Background
Methods
Animals
Microarrays
Bioinformatics
Quantitative PCR
Results
Differential gene expression in cerebellum and hippocampus of En2-/- mice
Functional analysis
(a) Cerebellum | |||
---|---|---|---|
Gene Symbol | Gene Name | P value | Fold change |
Ada
| adenosine deaminase | 3.50E-03 | 1.705 |
Ahi1
| Abelson helper integration site 1 | 4.70E-03 | 1.690 |
Cacna1g
| calcium channel, voltage-dependent, T type, alpha 1G subunit | 8.20E-03 | 0.670 |
Cdh10
| cadherin 10 | 4.40E-03 | 1.662 |
Eml1
| echinoderm microtubule associated protein like 1 | 2.80E-03 | 0.581 |
Erbb4
| v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) | 9.90E-03 | 0.653 |
Glo1
| glyoxalase 1 | 6.00E-03 | 0.625 |
Gnas
| GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus | 5.60E-03 | 1.565 |
Grm5
| glutamate receptor, metabotropic 5 | 3.70E-03 | 1.656 |
Itgb7
| integrin beta 7 | 1.00E-04 | 0.453 |
Kdm5c
| lysine (K)-specific demethylase 5C | 8.50E-03 | 0.660 |
Kit
| kit oncogene | 3.00E-03 | 0.591 |
Nrp2
| neuropilin 2 | 0.00 | 2.503 |
Nrxn3
| neurexin III | 1.80E-03 | 1.843 |
Park2
| Parkinson disease (autosomal recessive, juvenile) 2, parkin | 5.20E-03 | 1.723 |
Pinx1
| PIN2/TERF1 interacting, telomerase inhibitor 1 | 1.00E-03 | 1.871 |
Plcb1
| phospholipase C, beta 1 | 3.60E-03 | 1.677 |
Rb1cc1
| RB1-inducible coiled-coil 1 | 6.90E-03 | 1.635 |
Rpp25
| ribonuclease P 25 subunit (human) | 8.00E-03 | 0.619 |
Stk39
| serine/threonine kinase 39, STE20/SPS1 homolog (yeast) | 9.40E-03 | 1.548 |
Th
| tyrosine hydroxylase | 7.90E-03 | 1.564 |
(b) Hippocampus
| |||
Gene Symbol
|
Gene Name
|
P
value
|
Fold change
|
Aff4
| AF4/FMR2 family, member 4 | 1.30E-03 | 4.490 |
Atp2b2
| ATPase, Ca++ transporting, plasma membrane 2 | 2.80E-03 | 0.544 |
Baiap2
| brain-specific angiogenesis inhibitor 1-associated protein 2 | 8.00E-04 | 0.478 |
Camta1
| calmodulin binding transcription activator 1 | 4.40E-03 | 0.561 |
Dab1
| disabled homolog 1 (Drosophila) | 4.10E-03 | 0.552 |
Dctn5
| dynactin 5 | 4.10E-03 | 1.733 |
Dlg4
| discs, large homolog 4 (Drosophila) | 0.00 | 0.346 |
Egr2
| early growth response 2 | 7.00E-04 | 2.099 |
Eif4ebp2
| eukaryotic translation initiation factor 4E binding protein 2 | 3.90E-03 | 0.551 |
Ep400
| E1A binding protein p400 | 2.00E-04 | 2.361 |
Foxp1
| forkhead box P1 | 3.00E-04 | 0.425 |
Gabra4
| gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 | 4.00E-04 | 2.151 |
Gnas
| GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus | 3.90E-03 | 0.555 |
Gsk3b
| glycogen synthase kinase 3 beta | 3.50E-03 | 0.541 |
Gtf2i
| general transcription factor II I | 3.80E-03 | 0.552 |
Kit
| kit oncogene | 2.00E-04 | 0.417 |
Klc2
| kinesin light chain 2 | 4.80E-03 | 0.565 |
Lrrc1
| leucine rich repeat containing 1 | 4.20E-03 | 1.742 |
Nrcam
| neuron-glia-CAM-related cell adhesion molecule | 3.10E-03 | 1.777 |
Ntng1
| netrin G1 | 1.90E-03 | 1.842 |
Ntrk3
| neurotrophic tyrosine kinase, receptor, type 3 | 1.00E-04 | 0.426 |
Park2
| Parkinson disease (autosomal recessive, juvenile) 2, parkin | 1.00E-04 | 2.402 |
Plcb1
| phospholipase C, beta 1 | 8.00E-04 | 0.487 |
Prkcb
| protein kinase C, beta | 8.00E-04 | 0.490 |
Rpp25
| ribonuclease P 25 subunit (human) | 1.10E-03 | 0.487 |
Sbf1
| SET binding factor 1 | 4.40E-03 | 0.562 |
Scn1a
| sodium channel, voltage-gated, type I, alpha | 1.00E-04 | 0.410 |
Scn8a
| sodium channel, voltage-gated, type VIII, alpha | 1.00E-04 | 0.414 |
Syn1
| synapsin I | 5.00E-04 | 0.469 |
Syne1
| synaptic nuclear envelope 1 | 4.80E-03 | 0.562 |
Thra
| thyroid hormone receptor alpha | 1.00E-04 | 0.419 |
Ube2h
| ubiquitin-conjugating enzyme E2H | 4.00E-03 | 0.559 |
Ubl7
| ubiquitin-like 7 (bone marrow stromal cell-derived) | 3.70E-03 | 0.557 |
Cerebellum | # SFARI genes | % enrichment | P value | Gene names |
---|---|---|---|---|
This study (3 En2
-/-
, 3 WT) | 21 | 2.79% | 4.98E-01 |
Ada,
Ahi1
,
Cacna1g
, Cdh10, Eml1, Erbb4, Glo1, Gnas, Grm5, Itgb7, Kdm5c, Kit, Nrp2, Nrxn3, Park2, Pinx1, Plcb1, Rb1cc1, Rpp25, Stk39, Th
|
16 | 4.75% | 3.43E-02 (*) |
AHI1
, ANK3,
CACNA1G
, CBS,
EN2
, EPHB6, FAT1, FOXP1,GAP43, GRIN2A, HSD11B1, NLGN3, NTNG1, RAB11FIP5, SLC30A5, UBE3A
| |
1 | 3.33% | 5.85E-01 |
CNR1
| |
Limbic regions
|
# SFARI genes
|
% enrichment
|
P
value
|
Gene names
|
This study (3 En2
-/-
, 3 WT) | 33 | 4.24% | 2.65E-02 (*) |
Aff4,
Atp2b2
, Baiap2, Camta1, Dab1, Dctn5, Dlg4, Egr2,
Eif4ebp2
, Ep400, Foxp1, Gabra4, Gnas, Gsk3b, Gtf2i, Kit, Klc2, Lrrc1, Nrcam, Ntng1,
Ntrk3
, Park2, Plcb1,
Prkcb
,
Rpp25
, Sbf1, Scn1a, Scn8a, Syn1, Syne1, Thra,
Ube2h
, Ubl7
|
36 | 3.70% | 1.04E-01 |
AHI1
, APBA2,
ATP2B2
, ATRNL1, AUTS2, BCL2, BTAF1, CADM1, CD99L2, DNM1L, DPP10,
EIF4EBP2
, FAT1, GRIN2A, ICA1, MAOA,
MSN
,
NTRK3
, PCDH9, PPFIA1,
PRKCB
, PTCHD1, RAB11FIP5, RGS7,
RPP25
, SLC16A3, SLC25A12,
SLC9A9,
STXBP1, SYT17, TOMM20, TSC2, TUBGCP5,
UBE2H
, UBR5, UPF3B
| |
4 | 3.05% | 5.52E-01 |
AHI1
,
MSN
, SDC2,
SLC9A9
|