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Erschienen in: Archives of Virology 6/2020

03.04.2020 | Annotated Sequence Record

Molecular characterization of a novel cytorhabdovirus with a unique genomic organization infecting yerba mate (Ilex paraguariensis) in Argentina

verfasst von: Nicolás Bejerman, Raúl Maximiliano Acevedo, Soledad de Breuil, Oscar A. Ruiz, Pedro Sansberro, Ralf G. Dietzgen, Claudia Nome, Humberto Debat

Erschienen in: Archives of Virology | Ausgabe 6/2020

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Abstract

The genome of a novel rhabdovirus was detected in yerba mate (Ilex paraguariensis St. Hil.). The newly identified virus, tentatively named "yerba mate virus A" (YmVA), has a genome of 14,961 nucleotides. Notably, eight open reading frames were identified in the antigenomic orientation of the negative-sense, single-stranded viral RNA, including two novel accessory genes, in the order 3′-N-P-3-4-M-G-L-8-5′. Sequence comparisons of the encoded proteins as well as phylogenetic analysis suggest that YmVA is a new member of the genus Cytorhabdovirus, family Rhabdoviridae. YmVA's unique genomic organization and phylogenetic relationships indicate that this virus likely represents a distinct evolutionary lineage among the cytorhabdoviruses.
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Literatur
2.
Zurück zum Zitat Debat HJ, Grabiele M, Aguilera PM, Bubillo R, Zapata PD, Marti DA, Ducasse DA (2014) The complete genome of a putative endornavirus identified in yerba mate (Ilex paraguariensis St. Hil.). Virus Genes 49:348–350CrossRef Debat HJ, Grabiele M, Aguilera PM, Bubillo R, Zapata PD, Marti DA, Ducasse DA (2014) The complete genome of a putative endornavirus identified in yerba mate (Ilex paraguariensis St. Hil.). Virus Genes 49:348–350CrossRef
3.
Zurück zum Zitat Bejerman N, de Breuil S, Debat H, Miretti M, Badaracco A, Nome C (2017) Molecular characterization of yerba mate chlorosis-associated virus, a putative cytorhabdovirus infecting yerba mate (Ilex paraguariensis). Arch Virol 162:2481–2484CrossRef Bejerman N, de Breuil S, Debat H, Miretti M, Badaracco A, Nome C (2017) Molecular characterization of yerba mate chlorosis-associated virus, a putative cytorhabdovirus infecting yerba mate (Ilex paraguariensis). Arch Virol 162:2481–2484CrossRef
4.
Zurück zum Zitat Bejerman N, de Breuil S, Nome C (2018) Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina. Arch Virol 163:2811–2815CrossRef Bejerman N, de Breuil S, Nome C (2018) Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina. Arch Virol 163:2811–2815CrossRef
5.
Zurück zum Zitat Walker PJ, Blasdell KR, Calisher CH et al (2018) ICTV virus taxonomy profile: Rhabdoviridae. J Gen Virol 99:447–448CrossRef Walker PJ, Blasdell KR, Calisher CH et al (2018) ICTV virus taxonomy profile: Rhabdoviridae. J Gen Virol 99:447–448CrossRef
6.
Zurück zum Zitat Acevedo RM, Avico EH, Gonzalez S, Rodrigues Salvador A, Rivarola M et al (2019) Transcript and metabolic adjustments triggered by drought in Ilex paraguariensis leaves. Planta 250:445–462CrossRef Acevedo RM, Avico EH, Gonzalez S, Rodrigues Salvador A, Rivarola M et al (2019) Transcript and metabolic adjustments triggered by drought in Ilex paraguariensis leaves. Planta 250:445–462CrossRef
7.
Zurück zum Zitat Debat HJ, Bejerman N (2019) Novel bird’s-foot trefoil RNA viruses provide insights into a clade of legume-associated enamoviruses and rhabdoviruses. Arch Virol 164:1419–1426CrossRef Debat HJ, Bejerman N (2019) Novel bird’s-foot trefoil RNA viruses provide insights into a clade of legume-associated enamoviruses and rhabdoviruses. Arch Virol 164:1419–1426CrossRef
8.
Zurück zum Zitat Sadeghi MS, Afsharifar A, Izadpanah K, Loconsole G, De Stradis A, Martelli GP, Saponari M (2016) Isolation and partial characterization of a novel cytorhabdovirus from citrus trees showing foliar symptoms in Iran. Plant Dis 100:66–71CrossRef Sadeghi MS, Afsharifar A, Izadpanah K, Loconsole G, De Stradis A, Martelli GP, Saponari M (2016) Isolation and partial characterization of a novel cytorhabdovirus from citrus trees showing foliar symptoms in Iran. Plant Dis 100:66–71CrossRef
9.
Zurück zum Zitat Dietzgen RG, Kondo H, Goodin M, Kurath G, Vasilakis N (2017) The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins. Virus Res 227:158–170CrossRef Dietzgen RG, Kondo H, Goodin M, Kurath G, Vasilakis N (2017) The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins. Virus Res 227:158–170CrossRef
10.
Zurück zum Zitat Walker PJ, Dietzgen RG, Joubert DA, Blasdell KR (2011) Rhabdovirus accessory genes. Virus Res 162:110–125CrossRef Walker PJ, Dietzgen RG, Joubert DA, Blasdell KR (2011) Rhabdovirus accessory genes. Virus Res 162:110–125CrossRef
11.
Zurück zum Zitat Walker PJ, Firth C, Widen SG et al (2015) Evolution of genome size and complexity in the Rhabdoviridae. PLoS Pathog 11:e1004664CrossRef Walker PJ, Firth C, Widen SG et al (2015) Evolution of genome size and complexity in the Rhabdoviridae. PLoS Pathog 11:e1004664CrossRef
12.
Zurück zum Zitat Tsai CW, Redinbaugh MG, Willie KJ, Reed S, Goodin M, Hogenhout SA (2005) Complete genome sequence and in planta subcellular localization of maize fine streak virus proteins. J Virol 79:5304–5314CrossRef Tsai CW, Redinbaugh MG, Willie KJ, Reed S, Goodin M, Hogenhout SA (2005) Complete genome sequence and in planta subcellular localization of maize fine streak virus proteins. J Virol 79:5304–5314CrossRef
13.
Zurück zum Zitat Yan T, Zhu JR, Di D, Gao Q, Zhang Y, Zhang A, Yan C, Miao H, Wang XB (2015) Characterization of the complete genome of barley yellow striate mosaic virus reveals a nested gene encoding a small hydrophobic protein. Virology 478:112–122CrossRef Yan T, Zhu JR, Di D, Gao Q, Zhang Y, Zhang A, Yan C, Miao H, Wang XB (2015) Characterization of the complete genome of barley yellow striate mosaic virus reveals a nested gene encoding a small hydrophobic protein. Virology 478:112–122CrossRef
14.
Zurück zum Zitat Bejerman N, Giolitti F, deBreuil S, Trucco V, Nome C, Lenardon S, Dietzgen R (2015) Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses. Virology 483:275–283CrossRef Bejerman N, Giolitti F, deBreuil S, Trucco V, Nome C, Lenardon S, Dietzgen R (2015) Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses. Virology 483:275–283CrossRef
15.
Zurück zum Zitat Dietzgen R, Callaghan B, Wetzel T, Dale JL (2006) Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res 118:16–22CrossRef Dietzgen R, Callaghan B, Wetzel T, Dale JL (2006) Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res 118:16–22CrossRef
16.
Zurück zum Zitat Yang X, Huang JL, Liu CH, Chen B, Zhang T, Zhou GH (2017) Rice stripe mosaic virus, a novel cytorhabdovirus infecting rice via leafhopper transmission. Front Microbiol 7:2140CrossRef Yang X, Huang JL, Liu CH, Chen B, Zhang T, Zhou GH (2017) Rice stripe mosaic virus, a novel cytorhabdovirus infecting rice via leafhopper transmission. Front Microbiol 7:2140CrossRef
17.
Zurück zum Zitat Ding X, Chen D, Du Z, Zhang J, Wu Z (2019) The complete genome sequence of a novel cytorhabdovirus identified in strawberry (Fragaria ananassa Duch.). Arch Virol 164:3127–3131CrossRef Ding X, Chen D, Du Z, Zhang J, Wu Z (2019) The complete genome sequence of a novel cytorhabdovirus identified in strawberry (Fragaria ananassa Duch.). Arch Virol 164:3127–3131CrossRef
18.
Zurück zum Zitat Baek D, Lim S, Ju H, Kim H, Lee S, Moon J (2019) The complete sequence of a novel nucleorhabdovirus (apple rootstock virus A) identified in apple rootstock. Arch Virol 164:2641–2644CrossRef Baek D, Lim S, Ju H, Kim H, Lee S, Moon J (2019) The complete sequence of a novel nucleorhabdovirus (apple rootstock virus A) identified in apple rootstock. Arch Virol 164:2641–2644CrossRef
19.
Zurück zum Zitat Gaafar Y, Richert-Poggeler K, MaaB C, Vetten H, Ziebell H (2019) Characterisation of a novel nucleorhabdovirus infecting alfalfa (Medicago sativa). Virol J 16:55CrossRef Gaafar Y, Richert-Poggeler K, MaaB C, Vetten H, Ziebell H (2019) Characterisation of a novel nucleorhabdovirus infecting alfalfa (Medicago sativa). Virol J 16:55CrossRef
Metadaten
Titel
Molecular characterization of a novel cytorhabdovirus with a unique genomic organization infecting yerba mate (Ilex paraguariensis) in Argentina
verfasst von
Nicolás Bejerman
Raúl Maximiliano Acevedo
Soledad de Breuil
Oscar A. Ruiz
Pedro Sansberro
Ralf G. Dietzgen
Claudia Nome
Humberto Debat
Publikationsdatum
03.04.2020
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 6/2020
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-020-04609-3

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