Evidence for long noncoding RNA GAS5 up-regulationin patients with Klinefelter syndrome

Klinefelter syndrome (KS) is the most common sex-chromosome disorder in men, with an estimated prevalence of 1:660 newborns [1, 2]. The most common karyotype is the classic 47,XXY one, which accounts for the 80–90% of all cases [3]. It is a consequence of a non-disjunction of paired X-chromosomes during the first or second meiotic division [3], equally due to a paternal or maternal meiotic mal segregation event [4]. The remaining 10% of KS are due to chromosome mosaicisms (e.g. 46,XY/47,XXY) or to more complex karyotypes (X chromosome structural abnormalities such as 47,XX, der(Y), 47,X, der(X),Y, or other numeric sex chromosome abnormalities such as 48, XXXY, 48, XXYY and 49, XXXXY) [3, 5].

The chromosomal abnormality leads to a progressive germ cell degeneration starting from mid-puberty, impaired Sertoli cell function [6], total tubular atrophy or hyalinizing fibrosis and Leydig cell hyperplasia [7], clinically causing hypergonadotropic hypogonadism [8], small testis with increased consistency and infertility. Occasionally, foci of spermatogenesis have been observed in testis of KS patients [7]. Clinically, azoospermia is present in the 90% of non-mosaic KS, whereas severe oligozoospermia in the remaining 10% [7].

Several clinical manifestations associate with the syndrome. These include learning and language disability, reduction in intelligence quotient (IQ) scores of 10 to 15 points, but not into the intellectual disability range [6], increased risk for mitral valve prolapse, lower-extremity varicose veins, venous stasis ulcers, deep vein thrombosis and pulmonary embolism, autoimmune diseases, 20-fold-higher risk of developing breast cancer, type II diabetes mellitus (T2 DM) and metabolic syndrome [9], osteoporosis [10], extragonadal germ cell tumors and non-Hodgkin lymphoma [11, 12].

Molecular mechanisms underlying the variability in KS phenotype have not been clearly understood yet. Epigenetic mechanisms have been suggested to play a role [13]. Growth arrest-specific 5 (GAS5) gene, mapping on the 1q25.1 chromosome, encodes for a long non-coding RNA (lncRNA) which is involved in the modulation of gene expression, targeting many different downstream miRNAs [14, 15].

LncRNA GAS5 was initially identified as a tumor suppressor gene [16‐21]. However, it has also been shown to support female germline stem cell (FGSC) survival [22] and adipocyte differentiation [15]. In addition, recent evidence pointed to lncRNA GAS5 a role in atherosclerosis [23] and autoimmune diseases [24], which are widely recognized as KS comorbidities.

No study evaluated the lncRNA GAS5 expression profile in KS patients so far. On this account, the present study was undertaken to investigate differently expressed genes and, specifically, lncRNA GAS5 expression in patients with KS and controls.

The present study belongs to a broad project investigating transcriptome differences between patients with KS and normal control subjects (NC). To accomplish this, 10 patients with non-mosaic KS and 10 healthy controls of similar age were selected. All men with KS (mean age 32.5) had 47,XXY karyotype, as confirmed by cytogenetic investigation performed on at least 50 metaphases. NC (mean age 32) had negative history of genetic diseases, normal testis volume and normal reproductive hormones (LH, FSH, total testosterone) levels. All men enrolled in this study (KS patients and controls) were Italians.

They underwent to transcriptome and qRT-PCR analysis which were performed on peripheral blood mononuclear cells (PBMCs) isolated with ficoll gradient.

Clinical features and biochemical data of KS patients and controls have been reported elsewhere [13, 25]. Differential expression analysis showed 4448 genes differentially expressed with |fold-change| ≥2 and p-adj ≤ 0.05 comparing KS patients versus the 10 controls. Among these, 2698 were down-regulated and 1750 were up-regulated and Ingenuity Pathway Analysis (IPA) highlighted their involvement in several biological functions, including cellular growth and proliferation, cellular development and cell-to-cell signaling and interaction, where the transcription of GAS5 (locus 1:173832385–173,872,687) was up-regulated in the patients with KS by 5.171-fold (q-value< 0.0001) (Fig. 1).

Distribution of expression values was normal in both KS patients and NC (p > 0.01). Therefore, we carried out a statistical inferential analysis using the parametric test paired two tailed t-test. Data acquired from this analysis revealed a significant increase of GAS5mRNA levels in KS patients compared to relative controls (p < 0.01), as shown in Fig. 2. In addition, we investigated the expression of the two groups by evaluating the relative expression value in terms of -ΔCt (Fig. 3). In this analysis, the mean expression of NC was 6.53 (value range 6.31–6.8; SD = 0.2; CV = 0.02; IC 95% 6.21–6.85), whereas the mean expression of the KS subjects was 7.28 (value range 6.55–8.28; SD = 0.65; CV = 0.085; IC 95% 6.81–7.75). Inferential statistical analysis reveals significant difference between two means expression value (p < 0.05). Linear regression analysis reveals no significant correlation between GAS5 mRNA levels and age of subjects involved in our study (p > 0.05).

Table 1 shows the main NGS findings validated by qRT-PCR presented so far that belong to the same project [13, 25]. The results confirm the data obtained by the NGS analysis and differences in values reflect the diversity of methods.

Finally, fitting with the suppressing role of lncRNA GAS5 on IGF1R expression [31], our NGS data show that the IGF1R gene is down-regulated in KS subjects (FC = − 1.873 and p-adj = 0.000126) compared to normal subjects.

We recently reported a decreased miRNAs and mitochondrial subunits expression in KS patients compared to controls [13, 25]. In the present study, we showed, for the first time, the occurrence of a higher lncRNA GAS5 expression in patients with KS compared to controls.

LncRNA GAS5 is involved in several biologic processes, including glucocorticoid (GC) actions, inflammatory and autoimmune diseases, vascular endothelial cells apoptosis and atherosclerosis, FGSC proliferation.

LncRNA GAS5 could directly interact with the DNA binding domain of the glucocorticoid receptor (GR) [32]. This prevents receptor binding to the GC responsive element (GRE) in target genes, blocking their transcription [32]. Because of its competition with GRE, lncRNA GAS5 is considered to act as a repressor of the GR action [33]. Accordingly, poor responders to GCs showed higher lncRNA GAS5 levels compared to normal ones [34]. GCs have a regulatory action on the immune system and are employed in inflammatory and autoimmune diseases. Altered lncRNA GAS5 levels in whole blood or leucocytes of patients with rheumatoid arthritis, systemic lupus erythematosus, multiple sclerosis, sarcoidosis, osteoarthritis and inflammatory bowel disease have already been reported [24, 35, 36], thus suggesting that lncRNA GAS5 may play a role in the pathogenesis of inflammatory and autoimmune diseases (probably modulating responsiveness to endogenous GCs), which are more frequent in KS patients.

LncRNA GAS5 expression is involved in atherogenesis. Its expression is significantly higher in plaques of atherosclerosis both from human and from animal models. Its over-expression enhances vascular endothelial cells apoptosis after lipoperoxidation. Therefore, lncRNA GAS5 has been suggested as a target for the therapy of atherosclerosis [23]. KS patients have an increased risk of atherogenesis, due to hypogonadism and metabolic syndrome [37]. Since the aforementioned evidence, a role for lncRNA GAS5 in atherogenesis in KS patients cannot be excluded.

Due to the involvement of lncGAS5 in several biological functions required for normal spermatogenesis, such as cellular growth and proliferation, cellular development and cell-to-cell signaling and interaction (Fig. 1), we speculate that lncGAS5 deregulation may play a role in germ cell loss in KS patients.

Very recently, lncRNA GAS5 has been regarded as a promoter of proliferation and survival of FGSC [22]. In greater detail, it has been found highly expressed in FGSCs and oocytes from neonatal mice and to facilitate cultured FGSC survival through the inhibition of their apoptosis in-vitro [22]. No study explored lncRNA GAS5 expression in male germ cells so far. This knowledge may help to understand its role, if any, in germ cell loss in KS patients. Indeed, lncRNA GAS5 has been shown to down-regulate the IGF1R expression [31]. Accordingly, we found that IGF1R expression was down-regulated in KS patients compared to controls. Growing evidence addressed to IGF1R a role in human testicular function [38] and in Sertoli cell proliferation and function [39]. Indeed, its knock-out (both the single one and in combination with the Insr) in Sertoli cells from mice affected the final testicular size, Sertoli cell number and the sperm output [40]. Therefore, a down-regulation of IGF1R in Sertoli cells might hypothetically explain germ cell loss in KS patients.

Finally, apoptosis is a mechanism responsible for the normal regulation of germ-cell death during differentiation and maturation of normal human germ cells. It is a prerequisite for a normal spermatogenesis [41, 42]. Therefore, apoptosis may contribute to the excessive germ-cell demise in KS patients. According with Koldemir and colleagues (2017), GAS5 accumulation in exosomes during apoptotic induction promotes two different mechanisms, microtubule stabilization and DNA strand breaks [43]. Therefore, it is plausible to hypothesize that GAS5 is involved in communication of cells upon cell death-promoting signals.

In conclusion, the results of this study showed a significant over-expression of lncRNA GAS5 in patients with non-mosaic KS compared to controls. The lncRNA seems to play a role in various biologic processes, such as GC actions, inflammatory and autoimmune diseases, vascular endothelial cells apoptosis and atherosclerosis and in FGSC proliferation. Furthermore, its involvement in cellular growth and proliferation, cellular development and cell-to-cell signaling and interaction suggests a possible role in germ cell loss. However, whether the lncRNA GAS5 over-expression is really involved in the pathogenesis of some of the typical features of KS patients (particularly in inflammatory and autoimmune diseases, atherogenesis and germ cell loss) needs to be further investigated.