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The complete genomic sequence of Tobacco vein banding mosaic virus and its similarities with other potyviruses

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Abstract

The complete genomic sequence of an isolate of Tobacco vein banding mosaic virus (TVBMV-YND) from Yunnan, China was determined by sequencing overlapping cDNA fragments obtained by RT-PCR with degenerate and/or specific primers. The genome is composed of 9,570 nucleotides (nt) excluding the 3′-terminal poly (A) tail and contains one single open reading frame of 9,240 nt encoding a large polyprotein of 3,079 amino acids with predicted Mr of 348.6 kDa. Phylogenetic analysis of complete genomic sequences confirmed that TVBMV is a distinct species of the genus Potyvirus. Different parts of TVBMV-YND genome shared different levels of identity with other species of potyviruses, while most parts showed greatest identity with Chilli veinal mottle virus among the potyviruses with available complete genomic sequences. TVBMV-YND had a rare Q/N cleavage site for NIb/CP and uncommon RITC motif in HC-Pro that is crucial for aphid transmission of potyviruses.

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Acknowledgments

This study was supported by grants from National Natural Scientific Foundation of China (NSFC, 30471138), Swedish Research Link (348–2003–5011) provided via Vetenskapsrådet, Sweden, Special Research Fund for the Doctoral Program of Higher Education (SRFDP, 20050434003), and The Foundation for Young Scientists in Shandong Province (2004BS06002), which were greatly acknowledged.

Author information

Authors and Affiliations

  1. Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018, Shandong, P.R. China

    Xiao-Qing Yu, Yu-Fei Lan, Hong-Yan Wang, Jin-Liang Liu, Xiao-Ping Zhu & Xiang-Dong Li

  2. Department of Plant Biology and Forest Genetics, Genetics Center, Swedish University of Agricultural Sciences, P.O. Box 7080, Uppsala, 75007, Sweden

    Jari P. T. Valkonen

  3. Department of Applied Biology, University of Helsinki, P.O. Box 27, Helsinki, 00014, Finland

    Jari P. T. Valkonen

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  1. Xiao-Qing Yu
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  2. Yu-Fei Lan
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  3. Hong-Yan Wang
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  4. Jin-Liang Liu
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  5. Xiao-Ping Zhu
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  6. Jari P. T. Valkonen
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  7. Xiang-Dong Li
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Corresponding author

Correspondence to Xiang-Dong Li.

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Xiao-Qing Yu and Yu-Fei Lan contributed equally to this research

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Yu, XQ., Lan, YF., Wang, HY. et al. The complete genomic sequence of Tobacco vein banding mosaic virus and its similarities with other potyviruses. Virus Genes 35, 801–806 (2007). https://doi.org/10.1007/s11262-007-0135-7

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  • DOI: https://doi.org/10.1007/s11262-007-0135-7

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