Background
Results and Discussion
% of sequences assigned | |||||
---|---|---|---|---|---|
Taxonomic Level
|
Taxon Name
|
Malnourished Sample (X)
|
Healthy Sample (Y)
|
Relative Ratio (X/Y)
|
Inference
|
Campylobacteraceae
|
16.7
|
0.5
|
35.3
|
High in malnourished
| |
Helicobacteraceae
|
12
|
1
|
12
|
High in malnourished
| |
Bacteroidaceae
|
12.8
|
3
|
4.2
|
High in malnourished
| |
Porphyromonadaceae
|
5
|
2.8
|
1.7
|
High in malnourished
| |
Clostridiaceae | 5.9 | 4 | 1.5 | - | |
Bacillaceae | 3.7 | 4.9 | 0.8 | - | |
Family | Staphylococcaceae | 1.3 | 2.1 | 0.6 | - |
Streptococcaceae
|
6.1
|
10.4
|
0.6
|
High in healthy
| |
Enterobacteriaceae
|
12.2
|
22.5
|
0.5
|
High in healthy
| |
Methanosarcinaceae
|
1
|
2.2
|
0.5
|
High in healthy
| |
Thermotogaceae
|
1.1
|
2.6
|
0.4
|
High in healthy
| |
Shewanellaceae
|
1.6
|
4.1
|
0.4
|
High in healthy
| |
Eubacteriaceae
|
1.9
|
5.1
|
0.4
|
High in healthy
| |
Campylobacterales
|
26.64
|
1.32
|
20.25
|
High in malnourished
| |
Bacteroidales
|
17.42
|
6.33
|
2.75
|
High in malnourished
| |
Clostridiales | 7.09 | 8.36 | 0.85 | - | |
Bacillales | 10.09 | 12.84 | 0.79 | - | |
Order |
Lactobacillales
|
6.13
|
10.39
|
0.59
|
High in healthy
|
Enterobacteriales
|
10.71
|
19.09
|
0.56
|
High in healthy
| |
Methanosarcinales
|
1.43
|
2.63
|
0.55
|
High in healthy
| |
Alteromonadales
|
1.98
|
4.3
|
0.46
|
High in healthy
| |
Thermotogales
|
0.89
|
2.08
|
0.43
|
High in healthy
| |
Actinomycetales
|
0.54
|
2.2
|
0.25
|
High in healthy
| |
Epsilonproteobacteria
|
21.99
|
1.06
|
20.79
|
High in malnourished
| |
Bacteroidia
|
14.25
|
4.51
|
3.16
|
High in malnourished
| |
Clostridia | 6.46 | 6.6 | 0.98 | - | |
Bacilli | 16.77 | 20.49 | 0.82 | - | |
Class | Alphaproteobacteria | 1.75 | 2.43 | 0.72 | - |
Methanomicrobia | 1.88 | 2.96 | 0.64 | - | |
Gammaproteobacteria
|
24.28
|
41.37
|
0.59
|
High in healthy
| |
Thermoprotei
|
1.21
|
2.09
|
0.58
|
High in healthy
| |
Actinobacteria (class)
|
0.61
|
2.49
|
0.24
|
High in healthy
| |
Bacteroidetes
|
13.95
|
4.88
|
2.86
|
High in malnourished
| |
Phylum | Proteobacteria | 49.78 | 50.61 | 0.98 | - |
Firmicutes | 24.28 | 26.27 | 0.92 | - | |
Euryarchaeota
|
3.95
|
7.03
|
0.56
|
High in healthy
|
% of sequences assigned | ||||
---|---|---|---|---|
Order Name
|
Malnourished sample (X)
|
Healthy Sample (Y)
|
Relative Ratio (X/Y)
|
Inference
|
Campylobacterales | 78.87 | 0.06 | 1235.57 | High in malnourished |
Clostridiales | 11.4 | 0.1 | 119.1 | High in malnourished |
Lactobacillales | 0.79 | 3.19 | 0.25 | High in healthy |
Enterobacteriales | 0.11 | 5.07 | 0.02 | High in healthy |
Pseudomonadales | 0.04 | 5.27 | 0.01 | High in healthy |
Chloroflexales | 0.02 | 4.44 | 0 | High in healthy |
Desulfurovibrionales | 0 | 4.44 | 0 | High in healthy |
Bifidobacteriales | 0 | 6.98 | N.A | High in healthy |
Xanthomonadales | 0 | 3.21 | N.A | High in healthy |
Plantomycetales | 0 | 2.13 | N.A | High in healthy |
Halobacteriales | 0 | 12.24 | N.A | High in healthy |
Actinomycetales | 0 | 19.72 | N.A | High in healthy |
Burkholderiales | 0 | 19.39 | N.A | High in healthy |
Rhizobiales | 0 | 2.39 | N.A | High in healthy |
Subsystem category | % of Malnourished specific sequences (X) | % of Healthy specific sequences (Y) | Relative Ratio (X/Y) | Relative Ratio (Y/X) |
---|---|---|---|---|
Motility and Chemotaxis | 4.18 | 0.04 | 104.5 | 0.01 |
Membrane Transport | 2.12 | 0.21 | 10.1 | 0.1 |
Respiration | 5.37 | 1.28 | 4.2 | 0.24 |
Virulence | 9.49 | 5.28 | 1.8 | 0.56 |
Stress Response | 1.95 | 1.83 | 1.07 | 0.94 |
Protein Metabolism | 12.1 | 11.44 | 1.06 | 0.95 |
Amino Acids and Derivatives | 8.45 | 8.54 | 0.99 | 1.01 |
DNA Metabolism | 7.01 | 7.37 | 0.95 | 1.05 |
Cofactors, Vitamins, Prosthetic groups and pigments | 7.07 | 7.71 | 0.92 | 1.09 |
Cell wall and Capsule | 6.52 | 7.38 | 0.88 | 1.13 |
Carbohydrates | 5.78 | 7.95 | 0.73 | 1.38 |
Clustering-based Subsystems | 11.5 | 16.24 | 0.71 | 1.41 |
RNA Metabolism | 5.11 | 7.58 | 0.67 | 1.48 |
Cell Division and Cell Cycle | 1.61 | 2.43 | 0.66 | 1.51 |
Unclassified | 2.26 | 4.45 | 0.51 | 1.97 |
Nucleosides and Nucleotides | 3.38 | 6.66 | 0.51 | 1.97 |