed  Google Scholar 

  53. Chakrabarti P, Das BK, Kapil A (2009) Application of 16S rDNA based seminested PCR for diagnosis of acute bacterial meningitis. Indian J Med Res 129:182–188

    CAS  PubMed  Google Scholar 

  54. Chiba N, Murayama SY, Morozumi M et al (2009) Rapid detection of eight causative pathogens for the diagnosis of bacterial meningitis by real-time PCR. J Infect Chemother 15:92–98

    Article  CAS  PubMed  Google Scholar 

  55. Wellinghausen N, Wirths B, Franz AR et al (2004) Algorithm for the identification of bacterial pathogens in positive blood cultures by real-time LightCycler polymerase chain reaction (PCR) with sequence-specific probes. Diagn Microbiol Infect Dis 48:229–241

    Article  CAS  PubMed  Google Scholar 

  56. Poppert S, Essig A, Stoehr B et al (2005) Rapid diagnosis of bacterial meningitis by real-time PCR and fluorescence in situ hybridization. J Clin Microbiol 43:3390–3397

    Article  CAS  PubMed  Google Scholar 

  57. Chakravorty S, Helb D, Burday M et al (2007) A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. J Microbiol Methods 69:330–339

    Article  CAS  PubMed  Google Scholar 

  58. Corless CE, Guiver M, Borrow R et al (2001) Simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and Streptococcus pneumoniae in suspected cases of meningitis and septicemia using real-time PCR. J Clin Microbiol 39:1553–1558

    Article  CAS  PubMed  Google Scholar 

  59. Azzari C, Moriondo M, Indolfi G et al (2008) Molecular detection methods and serotyping performed directly on clinical samples improve diagnostic sensitivity and reveal increased incidence of invasive disease by Streptococcus pneumoniae in Italian children. J Med Microbiol 57:1205–1212

    Article  CAS  PubMed  Google Scholar 

  60. Ceyhan M, Yildirim I, Balmer P et al (2008) A prospective study of etiology of childhood acute bacterial meningitis, Turkey. Emerg Infect Dis 14:1089–1096

    Article  PubMed  Google Scholar 

  61. Sam IC, Smith M (2005) Failure to detect capsule gene bexA in Haemophilus influenzae types e and f by real-time PCR due to sequence variation within probe binding sites. J Med Microbiol 54:453–455

    Article  PubMed  Google Scholar 

  62. Zhou J, Law DK, Sill ML et al (2007) Nucleotide sequence diversity of the bexA gene in serotypeable Haemophilus influenzae strains recovered from invasive disease patients in Canada. J Clin Microbiol 45:1996–1999

    Article  CAS  PubMed  Google Scholar 

  63. van Ketel RJ, de Wever B, van Alphen L (1990) Detection of Haemophilus influenzae in cerebrospinal fluids by polymerase chain reaction DNA amplification. J Med Microbiol 33:271–276

    Article  PubMed  Google Scholar 

  64. Nelson MB, Munson RS Jr, Apicella MA et al (1991) Molecular conservation of the P6 outer membrane protein among strains of Haemophilus influenzae: analysis of antigenic determinants, gene sequences, and restriction fragment length polymorphisms. Infect Immun 59:2658–2663

    CAS  PubMed  Google Scholar 

  65. Hassan-King M, Baldeh I, Adegbola R et al (1996) Detection of Haemophilus influenzae and Streptococcus pneumoniae DNA in blood culture by a single PCR assay. J Clin Microbiol 34:2030–2032

    CAS  PubMed  Google Scholar 

  66. Menezes-Martins LF, Menezes-Martins JJ, Michaelsen VS et al (2005) Diagnosis of parapneumonic pleural effusion by polymerase chain reaction in children. J Pediatr Surg 40:1106–1110

    Article  PubMed  Google Scholar 

  67. Utine GE, Pinar A, Ozçelik U et al (2008) Pleural fluid PCR method for detection of Staphylococcus aureus, Streptococcus pneumoniae and Haemophilus influenzae in pediatric parapneumonic effusions. Respiration 75:437–342

    Article  CAS  PubMed  Google Scholar 

  68. van Belkum A, Renders NH, Smith S et al (2000) Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients. FEMS Immunol Med Microbiol 27:51–57

    Article  PubMed  Google Scholar 

  69. Morozumi M, Nakayama E, Iwata S et al (2006) Simultaneous detection of pathogens in clinical samples from patients with community-acquired pneumonia by real-time PCR with pathogen-specific molecular beacon probes. J Clin Microbiol 44:1440–1446

    Article  CAS  PubMed  Google Scholar 

  70. Hamano-Hasegawa K, Morozumi M, Nakayama E et al (2008) Comprehensive detection of causative pathogens using real-time PCR to diagnose pediatric community-acquired pneumonia. J Infect Chemother 14:424–432

    Article  CAS  PubMed  Google Scholar 

  71. Ueyama T, Kurono Y, Shirabe K et al (1995) High incidence of Haemophilus influenzae in nasopharyngeal secretions and middle ear effusions as detected by PCR. J Clin Microbiol 33:1835–1838

    CAS  PubMed  Google Scholar 

  72. Gotoh K, Qin L, Watanabe K et al (2008) Prevalence of Haemophilus influenzae with resistant genes isolated from young children with acute lower respiratory tract infections in Nha Trang, Vietnam. J Infect Chemother 14:349–353

    Article  CAS  PubMed  Google Scholar 

  73. Heath PT, Booy R, Griffiths H et al (2000) Clinical and immunological risk factors associated with Haemophilus influenzae type b conjugate vaccine failure in childhood. Clin Infect Dis 31:973–980

    Article  CAS  PubMed  Google Scholar 

  74. Shively RG, Shigei JT, Peterson EM et al (1981) Typing of Haemophilus influenzae by coagglutination and conventional slide agglutination. J Clin Microbiol 14:706–708

    CAS  PubMed  Google Scholar 

  75. Wallace RJ Jr, Musher DM, Septimus EJ et al (1981) Haemophilus influenzae infections in adults: characterization of strains by serotypes, biotypes, and β-lactamase production. J Infect Dis 144:101–106

    Article  PubMed  Google Scholar 

  76. Ogilvie C, Omikunle A, Wang Y et al (2001) Capsulation loci of non-serotype b encapsulated Haemophilus influenzae. J Infect Dis 184:14414–14419

    Article  Google Scholar 

  77. Kroll JS, Hopkins I, Moxon ER et al (1988) Capsule loss in H. influenzae type b occurs by recombination-mediated disruption of a gene essential for polysaccharide export. Cell 53:347–356

    Article  CAS  PubMed  Google Scholar 

  78. Kroll JS, Ely S, Moxon ER (1991) Capsular typing of Haemophilus influenzae with a DNA probe. Mol Cell Probes 5:375–379

    Article  CAS  PubMed  Google Scholar 

  79. Mühlemann K, Balz M, Aebi S et al (1996) Molecular characteristics of Haemophilus influenzae causing invasive disease during the period of vaccination in Switzerland: analysis of strains isolated between 1986 and 1993. J Clin Microbiol 34:560–563

    PubMed  Google Scholar 

  80. Falla TJ, Crook DW, Brophy LN et al (1994) PCR for capsular typing of Haemophilus influenzae. J Clin Microbiol 32:2382–2386

    CAS  PubMed  Google Scholar 

  81. Hobson RP, Williams A, Rawal K et al (1995) Incidence and spread of Haemophilus influenzae on an Antarctic base determined using the polymerase chain reaction. Epidemiol Infect 114:93–103

    Article  CAS  PubMed  Google Scholar 

  82. Cerquetti M, Ciofi degli Atti ML, Renna G et al (2000) Characterization of non-type b Haemophilus influenzae strains isolated from patients with invasive disease. J Clin Microbiol 38:4649–4652

    CAS  PubMed  Google Scholar 

  83. LaClaire LL, Tondella ML, Beall DS et al (2003) Identification of Haemophilus influenzae serotypes by standard slide agglutination serotyping and PCR-based capsule typing. J Clin Microbiol 41:393–396

    Article  CAS  PubMed  Google Scholar 

  84. Satola SW, Collins JT, Napier R et al (2007) Capsule gene analysis of invasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016 among nontypeable isolates. J Clin Microbiol 45:3230–3238

    Google Scholar 

  85. Maaroufi Y, De Bruyne JM, Heymans C et al (2007) Real-time PCR for determining capsular serotypes of Haemophilus influenzae. J Clin Microbiol 45:2305–2308

    Article  CAS  PubMed  Google Scholar 

  86. Kilian M (1976) A taxonomic study of the genus Haemophilus, with the proposal of a new species. J Gen Microbiol 93:9–62

    Article  CAS  PubMed  Google Scholar 

  87. Bijlmer HA, van Alphen L, Geelen-van den Broek L et al (1992) Molecular epidemiology of Haemophilus influenzae type b in the Gambia. J Clin Microbiol 30:386–390

    CAS  PubMed  Google Scholar 

  88. van Alphen L, Takala AK, Geelen-van den Broek L et al (1992) Changes in the distribution of Haemophilus influenzae type b clones associated with widespread infant vaccination in Finland. J Infect Dis 166:1340–1345

    Article  PubMed  Google Scholar 

  89. Porras O, Caugant DA, Lagergård T et al (1986) Application of multilocus enzyme gel electrophoresis to Haemophilus influenzae. Infect Immun 53:71–78

    CAS  PubMed  Google Scholar 

  90. Musser JM, Kroll JS, Moxon ER et al (1988) Clonal population structure of encapsulated Haemophilus influenzae. Infect Immun 56:1837–1845

    CAS  PubMed  Google Scholar 

  91. Musser JM, Kroll JS, Granoff DM et al (1990) Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae. Rev Infect Dis 12:75–111

    Article  CAS  PubMed  Google Scholar 

  92. Musser JM, Barenkamp SJ, Granoff DM et al (1986) Genetic relationships of serologically nontypable and serotype b strains of Haemophilus influenzae. Infect Immun 52(1):183–191

    CAS  PubMed  Google Scholar 

  93. Meats E, Feil EJ, Stringer S et al (2003) Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol 41:1623–1636

    Article  CAS  PubMed  Google Scholar 

  94. van Alphen L, Caugant DA, Duim B et al (1997) Differences in genetic diversity of nonecapsulated Haemophilus influenzae from various diseases. Microbiology 143:1423–1431

    Article  PubMed  Google Scholar 

  95. Bruun B, Gahrn-Hansen B, Westh H et al (2004) Clonal relationship of recent invasive Haemophilus influenzae serotype f isolates from Denmark and the United States. J Med Microbiol 53:1161–1165

    Article  PubMed  Google Scholar 

  96. Leaves NI, Jordens JZ (1994) Development of a ribotyping scheme for Haemophilus influenzae type b. Eur J Clin Microbiol Infect Dis 13:1038–1045

    Article  CAS  PubMed  Google Scholar 

  97. Smith-Vaughan HC, Sriprakash KS, Mathews JD et al (1995) Long PCR-ribotyping of nontypeable Haemophilus influenzae. J Clin Microbiol 33:1192–1195

    CAS  PubMed  Google Scholar 

  98. Jordens JZ, Leaves NI (1997) Source of variation detected in ribotyping patterns of Haemophilus influenzae: comparison of traditional ribotyping, PCR-ribotyping and rDNA restriction analysis. J Med Microbiol 46:763–772

    Article  CAS  PubMed  Google Scholar 

  99. Smith-Vaughan HC, Sriprakash KS, Leach AJ et al (1998) Low genetic diversity of Haemophilus influenzae type b compared to nonencapsulated H. influenzae in a population in which H. influenzae is highly endemic. Infect Immun 66:3403–3409

    CAS  PubMed  Google Scholar 

  100. Pettigrew MM, Foxman B, Ecevit Z et al (2002) Use of pulsed-field gel electrophoresis, enterobacterial repetitive intergenic consensus typing, and automated ribotyping to assess genomic variability among strains of nontypeable Haemophilus influenzae. J Clin Microbiol 40:660–662

    Article  CAS  PubMed  Google Scholar 

  101. Lancellotti M, Pace F, Stehling EG et al (2008) Ribotyping, biotyping and capsular typing of Haemophilus influenzae strains isolated from patients in Campinas, southeast Brazil. Braz J Infect Dis 12:430–437

    Article  CAS  PubMed  Google Scholar 

  102. Sacchi CT, Alber D, Dull P et al (2005) High level of sequence diversity in the 16S rRNA genes of Haemophilus influenzae isolates is useful for molecular subtyping. J Clin Microbiol 43:3734–3742

    Article  CAS  PubMed  Google Scholar 

  103. Versalovic J, Koeuth T, Lupski JR (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19:6823–6831

    Article  CAS  PubMed  Google Scholar 

  104. Gomez-De-Leon P, Santos JI, Caballero J et al (2000) (2000) Genomic variability of Haemophilus influenzae isolated from Mexican children determined by using enterobacterial repetitive intergenic consensus sequences and PCR. J Clin Microbiol 38:2504–2511

    CAS  PubMed  Google Scholar 

  105. van Belkum A, Melchers WJ, Ijsseldijk C et al (1997) Outbreak of amoxicillin-resistant Haemophilus influenzae type b: variable number of tandem repeats as novel molecular markers. J Clin Microbiol 35:1517–1520

    PubMed  Google Scholar 

  106. van Belkum A, Scherer S, van Leeuwen W et al (1997) Variable number of tandem repeats in clinical strains of Haemophilus influenzae. Infect Immun 65:5017–5027

    PubMed  Google Scholar 

  107. Schouls LM, van der Ende A, van de Pol I et al (2005) Increase in genetic diversity of Haemophilus influenzae serotype b (Hib) strains after introduction of Hib vaccination in The Netherlands. J Clin Microbiol 43:2741–2749

    Article  CAS  PubMed  Google Scholar 

  108. Lee JJ, Smith HO (1988) Sizing of the Haemophilus influenzae Rd genome by pulsed-field agarose gel electrophoresis. J Bacteriol 170:4402–4405

    CAS  PubMed  Google Scholar 

  109. Tarasi A, D’Ambrosio F, Perrone G et al (1998) Susceptibility and genetic relatedness of invasive Haemophilus influenzae type b in Italy. Microb Drug Resist 4:301–306

    Article  CAS  PubMed  Google Scholar 

  110. Mitsuda T, Kuroki H, Ishikawa N et al (1999) Molecular epidemiological study of Haemophilus influenzae serotype b strains obtained from children with meningitis in Japan. J Clin Microbiol 37:2548–2552

    CAS  PubMed  Google Scholar 

  111. Moor PE, Collignon PC, Gilbert GL (1999) Pulsed-field gel electrophoresis used to investigate genetic diversity of Haemophilus influenzae type b isolates in Australia shows differences between Aboriginal and non-Aboriginal isolates. J Clin Microbiol 37:1524–1531

    CAS  PubMed  Google Scholar 

  112. Saito M, Umeda A, Yoshida S (1999) Subtyping of Haemophilus influenzae strains by pulsed-field gel electrophoresis. J Clin Microbiol 37:2142–2147

    CAS  PubMed  Google Scholar 

  113. Lucher LA, Reeves M, Hennessy T et al (2002) Reemergence, in southwestern Alaska, of invasive Haemophilus influenzae type b disease due to strains indistinguishable from those isolated from vaccinated children. J Infect Dis 186:958–965

    Article  PubMed  Google Scholar 

  114. Campos J, Aracil B, Román F et al (2003) Molecular epidemiology of Haemophilus influenzae type b isolated from children with clinical cases of conjugate vaccine failures. J Clin Microbiol 41:3915–3918

    Article  CAS  PubMed  Google Scholar 

  115. Campos J, Hernando M, Román F (2004) Analysis of invasive Haemophilus influenzae infections after extensive vaccination against H. influenzae type b. Group of Invasive Haemophilus Infections of the Autonomous Community of Madrid, Spain. J Clin Microbiol 42:524–529

    Article  PubMed  Google Scholar 

  116. Dabernat H, Pélissier R, Faucon G et al (2005) Genotyping of type b Haemophilus influenzae strains, comparison of strains collected before and during vaccine availability. Med Mal Infect 35:205–212

    Article  CAS  PubMed  Google Scholar 

  117. Skoczynska A, Lewandowska M, Klarowicz A et al (2005) Prevalence and serotype distribution of encapsulated Haemophilus influenzae isolates from patients with lower respiratory tract infections in Poland. J Clin Microbiol 43:938–941

    Article  PubMed  Google Scholar 

  118. Cerquetti M, Cardines R, Giufrè M et al (2006) Genetic diversity of invasive strains of Haemophilus influenzae type b before and after introduction of the conjugate vaccine in Italy. Clin Infect Dis 43:317–319

    Article  CAS  PubMed  Google Scholar 

  119. Omikunle A, Takahashi S, Ogilvie CL et al (2002) Limited genetic diversity of recent invasive isolates of non-serotype b encapsulated Haemophilus influenzae. J Clin Microbiol 40:1264–1270

    Article  PubMed  Google Scholar 

  120. Murphy TF, Brauer AL, Schiffmacher AT et al (2004) Persistent colonization by Haemophilus influenzae in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 170:266–272

    Article  PubMed  Google Scholar 

  121. Román F, Cantón R, Pérez-Vázquez M et al (2004) Dynamics of long-term colonization of respiratory tract by Haemophilus influenzae in cystic fibrosis patients shows a marked increase in hypermutable strains. J Clin Microbiol 42:1450–1459

    Article  PubMed  Google Scholar 

  122. Eldika N, Sethi S (2006) Role of nontypeable Haemophilus influenzae in exacerbations and progression of chronic obstructive pulmonary disease. Curr Opin Pulm Med 12:118–124

    Article  PubMed  Google Scholar 

  123. Maiden MC, Bygraves JA, Feil E et al (1998) Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95:3140–3145

    Article  CAS  PubMed  Google Scholar 

  124. Erwin AL, Nelson KL, Mhlanga-Mutangadura T et al (2005) Characterization of genetic and phenotypic diversity of invasive nontypeable Haemophilus influenzae. Infect Immun 73:5853–5863

    Article  CAS  PubMed  Google Scholar 

  125. Erwin AL, Sandstedt SA, Bonthuis PJ et al (2008) Analysis of genetic relatedness of Haemophilus influenzae isolates by multilocus sequence typing. J Bacteriol 190:1473–1483

    Article  CAS  PubMed  Google Scholar 

  126. LaCross NC, Marrs CF, Patel M et al (2008) High genetic diversity of nontypeable Haemophilus influenzae isolates from two children attending a day care center. J Clin Microbiol 46:3817–3821

    Article  PubMed  Google Scholar 

  127. Sill ML, Law DK, Zhou J et al (2007) Population genetics and antibiotic susceptibility of invasive Haemophilus influenzae in Manitoba, Canada, from 2000 to 2006. FEMS Immunol Med Microbiol 51:270–276

    Article  CAS  PubMed  Google Scholar 

  128. Karlsson E, Melhus A (2006) Nontypeable Haemophilus influenzae strains with the capsule-associated insertion element IS1016 may mimic encapsulated strains. APMIS 114:633–640

    Article  CAS  PubMed  Google Scholar 

  129. Satola SW, Napier B, Farley MM (2008) Association of IS1016 with the hia adhesin gene and biotypes V and I in invasive nontypeable Haemophilus influenzae. Infect Immun 76:5221–5227

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marina Cerquetti .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this chapter

Cite this chapter

Cerquetti, M. (2013). Molecular Typing in Bacterial Infections Haemophilus spp.. In: de Filippis, I., McKee, M. (eds) Molecular Typing in Bacterial Infections. Infectious Disease. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-185-1_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-185-1_13

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-184-4

  • Online ISBN: 978-1-62703-185-1

  • eBook Packages: MedicineMedicine (R0)

Publish with us

Policies and ethics