Background
Methods
BALB-NeuT Transgenic animals
Iressa™ and cell lines
Establishment and Maintenance of the MAM-1 co-culture Model
Immunohistochemistry
Flow cytometric analysis of MAM-1 co-cultures
Immunofluorescence
Gene Expression Analysis
Results and Discussion
Histological analysis of the primary tumor tissue used to derive MAM-1
Growth and maintenance of MAM-1 explant cultures
Validation of tumor specific and stroma specific antigens in explant cultures by Immunofluorescence and Flow cytometry
The MAM-1 transcriptome has a genetic signature of ErbB-2 breast cancers and desmoplasia observed in invasive breast cancers
Expression Relative to Universal Mouse RNAa
| ||||
---|---|---|---|---|
Agilent Accession | Genbank Accession | MAM | Bam1a | Gene Description and Symbol |
Genes present in the tumor-specific HER-2/neu-Induced Gene Expression Signature described by Astolfi | ||||
A_51_P184886 | NM_011920 | 5.27 | 19.10 | Mus musculus ATP-binding cassette, sub-family G (WHITE), member 2 (Abcg2), mRNA [NM_011920] |
A_52_P336142 | NM_011920 | 4.90 | 17.77 | Mus musculus ATP-binding cassette, sub-family G (WHITE), member 2 (Abcg2), mRNA [NM_011920] |
A_51_P342567 | NM_031185 | 9.10 | 6.60 | Mus musculus A kinase (PRKA) anchor protein (gravin) 12 (Akap12), mRNA [NM_031185] |
A_51_P445166 | NM_019959 | 11.89 | 17.02 | Mus musculus C1q and tumor necrosis factor related protein 1 (C1qtnf1), mRNA [NM_019959] |
A_51_P455647 | NM_009801 | 7.56 | 9.21 | Mus musculus carbonic anhydrase 2 (Car2), mRNA [NM_009801] |
A_51_P303160 | NM_007482 | 14.32 | 23.23 | Mus musculus arginase 1, liver (Arg1), mRNA [NM_007482] |
A_52_P159232 | NM_011926 | 20.60 | 24.52 | Mus musculus CEA-related cell adhesion molecule 1 (Ceacam1), mRNA [NM_011926] |
A_51_P183446 | NM_001039185 | 10.69 | 12.16 | Mus musculus CEA-related cell adhesion molecule 1, mRNA (cDNA clone MGC:18556 IMAGE:4218391), complete cds [BC016891] |
A_51_P171728 | NM_011926 | 9.77 | 12.34 | Mus musculus CEA-related cell adhesion molecule 1 (Ceacam1), mRNA [NM_011926] |
A_52_P240706 | NM_007543 | 23.70 | 31.29 | Mus musculus CEA-related cell adhesion molecule 2 (Ceacam2), mRNA [NM_007543] |
A_51_P362066 | NM_007695 | 8.34 | 3.89 | Mus musculus chitinase 3-like 1 (Chi3l1), mRNA [NM_007695] |
A_51_P495049 | NM_009897 | 10.34 | 11.46 | Mus musculus creatine kinase, mitochondrial 1, ubiquitous (Ckmt1), mRNA [NM_009897] |
A_51_P343309 | NM_009908 | 5.83 | 10.54 | Mus musculus cytidine monophospho-N-acetylneuraminic acid synthetase (Cmas), mRNA [NM_009908] |
A_52_P197963 | NM_009936 | 7.33 | 10.23 | Mus musculus procollagen, type IX, alpha 3 (Col9a3), mRNA [NM_009936] |
A_52_P507877 | NM_007729 | 41.31 | 30.23 | Mus musculus procollagen, type XI, alpha 1 (Col11a1), mRNA [NM_007729] |
A_51_P459477 | NM_007729 | 34.68 | 28.45 | Mus musculus procollagen, type XI, alpha 1 (Col11a1), mRNA [NM_007729] |
A_51_P227280 | NM_007786 | 53.04 | 56.89 | Mus musculus casein kappa (Csnk), mRNA [NM_007786] |
A_51_P227275 | NM_007786 | 26.87 | 32.53 | Mus musculus casein kappa (Csnk), mRNA [NM_007786] |
A_52_P51078 | NM_007801 | 23.49 | 35.47 | Mus musculus cathepsin H (Ctsh), mRNA [NM_007801] |
A_51_P275976 | NM_010070 | 3.24 | Mus musculus docking protein 1 (Dok1), mRNA [NM_010070] | |
A_52_P366842 | NM_010070 | 2.49 | 4.94 | Mus musculus docking protein 1 (Dok1), mRNA [NM_010070] |
A_51_P158037 | NM_013505 | 11.59 | 12.52 | Mus musculus desmocollin 2 (Dsc2), mRNA [NM_013505] |
A_52_P157158 | NM_013505 | 42.42 | 46.62 | Mus musculus desmocollin 2 (Dsc2), mRNA [NM_013505] |
A_52_P252931 | NM_013505 | 107.26 | 265.33 | Mus musculus desmocollin 2 (Dsc2), mRNA [NM_013505] |
A_51_P502614 | NM_026268 | 4.28 | 6.46 | Mus musculus dual specificity phosphatase 6 (Dusp6), mRNA [NM_026268] |
A_51_P455866 | NM_010125 | 27.80 | 29.60 | Mus musculus E74-like factor 5 (Elf5), mRNA [NM_010125] |
A_51_P307979 | NM_007960 | 2.46 | Mus musculus ets variant gene 1 (Etv1), mRNA [NM_007960] | |
A_51_P246166 | NM_007969 | 10.06 | 10.23 | Mus musculus extracellular proteinase inhibitor (Expi), mRNA [NM_007969] |
A_52_P329207 | NM_007969 | 13.14 | 12.84 | Mus musculus extracellular proteinase inhibitor (Expi), mRNA [NM_007969] |
A_51_P329394 | NM_008034 | 6.64 | 8.48 | Mus musculus folate receptor 1 (adult) (Folr1), mRNA [NM_008034] |
A_52_P377791 | NM_008557 | 30.34 | 40.63 | Mus musculus FXYD domain-containing ion transport regulator 3 (Fxyd3), mRNA [NM_008557] |
A_51_P282538 | NM_008077 | 28.43 | 73.47 | Mus musculus glutamic acid decarboxylase 1 (Gad1), mRNA [NM_008077] |
A_52_P144310 | NM_008077 | 27.33 | 68.46 | Mus musculus glutamic acid decarboxylase 1 (Gad1), mRNA [NM_008077] |
A_51_P486810 | NM_030677 | 13.90 | 14.97 | Mus musculus glutathione peroxidase 2 (Gpx2), mRNA [NM_030677] |
A_51_P258409 | NM_010423 | 13.98 | 30.78 | Mus musculus hairy/enhancer-of-split related with YRPW motif 1 (Hey1), mRNA [NM_010423] |
A_51_P365152 | NM_010474 | 23.53 | 48.48 | Mus musculus heparan sulfate (glucosamine) 3-O-sulfotransferase 1 (Hs3st1), mRNA [NM_010474] |
A_52_P281702 | NM_010518 | 2.12 | 3.08 | Mus musculus insulin-like growth factor binding protein 5 (Igfbp5), mRNA [NM_010518] |
A_51_P204153 | NM_010518 | 4.25 | 10.70 | Mus musculus insulin-like growth factor binding protein 5 (Igfbp5), mRNA [NM_010518] |
A_51_P510156 | NM_008491 | 9.56 | 10.11 | Mus musculus lipocalin 2 (Lcn2), mRNA [NM_008491] |
A_52_P153864 | NM_010723 | 2.77 | 3.75 | Mus musculus LIM domain only 4 (Lmo4), mRNA [NM_010723] |
A_51_P394190 | NM_010723 | 3.05 | 4.24 | Mus musculus LIM domain only 4 (Lmo4), mRNA [NM_010723] |
A_52_P415168 | NM_019394 | 8.35 | 8.26 | Mus musculus melanoma inhibitory activity 1 (Mia1), mRNA [NM_019394] |
A_52_P415167 | NM_019394 | 18.65 | 22.26 | Mus musculus melanoma inhibitory activity 1 (Mia1), mRNA [NM_019394] |
A_52_P174346 | NM_019394 | 7.84 | 8.15 | Mus musculus melanoma inhibitory activity 1 (Mia1), mRNA [NM_019394] |
A_51_P220062 | NM_008609 | 10.60 | 15.42 | Mus musculus matrix metalloproteinase 15 (Mmp15), mRNA [NM_008609] |
A_51_P139780 | NM_009402 | 6.81 | 7.64 | Mus musculus peptidoglycan recognition protein 1 (Pglyrp1), mRNA [NM_009402] |
A_51_P195958 | NM_009344 | 3.26 | 6.05 | Mus musculus pleckstrin homology-like domain, family A, member 1 (Phlda1), mRNA [NM_009344] |
A_52_P418791 | NM_011254 | 15.11 | 16.38 | Mus musculus retinol binding protein 1, cellular (Rbp1), mRNA [NM_011254] |
A_51_P423484 | NM_011254 | 8.26 | 7.45 | Mus musculus retinol binding protein 1, cellular (Rbp1), mRNA [NM_011254] |
A_52_P197215 | NM_028777 | 2.76 | 4.29 | Mus musculus SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA [NM_028777] |
A_52_P197223 | NM_028777 | 3.32 | 5.72 | Mus musculus SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA [NM_028777] |
A_51_P268094 | NM_009255 | 22.21 | 38.32 | Mus musculus serine (or cysteine) proteinase inhibitor, clade E, member 2 (Serpine2), mRNA [NM_009255] |
A_52_P637988 | NM_009199 | 40.88 | 62.00 | Mus musculus solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (Slc1a1), mRNA [NM_009199] |
A_51_P110759 | NM_009199 | 20.06 | 26.16 | Mus musculus solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (Slc1a1), mRNA [NM_009199] |
A_52_P426605 | NM_021301 | 23.10 | 30.57 | Mus musculus solute carrier family 15 (H+/peptide transporter), member 2 (Slc15a2), mRNA [NM_021301] |
A_51_P107362 | NM_007706 | 13.23 | 14.79 | Mus musculus suppressor of cytokine signaling 2 (Socs2), mRNA [NM_007706] |
A_51_P346704 | XM_128139 | 10.67 | 11.19 | Mus musculus SRY-box containing gene 10, mRNA (cDNA clone MGC:32314 IMAGE:5027211), complete cds. [BC023356] |
A_52_P192625 | XM_128139 | 23.80 | 36.33 | Mus musculus SRY-box containing gene 10, mRNA (cDNA clone MGC:32314 IMAGE:5027211), complete cds. [BC023356] |
A_52_P161630 | NM_145933 | 4.23 | Mus musculus beta galactoside alpha 2,6 sialyltransferase 1 (St6gal1), mRNA [NM_145933] | |
A_51_P101375 | NM_145933 | 2.35 | 5.29 | Mus musculus beta galactoside alpha 2,6 sialyltransferase 1 (St6gal1), mRNA [NM_145933] |
A_51_P183940 | NM_016866 | 2.21 | 3.02 | Mus musculus serine/threonine kinase 39, STE20/SPS1 homolog (yeast) (Stk39), mRNA [NM_016866] |
A_52_P447944 | NM_008532 | 5.04 | 8.96 | Mus musculus tumor-associated calcium signal transducer 1 (Tacstd1), mRNA [NM_008532] |
A_51_P418820 | NM_009335 | 40.16 | 37.90 | Mus musculus transcription factor AP-2, gamma (Tcfap2c), mRNA [NM_009335] |
A_51_P338262 | NM_011619 | 5.37 | 8.17 | Mus musculus troponin T2, cardiac (Tnnt2), mRNA [NM_011619] |
A_51_P482503 | NM_009413 | 21.46 | 34.02 | Mus musculus tumor protein D52-like 1 (Tpd52l1), mRNA [NM_009413] |
A_51_P506822 | NM_011674 | 42.90 | 81.82 | Mus musculus UDP galactosyltransferase 8A (Ugt8a), mRNA [NM_011674] |
A_52_P439263 | NM_011674 | 56.91 | 70.50 | Mus musculus UDP galactosyltransferase 8A (Ugt8a), mRNA [NM_011674] |
Genes expressed in common with the mouse orthologs of the human "intrinsic" gene list of published by Sorlie
| ||||
A_51_P311038 | NM_001024139 | 7.11 | 9.21 | Mus musculus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 15 (Adamts15), mRNA [NM_001024139] |
A_51_P366811 | NM_007470 | 45.17 | 36.20 | Mus musculus apolipoprotein D (Apod), mRNA [NM_007470] |
A_51_P163015 | NM_172309 | 2.77 | 14.02 | Mus musculus aryl hydrocarbon receptor nuclear translocator-like 2 (Arntl2), mRNA [NM_172309] |
A_51_P455647 | NM_009801 | 7.57 | 9.21 | Mus musculus carbonic anhydrase 2 (Car2), mRNA [NM_009801] |
A_51_P302823 | NM_019686 | 4.02 | 11.39 | Mus musculus calcium and integrin binding family member 2 (Cib2), mRNA [NM_019686] |
A_51_P165185 | NM_016887 | 11.54 | 15.50 | Mus musculus claudin 7 (Cldn7), mRNA [NM_016887] |
A_52_P507877 | NM_007729 | 41.32 | 30.23 | Mus musculus procollagen, type XI, alpha 1 (Col11a1), mRNA [NM_007729] |
A_51_P459477 | NM_007729 | 34.69 | 28.45 | Mus musculus procollagen, type XI, alpha 1 (Col11a1), mRNA [NM_007729] |
A_51_P502614 | NM_026268 | 4.28 | 6.46 | Mus musculus dual specificity phosphatase 6 (Dusp6), mRNA [NM_026268] |
A_51_P116940 | NM_007940 | 15.92 | 5.95 | Mus musculus epoxide hydrolase 2, cytoplasmic (Ephx2), mRNA [NM_007940] |
A_51_P455932 | NM_007974 | 12.81 | 33.87 | Mus musculus coagulation factor II (thrombin) receptor-like 1 (F2rl1), mRNA [NM_007974] |
A_52_P192418 | NM_010175 | 2.63 | 4.90 | Mus musculus Fas (TNFRSF6)-associated via death domain (Fadd), mRNA [NM_010175] |
A_51_P382925 | NM_010175 | 2.16 | 3.61 | Mus musculus Fas (TNFRSF6)-associated via death domain (Fadd), mRNA [NM_010175] |
A_52_P100252 | NM_007988 | 3.23 | 3.40 | Mus musculus clone:A630082H08 product:fatty acid synthase, full insert sequence. [AK080374] |
A_52_P136162 | NM_010206 | 2.27 | 4.37 | Mus musculus fibroblast growth factor receptor 1 (Fgfr1), mRNA [NM_010206] |
A_52_P668810 | NM_010206 | 3.81 | Mus musculus fibroblast growth factor receptor 1 (Fgfr1), mRNA [NM_010206] | |
A_51_P335000 | NM_010211 | 5.05 | Mus musculus four and a half LIM domains 1 (Fhl1), mRNA [NM_010211] | |
A_51_P329394 | NM_008034 | 6.64 | 8.48 | Mus musculus folate receptor 1 (adult) (Folr1), mRNA [NM_008034] |
A_52_P217710 | NM_008056 | 3.08 | Mus musculus frizzled homolog 6 (Drosophila) (Fzd6), mRNA [NM_008056] | |
A_51_P282538 | NM_008077 | 28.43 | 73.47 | Mus musculus glutamic acid decarboxylase 1 (Gad1), mRNA [NM_008077] |
A_52_P144310 | NM_008077 | 27.33 | 68.46 | Mus musculus glutamic acid decarboxylase 1 (Gad1), mRNA [NM_008077] |
A_51_P380005 | NM_015736 | 32.95 | 69.29 | Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (Galnt3), mRNA [NM_015736] |
A_51_P379997 | NM_015736 | 38.50 | 82.09 | Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (Galnt3), mRNA [NM_015736] |
A_51_P462422 | NM_008124 | 5.07 | Mus musculus gap junction membrane channel protein beta 1 (Gjb1), mRNA [NM_008124] | |
A_52_P16419 | NM_010271 | 2.43 | 6.66 | Mus musculus glycerol-3-phosphate dehydrogenase 1 (soluble) (Gpd1), mRNA [NM_010271] |
A_52_P415996 | NM_008184 | 6.29 | Mus musculus glutathione S-transferase, mu 6 (Gstm6), mRNA [NM_008184] | |
A_51_P179664 | NM_008185 | 3.67 | 6.80 | Mus musculus glutathione S-transferase, theta 1 (Gstt1), mRNA [NM_008185] |
A_52_P281702 | NM_010518 | 2.12 | 3.08 | Mus musculus insulin-like growth factor binding protein 5 (Igfbp5), mRNA [NM_010518] |
A_51_P204153 | NM_010518 | 4.25 | 10.70 | Mus musculus insulin-like growth factor binding protein 5 (Igfbp5), mRNA [NM_010518] |
A_52_P401386 | NM_010593 | 3.74 | 5.28 | Mus musculus junction plakoglobin (Jup), mRNA [NM_010593] |
A_52_P642488 | NM_008430 | 24.28 | 26.37 | Mus musculus potassium channel, subfamily K, member 1 (Kcnk1), mRNA [NM_008430] |
A_51_P307964 | NM_010662 | 3.11 | 6.39 | Mus musculus keratin complex 1, acidic, gene 13 (Krt1-13), mRNA [NM_010662] |
A_51_P324814 | NM_010664 | 2.93 | 3.89 | Mus musculus keratin complex 1, acidic, gene 18 (Krt1-18), mRNA [NM_010664] |
A_52_P410685 | NM_033073 | 12.42 | 14.59 | Mus musculus keratin complex 2, basic, gene 7 (Krt2-7), mRNA [NM_033073] |
A_51_P242400 | NM_031170 | 2.56 | 3.75 | Mus musculus keratin complex 2, basic, gene 8 (Krt2-8), mRNA [NM_031170] |
A_51_P174943 | NM_008485 | 6.90 | 10.66 | Mus musculus laminin, gamma 2 (Lamc2), mRNA [NM_008485] |
A_51_P220062 | NM_008609 | 10.60 | 15.42 | Mus musculus matrix metalloproteinase 15 (Mmp15), mRNA [NM_008609] |
A_51_P514085 | NM_013606 | 3.75 | 6.35 | Mus musculus myxovirus (influenza virus) resistance 2 (Mx2), mRNA [NM_013606] |
A_52_P608097 | NM_008756 | 17.70 | 41.15 | Mus musculus occludin (Ocln), mRNA [NM_008756] |
A_51_P486150 | NM_008756 | 10.05 | 12.72 | Mus musculus occludin (Ocln), mRNA [NM_008756] |
A_52_P458279 | NM_011169 | 15.09 | 21.23 | Mus musculus prolactin receptor (Prlr), mRNA [NM_011169] |
A_51_P248345 | NM_009334 | 17.92 | Mus musculus transcription factor AP-2 beta (Tcfap2b), transcript variant 1, mRNA [NM_009334] | |
A_51_P418820 | NM_009335 | 40.16 | 37.90 | Mus musculus transcription factor AP-2, gamma (Tcfap2c), mRNA [NM_009335] |
A_51_P240614 | NM_008536 | 3.79 | 5.43 | Mus musculus transmembrane 4 superfamily member 1 (Tm4sf1), mRNA [NM_008536] |
A_51_P482503 | NM_009413 | 21.46 | 34.02 | Mus musculus tumor protein D52-like 1 (Tpd52l1), mRNA [NM_009413] |
A_51_P106059 | NM_009423 | 2.81 | 3.48 | Mus musculus Tnf receptor associated factor 4 (Traf4), mRNA [NM_009423] |
A_52_P78403 | NM_009423 | 2.90 | 5.78 | Mus musculus Tnf receptor associated factor 4 (Traf4), mRNA [NM_009423] |
Genes expressed in common with the MMTV/neu mammary tumor gene signature described by Landis
| ||||
A_51_P320852 | NM_007657 | 2.52 | 7.50 | Mus musculus CD9 antigen (Cd9), mRNA [NM_007657] |
A_51_P242265 | NM_009950 | 2.45 | 4.36 | Mus musculus CASP2 and RIPK1 domain containing adaptor with death domain (Cradd), mRNA [NM_009950] |
A_52_P559779 | NM_007883 | 17.30 | 22.26 | Mus musculus desmoglein 2 (Dsg2), mRNA [NM_007883] |
A_51_P249848 | NM_007883 | 11.40 | 13.77 | Mus musculus desmoglein 2 (Dsg2), mRNA [NM_007883] |
A_52_P88091 | NM_007883 | 22.00 | 38.20 | Mus musculus desmoglein 2 (Dsg2), mRNA [NM_007883] |
A_52_P601757 | NM_007883 | 76.45 | 101.83 | Mus musculus desmoglein 2, mRNA (cDNA clone IMAGE:4036406), partial cds [BC034056] |
A_51_P502614 | NM_026268 | 4.28 | 6.46 | Mus musculus dual specificity phosphatase 6 (Dusp6), mRNA [NM_026268] |
A_51_P246166 | NM_007969 | 10.06 | 10.23 | Mus musculus extracellular proteinase inhibitor (Expi), mRNA [NM_007969] |
A_52_P329207 | NM_007969 | 13.14 | 12.84 | Mus musculus extracellular proteinase inhibitor (Expi), mRNA [NM_007969] |
A_51_P329394 | NM_008034 | 6.64 | 8.48 | Mus musculus folate receptor 1 (adult) (Folr1), mRNA [NM_008034] |
A_51_P352303 | NM_011983 | 5.94 | 8.58 | Mus musculus homer homolog 2 (Drosophila) (Homer2), mRNA [NM_011983] |
A_52_P176573 | NM_011983 | 7.52 | 12.27 | Mus musculus homer homolog 2 (Drosophila) (Homer2), mRNA [NM_011983] |
A_51_P510156 | NM_008491 | 9.56 | 10.11 | Mus musculus lipocalin 2 (Lcn2), mRNA [NM_008491] |
A_52_P382785 | NM_033525 | 3.71 | 12.17 | Mus musculus nephronectin (Npnt), mRNA [NM_033525] |
A_51_P289889 | NM_033525 | 3.57 | 9.38 | Mus musculus nephronectin (Npnt), mRNA [NM_033525] |
A_52_P17556 | NM_134249 | 6.84 | 18.37 | Mus musculus T-cell immunoglobulin and mucin domain containing 2 (Timd2), mRNA [NM_134249] |
A_51_P500906 | NM_134249 | 12.27 | 24.24 | Mus musculus T-cell immunoglobulin and mucin domain containing 2 (Timd2), mRNA [NM_134249] |
A_51_P482503 | NM_009413 | 21.46 | 34.02 | Mus musculus tumor protein D52-like 1 (Tpd52l1), mRNA [NM_009413] |
Expression of genes associated with the human HER2/neu chromosome 17q amplicon by Bertucci
| ||||
A_51_P317176 | NM_009971 | 12.40 | 13.05 | Mus musculus colony stimulating factor 3 (granulocyte) (Csf3), mRNA [NM_009971] |
A_51_P216179 | NM_010152 | 4.71 | 8.69 | Mus musculus v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (Erbb2), transcript variant 2, mRNA [NM_010152] |
A_51_P230382 | NM_008815 | 2.63 | 3.66 | Mus musculus ets variant gene 4 (E1A enhancer binding protein, E1AF) (Etv4), mRNA [NM_008815] |
A_51_P368823 | NM_010346 | 3.09 | 4.64 | Mus musculus growth factor receptor bound protein 7 (Grb7), mRNA [NM_010346] |
A_52_P401386 | NM_010593 | 3.74 | 5.28 | Mus musculus junction plakoglobin (Jup), mRNA [NM_010593] |
A_52_P567306 | NM_010688 | 2.95 | 4.98 | Mus musculus LIM and SH3 protein 1 (Lasp1), mRNA [NM_010688] |
A_51_P182462 | NM_010688 | 2.46 | 3.44 | Mus musculus LIM and SH3 protein 1 (Lasp1), mRNA [NM_010688] |
A_51_P387123 | NM_011854 | 2.77 | 4.06 | Mus musculus 2'-5' oligoadenylate synthetase-like 2 (Oasl2), mRNA [NM_011854] |
Agilent Accession | Genbank Accession | Ratio of MAM-1 vs. Bam1a | p-value (n = 3) | Gene Description and Symbol | Reference |
---|---|---|---|---|---|
A_51_P162272 | NM_009524 | 5.95 | 2.58E-03 | Mus musculus wingless-related MMTV integration site 5A (Wnt5a), mRNA [NM_009524] | West |
A_51_P390804 | NM_016873 | 125.00 | 8.89E-06 | Mus musculus WNT1 inducible signaling pathway protein 2 (Wisp2), mRNA [NM_016873] | West |
A_51_P220343 | NM_018865 | 16.66 | 4.06E-06 | Mus musculus WNT1 inducible signaling pathway protein 1 (Wisp1), mRNA [NM_018865] | West |
A_52_P658611 | NM_007742 | 19.92 | 4.09E-03 | Mus musculus procollagen, type I, alpha 1 (Col1a1), mRNA [NM_007742] | West, Iacobuzio-Donahue |
A_52_P525107 | NM_007742 | 187.97 | 1.12E-05 | Mus musculus procollagen, type I, alpha 1 (Col1a1), mRNA [NM_007742] | West, Iacobuzio-Donahue |
A_51_P377094 | NM_007742 | 37.17 | 9.02E-08 | Mus musculus procollagen, type I, alpha 1 (Col1a1), mRNA [NM_007742] | West, Iacobuzio-Donahue |
A_51_P414637 | NM_015734 | 168.63 | 7.15E-06 | Mus musculus procollagen, type V, alpha 1 (Col5a1), mRNA [NM_015734] | West |
A_52_P684242 | NM_009930 | 4.93 | 7.45E-05 | Mus musculus procollagen, type III, alpha 1 (Col3a1), mRNA [NM_009930] | West |
A_51_P515605 | NM_009930 | 94.34 | 1.67E-09 | Mus musculus procollagen, type III, alpha 1 (Col3a1), mRNA [NM_009930] | West |
A_51_P474496 | NM_009933 | 12.21 | 6.30E-08 | Mus musculus procollagen, type VI, alpha 1 (Col6a1), mRNA [NM_009933] | West |
A_51_P502132 | NM_011985 | 7.69 | 1.96E-07 | Mus musculus matrix metalloproteinase 23 (Mmp23), mRNA [NM_011985] | West |
A_51_P269166 | NM_021412 | 13.33 | 1.11E-02 | Mus musculus matrix metalloproteinase 19 (Mmp19), mRNA [NM_021412] | West |
A_51_P293087 | NM_008606 | 4.76 | 7.12E-06 | Mus musculus matrix metalloproteinase 11 (Mmp11), mRNA [NM_008606] | West |
A_51_P404077 | NM_020510 | 3.45 | 3.09E-06 | Mus musculus frizzled homolog 2 (Drosophila) (Fzd2), mRNA [NM_020510] | West |
A_52_P597634 | NM_021457 | 4.55 | 5.25E-07 | Mus musculus frizzled homolog 1 (Drosophila) (Fzd1), mRNA [NM_021457] | West |
A_52_P224801 | NM_007993 | 130.03 | 1.47E-03 | Mus musculus fibrillin 1 (Fbn1), mRNA [NM_007993] | West |
A_51_P467224 | NM_007993 | 240.38 | 8.77E-05 | Mus musculus fibrillin 1 (Fbn1), mRNA [NM_007993] | West |
A_52_P220176 | NM_015814 | 20.88 | 3.70E-02 | Mus musculus dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA [NM_015814] | West |
A_52_P489295 | NM_009621 | 4.22 | 2.72E-05 | Mus musculus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 (Adamts1), mRNA [NM_009621] | West |
A_52_P213932 | NM_009621 | 3.10 | 1.94E-05 | Mus musculus a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 (Adamts1), mRNA [NM_009621] | West |
A_52_P280044 | NM_009616 | 16.21 | 1.63E-05 | Mus musculus a disintegrin and metalloproteinase domain 19 (meltrin beta) (Adam19), mRNA [NM_009616] | West |
A_51_P267447 | NM_009616 | 10.35 | 8.95E-04 | Mus musculus a disintegrin and metalloproteinase domain 19 (meltrin beta) (Adam19), mRNA [NM_009616] | West |
A_52_P290457 | NM_007400 | 33.11 | 4.05E-03 | Mus musculus a disintegrin and metalloproteinase domain 12 (meltrin alpha) (Adam12), mRNA [NM_007400] | West, Peduto |
A_51_P510882 | NM_007400 | 9.35 | 1.38E-03 | Mus musculus a disintegrin and metalloproteinase domain 12 (meltrin alpha) (Adam12), mRNA [NM_007400] | West, Peduto |
A_51_P350817 | NM_009922 | 38.46 | 1.29E-04 | Mus musculus calponin 1 (Cnn1), mRNA [NM_009922] | West |
A_52_P599578 | NM_145575 | 1.24 | 1.03E-02 | Mus musculus caldesmon 1 (Cald1), mRNA [NM_145575] | West |
A_51_P357573 | NM_145575 | 1.25 | 3.07E-02 | Mus musculus caldesmon 1 (Cald1), mRNA [NM_145575] | West |
A_51_P157042 | NM_010217 | 14.33 | 1.71E-04 | Mus musculus connective tissue growth factor (Ctgf), mRNA [NM_010217] | West |
A_51_P124748 | NM_009368 | 0.45 | 7.08E-04 | Mus musculus transforming growth factor, beta 3 (Tgfb3), mRNA [NM_009368] | West |
A_51_P212754 | NM_009369 | 11.76 | 1.54E-03 | Mus musculus transforming growth factor, beta induced (Tgfbi), mRNA [NM_009369] | Iacobuzio-Donahue |
A_51_P472292 | NM_008048 | 65.79 | 6.80E-09 | Mus musculus insulin-like growth factor binding protein 7 (Igfbp7), mRNA [NM_008048] | Iacobuzio-Donahue |
A_51_P110301 | NM_009778 | 4.59 | 3.95E-05 | Mus musculus complement component 3 (C3), mRNA [NM_009778] | Iacobuzio-Donahue |
A_51_P218774 | NM_026418 | 2.74 | 9.21E-04 | Mus musculus regulator of G-protein signalling 10 (Rgs10), mRNA [NM_026418] | Iacobuzio-Donahue |
A_51_P224843 | NM_021278 | 2.84 | 2.24E-03 | Mus musculus thymosin, beta 4, X chromosome (Tmsb4x), mRNA [NM_021278] | Iacobuzio-Donahue |
A_51_P111210 | NM_133786 | 1.10 | 1.45E-01 | Mus musculus SMC4 structural maintenance of chromosomes 4-like 1 (yeast) (Smc4l1), mRNA [NM_133786] | Iacobuzio-Donahue |
A_52_P101852 | NM_009242 | 27.25 | 1.90E-07 | Mus musculus secreted acidic cysteine rich glycoprotein (Sparc), mRNA [NM_009242] | Iacobuzio-Donahue |
A_51_P431087 | NM_009242 | 67.11 | 1.96E-08 | Mus musculus secreted acidic cysteine rich glycoprotein (Sparc), mRNA [NM_009242] | Iacobuzio-Donahue |
A_51_P452876 | NM_021515 | 7.46 | 3.48E-06 | Mus musculus adenylate kinase 1 (Ak1), mRNA [NM_021515] | Iacobuzio-Donahue |
A_51_P149562 | NM_009686 | 6.13 | 1.52E-04 | Mus musculus amyloid beta (A4) precursor protein-binding, family B, member 2 (Apbb2), mRNA [NM_009686] | Iacobuzio-Donahue |
A_52_P49250 | NM_010152 | 0.86 | 4.40E-03 | Mus musculus v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (Erbb2), transcript variant 2, mRNA [NM_010152] | Iacobuzio-Donahue |
A_51_P216179 | NM_010152 | 0.54 | 3.14E-03 | Mus musculus v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) (Erbb2), transcript variant 2, mRNA [NM_010152] | Iacobuzio-Donahue |
A_51_P341736 | NM_008610 | 2.74 | 1.93E-04 | Mus musculus matrix metalloproteinase 2 (Mmp2), mRNA [NM_008610] | Wang, Singer |
A_51_P258529 | NM_008885 | 15.77 | 3.73E-05 | Mus musculus peripheral myelin protein (Pmp22), mRNA [NM_008885] | Kunz-Schughart |
A_51_P213359 | NM_008216 | 23.70 | 1.46E-07 | Mus musculus hyaluronan synthase 2 (Has2), mRNA [NM_008216] | Li |
A_52_P582374 | NM_178825 | 0.04 | 5.59E-03 | Mus musculus epithelial stromal interaction 1 (breast) (Epsti1), transcript variant b, mRNA [NM_178825] | Gudjonsson |
A_51_P376050 | NM_029495 | 0.03 | 2.78E-03 | Mus musculus epithelial stromal interaction 1 (breast) (Epsti1), transcript variant a, mRNA [NM_029495] | Gudjonsson |
A_51_P127681 | NM_013885 | 3.62 | 1.28E-07 | Mus musculus chloride intracellular channel 4 (mitochondrial) (Clic4), mRNA [NM_013885] | Suh, Ronnov-Jessen |
A_51_P392687 | NM_011701 | 25.000 | 5.47E-04 | Mus musculus vimentin (Vim), mRNA [NM_011701] | |
A_52_P56471 | NM_007912 | 4.35 | 8.57E-06 | Mus musculus epidermal growth factor receptor (Egfr), transcript variant 2, mRNA [NM_007912] | |
A_51_P392242 | NM_007912 | 4.17 | 1.10E-05 | Mus musculus epidermal growth factor receptor (Egfr), transcript variant 2, mRNA [NM_007912] | |
A_52_P674338 | NM_207655 | 7.14 | 1.90E-03 | Mus musculus epidermal growth factor receptor (Egfr), transcript variant 1, mRNA [NM_207655] | |
A_52_P106259 | NM_207655 | 11.56 | 2.06E-05 | Mus musculus epidermal growth factor receptor (Egfr), transcript variant 1, mRNA [NM_207655] | |
A_51_P414813 | NM_010153 | 0.61 | 3.13E-03 | Mus musculus v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) (Erbb3), mRNA [NM_010153] | |
A_51_P342050 | NM_010153 | 0.58 | 3.28E-02 | Mus musculus v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) (Erbb3), mRNA [NM_010153] | |
A_52_P420504 | NM_007392 | 17.18 | 7.97E-05 | Mus musculus actin, alpha 2, smooth muscle, aorta (Acta2), mRNA [NM_007392] | |
A_52_P210078 | NM_007392 | 101.94 | 6.74E-05 | Mus musculus actin, alpha 2, smooth muscle, aorta (Acta2), mRNA [NM_007392] | |
A_51_P103396 | NM_016879 | 0.260 | 2.69E-04 | Mus musculus keratin complex 2, basic, gene 18 (Krt2-18), mRNA [NM_016879] | |
A_51_P356642 | NM_008471 | 5.550 | 7.53E-06 | Mus musculus keratin complex 1, acidic, gene 19 (Krt1-19), mRNA [NM_008471] | |
A_51_P482128 | NM_008469 | 2.760 | 3.01E-04 | Mus musculus keratin complex 1, acidic, gene 15 (Krt1-15), mRNA [NM_008469] | |
A_51_P118225 | NM_028078 | 0.028 | 7.55E-04 | Mus musculus junction adhesion molecule 4 (Jam4), mRNA [NM_028078] | |
A_51_P358354 | NM_023277 | 30.030 | 2.21E-06 | Mus musculus junction adhesion molecule 3 (Jam3), mRNA [NM_023277] | |
A_52_P374846 | NM_023844 | 19.120 | 9.97E-04 | Mus musculus junction adhesion molecule 2 (Jam2), mRNA [NM_023844] | |
A_51_P418375 | NM_023844 | 10.256 | 8.90E-04 | Mus musculus junction adhesion molecule 2 (Jam2), mRNA [NM_023844] | |
A_52_P93974 | NM_021359 | 0.316 | 1.46E-02 | Mus musculus integrin beta 6 (Itgb6), mRNA [NM_021359] | |
A_52_P459521 | NM_001005607 | 0.261 | 3.06E-05 | Mus musculus integrin beta 4 (Itgb4), transcript variant 3, mRNA [NM_001005607] | |
A_51_P382970 | NM_133721 | 25.125 | 3.19E-02 | Mus musculus integrin alpha 9 (Itga9), mRNA [NM_133721] | |
A_52_P413034 | NM_008398 | 2.985 | 2.73E-02 | Mus musculus integrin alpha 7 (Itga7), mRNA [NM_008398] | |
A_51_P181671 | NM_008398 | 3.401 | 4.71E-03 | Mus musculus integrin alpha 7 (Itga7), mRNA [NM_008398] | |
A_52_P364140 | NM_010577 | 30.030 | 1.76E-06 | Mus musculus integrin alpha 5 (fibronectin receptor alpha) (Itga5), mRNA [NM_010577] | |
A_52_P223495 | NM_010576 | 0.304 | 4.71E-02 | Mus musculus integrin alpha 4 (Itga4), mRNA [NM_010576] | |
A_51_P515056 | NM_013565 | 0.316 | 9.78E-05 | Mus musculus integrin alpha 3 (Itga3), mRNA [NM_013565] | |
A_51_P230405 | NM_013565 | 0.260 | 5.62E-05 | Mus musculus integrin alpha 3 (Itga3), mRNA [NM_013565] | |
A_52_P612019 | NM_008396 | 3.300 | 3.55E-02 | Mus musculus integrin alpha 2 (Itga2), mRNA [NM_008396] |