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Erschienen in: Archives of Virology 12/2014

01.12.2014 | Brief Report

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams

verfasst von: Isabelle Acina Mambole, Lydiane Bonheur, Laurence Svanella Dumas, Denis Filloux, Rose-Marie Gomez, Chantal Faure, David Lange, Fabiola Anzala, Claudie Pavis, Armelle Marais, Philippe Roumagnac, Thierry Candresse, Pierre-Yves Teycheney

Erschienen in: Archives of Virology | Ausgabe 12/2014

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Abstract

The genome of yam virus X (YVX), a new member of the genus Potexvirus from yam (Dioscorea trifida), was completely sequenced. Structural and phylogenetic analysis showed that the closest relative of YVX is nerine virus X. A prevalence study found YVX only in plants maintained in Guadeloupe and showed that it also infects members of the complex D. cayenensis rotundata. This study provides evidence for the existence of two additional potexviruses, one of which infects D. nummularia in Vanuatu and the other, D. bulbifera and D. rotundata in Haiti and D. trifida and D. rotundata in Guadeloupe. This work also shows that existing potexvirus-specific degenerate primers targeting the ORF1-encoded polymerase domain are well suited for the identification of the three potexviruses reported here.
Literatur
1.
Zurück zum Zitat Adams MJ, Antoniw JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060PubMed Adams MJ, Antoniw JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060PubMed
2.
Zurück zum Zitat Beck DL, Guilford PJ, Voot DM, Andersen MT, Forster RLS (1991) Triple gene block proteins of white clover mosaic virus are required for transport. Virology 183:695–702PubMedCrossRef Beck DL, Guilford PJ, Voot DM, Andersen MT, Forster RLS (1991) Triple gene block proteins of white clover mosaic virus are required for transport. Virology 183:695–702PubMedCrossRef
3.
Zurück zum Zitat Dolja VV, Boyko VP, Agranovsky AA, Koonin EV (1991) Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184:79–86PubMedCrossRef Dolja VV, Boyko VP, Agranovsky AA, Koonin EV (1991) Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184:79–86PubMedCrossRef
5.
Zurück zum Zitat Foissac X, Svanella-Dumas L, Gentit P, Dulucq MJ, Marais A, Candresse T (2005) Polyvalent degenerate oligonucleotides reverse transcription-polymerase chain reaction: a polyvalent detection and characterization tool for trichoviruses, capilloviruses, and foveaviruses. Phytopathology 95:617–625PubMedCrossRef Foissac X, Svanella-Dumas L, Gentit P, Dulucq MJ, Marais A, Candresse T (2005) Polyvalent degenerate oligonucleotides reverse transcription-polymerase chain reaction: a polyvalent detection and characterization tool for trichoviruses, capilloviruses, and foveaviruses. Phytopathology 95:617–625PubMedCrossRef
6.
Zurück zum Zitat Ghosh S, Derle A, Ahire M, More P, Jagtap S, Phadatare SD, Patil AB, Jabgunde AM, Sharma GK, Shinde VS, Dhavale DD, Chopade BA (2013) Phytochemical analysis and free radical scavenging activity of medicinal plants Gnidia glauca and Dioscorea bulbifera. PLoS ONE 8(12):e82529. doi:10.1371/journal.pone.0082529 PubMedCentralPubMedCrossRef Ghosh S, Derle A, Ahire M, More P, Jagtap S, Phadatare SD, Patil AB, Jabgunde AM, Sharma GK, Shinde VS, Dhavale DD, Chopade BA (2013) Phytochemical analysis and free radical scavenging activity of medicinal plants Gnidia glauca and Dioscorea bulbifera. PLoS ONE 8(12):e82529. doi:10.​1371/​journal.​pone.​0082529 PubMedCentralPubMedCrossRef
7.
Zurück zum Zitat Hearon SS, Corbett MK, Lawson RH, Gillaspie AG Jr, Waterworth HE (1978) Two feluous rod viruses in Dioscorea floribunda : symptoms, identification and ultrastructure. Phytopathology 68:1137–1146CrossRef Hearon SS, Corbett MK, Lawson RH, Gillaspie AG Jr, Waterworth HE (1978) Two feluous rod viruses in Dioscorea floribunda : symptoms, identification and ultrastructure. Phytopathology 68:1137–1146CrossRef
9.
Zurück zum Zitat King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy, Ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, p 1338 King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy, Ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, p 1338
10.
Zurück zum Zitat Kondo T, Fuji S, Yamashita K, Kang DK, Chang MU (2005) Broad bean wilt virus 2 in yams. J Gen Plant Pathol 71:441–443CrossRef Kondo T, Fuji S, Yamashita K, Kang DK, Chang MU (2005) Broad bean wilt virus 2 in yams. J Gen Plant Pathol 71:441–443CrossRef
11.
Zurück zum Zitat Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implication of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430PubMedCrossRef Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implication of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430PubMedCrossRef
13.
Zurück zum Zitat Lawson RH, Hearon SS, Smith FF, Kahn RP (1973) Electron microscopy and separation of viruses in Dioscorea floribunda. Phytopathology 63:1435 Lawson RH, Hearon SS, Smith FF, Kahn RP (1973) Electron microscopy and separation of viruses in Dioscorea floribunda. Phytopathology 63:1435
14.
Zurück zum Zitat Lebas BSM (2002) Diversity of viruses infecting Dioscorea species in the South Pacific. PhD thesis, the University of Greenwich Lebas BSM (2002) Diversity of viruses infecting Dioscorea species in the South Pacific. PhD thesis, the University of Greenwich
15.
Zurück zum Zitat Lebas BSM, Ochoa-Corona FM, Elliott DR, Tang Z, Alexander BJR (2005) Partial characterization of a carla-like virus infecting yam (Dioscorea spp.) from China. Plant Dis 89:912CrossRef Lebas BSM, Ochoa-Corona FM, Elliott DR, Tang Z, Alexander BJR (2005) Partial characterization of a carla-like virus infecting yam (Dioscorea spp.) from China. Plant Dis 89:912CrossRef
16.
Zurück zum Zitat Liu MJ, Wang Z, Ju Y, Wong RN, Wu QY (2005) Diosgenin induces cell cycle arrest and apoptosis in human leukemia K562 cells with the disruption of Ca2+ homeostasis. Cancer Chemother Pharmacol 55(1):79–90PubMedCrossRef Liu MJ, Wang Z, Ju Y, Wong RN, Wu QY (2005) Diosgenin induces cell cycle arrest and apoptosis in human leukemia K562 cells with the disruption of Ca2+ homeostasis. Cancer Chemother Pharmacol 55(1):79–90PubMedCrossRef
17.
Zurück zum Zitat Lütcke HA, Chow CK, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6:43–48PubMedCentralPubMed Lütcke HA, Chow CK, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6:43–48PubMedCentralPubMed
18.
Zurück zum Zitat Menzel W, Thottappilly G, Winter S (2014) Characterization of an isometric virus isolated from yam (Dioscorea rotundata) in Nigeria suggests that it belongs to a new species in the genus Aureusvirus. Arch Virol 159:603–606PubMedCrossRef Menzel W, Thottappilly G, Winter S (2014) Characterization of an isometric virus isolated from yam (Dioscorea rotundata) in Nigeria suggests that it belongs to a new species in the genus Aureusvirus. Arch Virol 159:603–606PubMedCrossRef
19.
Zurück zum Zitat Migliori A, Cadilhac B (1976) Contribution to the study of a virus disease of yam Dioscorea trifida in Guadeloupe. Ann Phytopath 8:73–78 Migliori A, Cadilhac B (1976) Contribution to the study of a virus disease of yam Dioscorea trifida in Guadeloupe. Ann Phytopath 8:73–78
20.
Zurück zum Zitat Phillips S, Piggott JD, Brunt AA (1986) Further evidence that Dioscorea latent virus is a Potexvirus. Annals Appl Biol 109:137–145CrossRef Phillips S, Piggott JD, Brunt AA (1986) Further evidence that Dioscorea latent virus is a Potexvirus. Annals Appl Biol 109:137–145CrossRef
22.
Zurück zum Zitat Seal S, Turaki A, Muller E, Kumar PL, Kenyon L, Filloux D, Galzi S, Lopez-Montes A, Iskra-Caruana ML (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Res. doi:10.1016/j.virusres.2014.01.007 PubMed Seal S, Turaki A, Muller E, Kumar PL, Kenyon L, Filloux D, Galzi S, Lopez-Montes A, Iskra-Caruana ML (2014) The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes. Virus Res. doi:10.​1016/​j.​virusres.​2014.​01.​007 PubMed
23.
Zurück zum Zitat Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729PubMedCrossRef Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729PubMedCrossRef
24.
Zurück zum Zitat Umber M, Filloux D, Muller E, Laboureau N, Galzi S, Roumagnac P, Iskra-Caruana ML, Pavis C, Teycheney PY, Seal S (2014) The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Plant Pathol, Mol. doi:10.1111/mpp.12137 Umber M, Filloux D, Muller E, Laboureau N, Galzi S, Roumagnac P, Iskra-Caruana ML, Pavis C, Teycheney PY, Seal S (2014) The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Plant Pathol, Mol. doi:10.​1111/​mpp.​12137
25.
Zurück zum Zitat Van der Vlugt R, Berendsen M (2002) Development of a general potexvirus detection method. Eur J Plant Pathol 108:367–371CrossRef Van der Vlugt R, Berendsen M (2002) Development of a general potexvirus detection method. Eur J Plant Pathol 108:367–371CrossRef
26.
Zurück zum Zitat Wang JG, Zou XJ, Zheng HY, Adams MJ, Chen HR, Chen JP (2009) Molecular characterization of a new macluravirus from yam in Yunnan, China. Arch Virol 154:1379–1380PubMedCrossRef Wang JG, Zou XJ, Zheng HY, Adams MJ, Chen HR, Chen JP (2009) Molecular characterization of a new macluravirus from yam in Yunnan, China. Arch Virol 154:1379–1380PubMedCrossRef
27.
Zurück zum Zitat Youssef F, Marais A, Faure C, Barone M, Gentit P, Candresse T (2011) Characterization of Prunus-infecting Apricot latent virus-like Foveaviruses: evolutionary and taxonomic implications. Virus Res 155:440–445PubMedCrossRef Youssef F, Marais A, Faure C, Barone M, Gentit P, Candresse T (2011) Characterization of Prunus-infecting Apricot latent virus-like Foveaviruses: evolutionary and taxonomic implications. Virus Res 155:440–445PubMedCrossRef
Metadaten
Titel
Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams
verfasst von
Isabelle Acina Mambole
Lydiane Bonheur
Laurence Svanella Dumas
Denis Filloux
Rose-Marie Gomez
Chantal Faure
David Lange
Fabiola Anzala
Claudie Pavis
Armelle Marais
Philippe Roumagnac
Thierry Candresse
Pierre-Yves Teycheney
Publikationsdatum
01.12.2014
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 12/2014
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-014-2211-3

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