Introduction
Materials and methods
Study design
Exposure and outcome data
Trait | GWAS ID | Year | Author | Population | Sample Size | Case (n) | Control (n) | SNP (n) |
---|---|---|---|---|---|---|---|---|
Sleeplessness/insomnia | ukb-b-3957 | 2018 | Ben Elsworth | European | 462,341 | - | - | 9,851,867 |
Ulcer of esophagus | ukb-b-13,731 | 2018 | Ben Elsworth | European | 463,010 | 3,251 | 459,759 | 9,851,867 |
Duodenal ulcer | ukb-b-4725 | 2018 | Ben Elsworth | European | 462,933 | 1,908 | 461,025 | 9,851,867 |
Gastric ulcer | ukb-b-20,078 | 2018 | Ben Elsworth | European | 462,933 | 3,329 | 459,604 | 9,851,867 |
Ulcerative colitis | ukb-b-7584 | 2018 | Ben Elsworth | European | 462,933 | 2,439 | 460,494 | 9,851,867 |
Crohn’s disease | ukb-b-8210 | 2018 | Ben Elsworth | European | 462,933 | 1,401 | 461,532 | 9,851,867 |
Colitis | ukb-b-3044 | 2018 | Ben Elsworth | European | 462,933 | 1,193 | 461,740 | 9,851,867 |
Polyp of stomach and duodenum | ukb-b-3027 | 2018 | Ben Elsworth | European | 463,010 | 1,233 | 461,777 | 9,851,867 |
Polyp of colon | ukb-b-17,845 | 2018 | Ben Elsworth | European | 463,010 | 2,437 | 460,573 | 9,851,867 |
Rectal polyp | ukb-b-8348 | 2018 | Ben Elsworth | European | 463,010 | 1,837 | 461,173 | 9,851,867 |
Haemorrhoidal disease | ebi-a-GCST90014033 | 2021 | Zheng T | European | 944,133 | 218,920 | 725,213 | 8,424,267 |
Nausea and vomiting | ukb-b-4554 | 2018 | Ben Elsworth | European | 463,010 | 6,773 | 456,237 | 9,851,867 |
GI-bleeding | finn-b-K11_GIBLEEDING | 2021 | NA | European | 215,956 | 4,992 | 210,964 | 16,380,464 |
Abdominal pain | ukb-b-6223 | 2018 | Ben Elsworth | European | 463,010 | 11,925 | 451,085 | 9,851,867 |
Change in bowel habit | ukb-b-10,368 | 2018 | Ben Elsworth | European | 463,010 | 2,443 | 460,567 | 9,851,867 |
C-reactive protein level | ieu-b-35 | 2018 | Ligthart, S | European | 204,402 | NA | NA | 2,414,379 |
Neutrophil cell count | ieu-b-34 | 2020 | Vuckovic, D | European | 563,946 | NA | NA | NA |
Lymphocyte cell count | ieu-b-32 | 2020 | Vuckovic, D | European | 563,946 | NA | NA | NA |
Eosinophill percentage | ukb-d-30210_irnt | 2018 | Neale lab | European | 349,861 | NA | NA | 13,586,283 |
Basophil percentage | ukb-d-30220_irnt | 2018 | Neale lab | European | 349,861 | NA | NA | 13,586,283 |
Monocyte percentage | ukb-d-30190_irnt | 2018 | Neale lab | European | 349,861 | NA | NA | 13,586,283 |
Ethics statement
SNPs selection and validation
Statistical analysis
Results
Selection and validation of IVs
SNP | Chr | A1 | A2 | SE | Beta | MAF | F-statistics | Nearby gene | P-value |
---|---|---|---|---|---|---|---|---|---|
rs2803296 | 1 | C | G | 0.001 | -0.009 | 0.544 | 33 | CALML6 | 7.30E-09 |
rs12049261 | 1 | C | G | 0.002 | 0.011 | 0.293 | 47 | RP11-478L17.1 | 6.80E-12 |
rs6690017 | 1 | G | T | 0.002 | -0.010 | 0.409 | 46 | DAB1 | 1.10E-11 |
rs2644128 | 1 | G | C | 0.001 | 0.011 | 0.548 | 51 | NAV1 | 1.00E-12 |
rs4572538 | 2 | T | C | 0.002 | -0.010 | 0.364 | 38 | PABPC1P2 | 7.70E-10 |
rs56365214 | 2 | A | C | 0.002 | -0.015 | 0.156 | 52 | LINC01122 | 5.60E-13 |
rs4577309 | 2 | G | A | 0.001 | -0.009 | 0.534 | 33 | MFSD6 | 1.00E-08 |
rs12470989 | 2 | G | A | 0.002 | -0.010 | 0.204 | 31 | MAIP1 | 2.80E-08 |
rs113851554 | 2 | T | G | 0.003 | 0.047 | 0.057 | 199 | MEIS1 | 2.90E-45 |
rs56093896 | 2 | A | C | 0.002 | -0.012 | 0.214 | 47 | IGKV1OR2-108 | 7.70E-12 |
rs2014830 | 3 | T | C | 0.002 | -0.012 | 0.304 | 51 | SEMA3F-AS1 | 8.90E-13 |
rs705219 | 3 | A | T | 0.002 | 0.013 | 0.887 | 33 | RP11-384F7.2 | 1.20E-08 |
rs9845387 | 3 | A | C | 0.004 | -0.022 | 0.040 | 33 | LSAMP | 7.10E-09 |
rs1988337 | 4 | G | A | 0.001 | 0.008 | 0.552 | 31 | CCSER1 | 2.10E-08 |
rs11097861 | 4 | G | A | 0.002 | 0.010 | 0.716 | 37 | RP11-729M20.1 | 1.10E-09 |
rs2604551 | 4 | G | T | 0.002 | -0.008 | 0.640 | 30 | RP11-665G4.1 | 4.70E-08 |
rs1592757 | 5 | C | G | 0.002 | 0.010 | 0.356 | 43 | RP11-6N13.1 | 4.30E-11 |
rs7711696 | 5 | T | G | 0.002 | 0.011 | 0.305 | 48 | SMAD5 | 4.10E-12 |
rs1430205 | 5 | T | C | 0.001 | 0.009 | 0.462 | 40 | TMEM161B-AS1 | 2.10E-10 |
rs314280 | 6 | G | A | 0.001 | 0.010 | 0.547 | 42 | LIN28B | 7.30E-11 |
rs6975972 | 7 | G | A | 0.002 | -0.009 | 0.579 | 36 | C7orf50 | 2.00E-09 |
rs8180817 | 7 | C | G | 0.002 | -0.010 | 0.431 | 44 | FOXP2 | 2.70E-11 |
rs17151854 | 8 | T | G | 0.002 | 0.013 | 0.152 | 39 | MSRA | 3.80E-10 |
rs11790060 | 9 | C | T | 0.002 | -0.010 | 0.331 | 43 | RP11-165J3.6 | 5.80E-11 |
rs224032 | 10 | A | G | 0.001 | 0.008 | 0.550 | 32 | ALDH7A1P4 | 1.80E-08 |
rs17709610 | 10 | G | A | 0.002 | -0.010 | 0.298 | 37 | ACTR1A | 9.50E-10 |
rs2297787 | 10 | A | T | 0.003 | -0.018 | 0.080 | 42 | CNNM2 | 9.60E-11 |
rs72924721 | 11 | T | C | 0.003 | 0.016 | 0.073 | 33 | CFL1 | 1.10E-08 |
rs10838708 | 11 | A | G | 0.002 | -0.009 | 0.459 | 40 | PSMC3 | 2.90E-10 |
rs68094047 | 12 | T | C | 0.002 | 0.010 | 0.251 | 36 | MYO1H | 1.70E-09 |
rs931221 | 12 | A | T | 0.002 | 0.011 | 0.237 | 37 | RP11-788H18.1 | 1.30E-09 |
rs324017 | 12 | C | A | 0.002 | -0.010 | 0.705 | 37 | NAB2 | 1.40E-09 |
rs9570080 | 13 | C | T | 0.002 | -0.011 | 0.344 | 45 | RPP40P2 | 1.60E-11 |
rs6561715 | 13 | A | T | 0.002 | -0.012 | 0.631 | 57 | RP11-384G23.1 | 4.80E-14 |
rs1547630 | 13 | A | G | 0.002 | 0.009 | 0.652 | 34 | SNORD44 | 5.80E-09 |
rs4886860 | 15 | C | G | 0.002 | -0.012 | 0.767 | 45 | PML | 1.80E-11 |
rs11635495 | 15 | C | T | 0.001 | 0.009 | 0.512 | 40 | IQCH-AS1 | 2.80E-10 |
rs2062113 | 16 | C | T | 0.002 | -0.010 | 0.568 | 41 | AC040163.1 | 1.60E-10 |
rs9894577 | 17 | A | G | 0.002 | 0.013 | 0.318 | 68 | HEXIM1 | 1.30E-16 |
rs9906181 | 17 | G | A | 0.002 | -0.009 | 0.688 | 31 | KCNJ12 | 2.40E-08 |
rs11152363 | 18 | A | G | 0.002 | 0.016 | 0.186 | 66 | TCF4 | 4.50E-16 |
rs56330606 | 19 | G | A | 0.002 | 0.009 | 0.379 | 37 | ZNF585B | 1.20E-09 |
MR sensitivity analysis
Outcome | Weighted Median | MR-Egger | Heterogeneity | Pleiotropy | ||||
---|---|---|---|---|---|---|---|---|
OR (95%CI) | P | OR (95%CI) | P | Q | P | Intercept | P | |
Ulcer of esophagus | 1.011 (1.002–1.020) | 0.017 | 1.011 (0.967–1.058) | 0.623 | 41.84 | 0.167 | -6.95E-06 | 0.977 |
Duodenal ulcer | 1.004 (0.998–1.011) | 0.203 | 0.994 (0.959–1.030) | 0.740 | 26.64 | 0.690 | 1.29E-04 | 0.490 |
Gastric ulcer | 1.006 (0.997–1.014) | 0.201 | 0.996 (0.955–1.039) | 0.865 | 36.15 | 0.368 | 1.20E-04 | 0.594 |
Ulcerative colitis | 1.000 (0.992–1.007) | 0.954 | 0.997 (0.962–1.033) | 0.877 | 30.97 | 0.519 | 4.85E-05 | 0.798 |
Crohn’s disease | 0.999 (0.992–1.007) | 0.888 | 1.014 (0.965–1.066) | 0.584 | 28.55 | 0.237 | 1.30E-04 | 0.618 |
Colitis | 1.004 (0.997–1.010) | 0.266 | 1.026 (0.986–1.067) | 0.220 | 22.42 | 0.495 | 2.16E-04 | 0.286 |
Polyp of stomach and duodenum | 1.005 (0.999–1.011) | 0.117 | 1.020 (0.981–1.060) | 0.331 | 21.16 | 0.629 | 1.68E-04 | 0.403 |
Polyp of colon | 1.000 (0.992–1.007) | 0.952 | 0.983 (0.947–1.020) | 0.366 | 36.63 | 0.304 | 2.11E-04 | 0.293 |
Rectal polyp | 1.005 (0.998–1.012) | 0.203 | 0.973 (0.932–1.015) | 0.214 | 30.82 | 0.425 | 3.33E-04 | 0.139 |
Haemorrhoidal disease | 1.317 (1.071–1.619) | 0.009 | 1.141 (0.568–2.294) | 0.713 | 108.53 | 1.04E-08 | 1.00E-03 | 0.805 |
Outcome | Weighted Median | MR-Egger | Heterogeneity | Pleiotropy | ||||
---|---|---|---|---|---|---|---|---|
EE (95%CI) | P | EE (95%CI) | P | Q | P | Intercept | P | |
Nausea and vomiting | 1.007 (0.995–1.019) | 0.234 | 1.007 (0.979–1.035) | 0.653 | 43.21 | 0.223 | 1.09E-05 | 0.947 |
GI-bleeding | 1.639 (0.639–4.204) | 0.304 | 1.561 (0.237–10.290) | 0.646 | 27.99 | 0.857 | -1.19E-03 | 0.915 |
Abdominal pain | 1.009 (0.993–1.025) | 0.274 | 1.006 (0.973–1.040) | 0.717 | 37.49 | 0.493 | 1.15E-04 | 0.553 |
Change in bowel habit | 1.000 (0.993–1.007) | 0.998 | 1.006 (0.971–1.043) | 0.731 | 28.20 | 0.705 | -8.57E-05 | 0.651 |
C-reactive protein level | 1.109 (0.789–1.559) | 0.552 | 1.103 (0.109–11.179) | 0.935 | 43.96 | 6.01E-05 | -2.72E-03 | 0.826 |
Neutrophil cell count | 0.962 (0.859–1.076) | 0.496 | 1.165 (0.743–1.826) | 0.512 | 169.74 | 2.56E-20 | -3.09E-03 | 0.250 |
Lymphocyte cell count | 0.892 (0.797–0.999) | 0.047 | 0.853 (0.506–1.437) | 0.554 | 215.17 | 1.32E-28 | 7.92E-04 | 0.797 |
Eosinophill percentage | 1.112 (0.986–1.253) | 0.084 | 0.910 (0.561–1.475) | 0.704 | 152.87 | 1.03E-15 | 1.57E-03 | 0.577 |
Basophil percentage | 0.895 (0.792–1.011) | 0.075 | 0.722 (0.507–1.027) | 0.078 | 84.24 | 2.36E-05 | 2.85E-03 | 0.170 |
Monocyte percentage | 1.048 (0.936–1.173) | 0.418 | 0.909 (0.640–1.293) | 0.600 | 86.81 | 6.99E-06 | 2.82E-03 | 0.175 |