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Erschienen in: European Journal of Clinical Microbiology & Infectious Diseases 6/2016

24.03.2016 | Original Article

Aerobic culture of methanogenic archaea without an external source of hydrogen

verfasst von: S. Khelaifia, J.-C. Lagier, V. D. Nkamga, E. Guilhot, M. Drancourt, D. Raoult

Erschienen in: European Journal of Clinical Microbiology & Infectious Diseases | Ausgabe 6/2016

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Abstract

Culturing methanogenic archaea is fastidious, expensive, and requires an external source of hydrogen and carbon dioxide. Until now, these microorganisms have only been cultivated under strictly anaerobic conditions. We previously developed a single versatile culture medium containing sugars and anti-oxydants for cultivating all human known methanogens. Performing aerobic cultures in the presence of Bacteroides thetaiotaomicron, which produces hydrogen, allows for cultivation of Methanobrevibacter smithii which itself produces methane. To obtain colonies, we cultivated M. smithii in an agar plate in the upper part of a double chamber flask with a liquid culture of B. thetaiotaomicron in the lower compartment. We subsequently cultured four other methanogenic species for the first time and successfully isolated 13 strains of M. smithii and nine strains of Methanobrevibacter oralis from 100 stools and 45 oral samples. This procedure allows aerobic isolation and antibiotic susceptibility testing. This changes the ability to routinely study methanogens, which have been neglected in clinical microbiology laboratories and may be useful for biogas production.
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Literatur
1.
Zurück zum Zitat Liu Y, Whitman WB (2008) Metabolic, phylogenetic and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci 1125:171–189CrossRefPubMed Liu Y, Whitman WB (2008) Metabolic, phylogenetic and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci 1125:171–189CrossRefPubMed
3.
Zurück zum Zitat Demirel B, Scherer P (2008) The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev Environ Sci Biotechnol 7:173–190CrossRef Demirel B, Scherer P (2008) The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev Environ Sci Biotechnol 7:173–190CrossRef
5.
Zurück zum Zitat Miller TL, Wolin MJ (1974) A serum bottle modification of the Hungate technique for cultivating obligate anaerobes. Appl Microbiol 27:985–987PubMedPubMedCentral Miller TL, Wolin MJ (1974) A serum bottle modification of the Hungate technique for cultivating obligate anaerobes. Appl Microbiol 27:985–987PubMedPubMedCentral
6.
Zurück zum Zitat Miller TL, Wolin MJ (1985) Methanosphaera stadtmanae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen. Arch Microbiol 141:116–122CrossRefPubMed Miller TL, Wolin MJ (1985) Methanosphaera stadtmanae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen. Arch Microbiol 141:116–122CrossRefPubMed
7.
Zurück zum Zitat Wolfe RS, Metcalf WW (2010) A vacuum-vortex technique for preparation of anoxic solutions or liquid culture media in small volumes for cultivating methanogens or other strict anaerobes. Anaerobe 16:216–219CrossRefPubMed Wolfe RS, Metcalf WW (2010) A vacuum-vortex technique for preparation of anoxic solutions or liquid culture media in small volumes for cultivating methanogens or other strict anaerobes. Anaerobe 16:216–219CrossRefPubMed
8.
Zurück zum Zitat Karl DM, Beversdorf L, Bjorkman KM, Church MJ, Martinez A, Delong EF (2008) Aerobic production of methane in the sea. Nat Geosci 1:473–478CrossRef Karl DM, Beversdorf L, Bjorkman KM, Church MJ, Martinez A, Delong EF (2008) Aerobic production of methane in the sea. Nat Geosci 1:473–478CrossRef
9.
Zurück zum Zitat Dione N, Khelaifia S, Lagier JC, Raoult D (2015) The aerobic activity of metronidazole against anaerobic bacteria. Int J Antimicrob Agents 45:537–540CrossRefPubMed Dione N, Khelaifia S, Lagier JC, Raoult D (2015) The aerobic activity of metronidazole against anaerobic bacteria. Int J Antimicrob Agents 45:537–540CrossRefPubMed
10.
Zurück zum Zitat La Scola B, Khelaifia S, Lagier JC, Raoult D (2014) Aerobic culture of anaerobic bacteria using antioxidants: a preliminary report. Eur J Clin Microbiol Infect Dis 33:1781–1783CrossRefPubMed La Scola B, Khelaifia S, Lagier JC, Raoult D (2014) Aerobic culture of anaerobic bacteria using antioxidants: a preliminary report. Eur J Clin Microbiol Infect Dis 33:1781–1783CrossRefPubMed
11.
Zurück zum Zitat Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D (2012) Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect 18:1185–1193CrossRefPubMed Lagier JC, Armougom F, Million M, Hugon P, Pagnier I, Robert C, Bittar F, Fournous G, Gimenez G, Maraninchi M, Trape JF, Koonin EV, La Scola B, Raoult D (2012) Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect 18:1185–1193CrossRefPubMed
12.
Zurück zum Zitat Dridi B, Raoult D, Drancourt M (2012) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of Archaea: towards the universal identification of living organisms. APMIS 120:85–91CrossRefPubMed Dridi B, Raoult D, Drancourt M (2012) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of Archaea: towards the universal identification of living organisms. APMIS 120:85–91CrossRefPubMed
13.
Zurück zum Zitat Dridi B, Henry M, El Khéchine A, Raoult D, Drancourt M (2009) High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS ONE 4, e7063CrossRefPubMedPubMedCentral Dridi B, Henry M, El Khéchine A, Raoult D, Drancourt M (2009) High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS ONE 4, e7063CrossRefPubMedPubMedCentral
14.
Zurück zum Zitat Debets-Ossenkopp YJ, Herscheid AJ, Pot RGJ, Kuipers EJ, Kusters JG, Vandenbroucke-Grauls CMJE (1999) Prevalence of Helicobacter pylori resistance to metronidazole, clarithromycin, amoxycillin, tetracycline and trovafloxacin in The Netherlands. J Antimicrob Chemother 43:511–515CrossRefPubMed Debets-Ossenkopp YJ, Herscheid AJ, Pot RGJ, Kuipers EJ, Kusters JG, Vandenbroucke-Grauls CMJE (1999) Prevalence of Helicobacter pylori resistance to metronidazole, clarithromycin, amoxycillin, tetracycline and trovafloxacin in The Netherlands. J Antimicrob Chemother 43:511–515CrossRefPubMed
15.
Zurück zum Zitat van Zwet AA, de Boer WA, Schneeberger PM, Weel J, Jansz AR, Thijs JC (1996) Prevalence of primary Helicobacter pylori resistance to metronidazole and clarithromycin in The Netherlands. Eur J Clin Microbiol Infect Dis 15:861–864CrossRefPubMed van Zwet AA, de Boer WA, Schneeberger PM, Weel J, Jansz AR, Thijs JC (1996) Prevalence of primary Helicobacter pylori resistance to metronidazole and clarithromycin in The Netherlands. Eur J Clin Microbiol Infect Dis 15:861–864CrossRefPubMed
16.
Zurück zum Zitat Khelaifia S, Brunel JM, Raoult D, Drancourt M (2013) Hydrophobicity of imidazole derivatives correlates with improved activity against human methanogenic archaea. Int J Antimicrob Agents 41:544–547CrossRefPubMed Khelaifia S, Brunel JM, Raoult D, Drancourt M (2013) Hydrophobicity of imidazole derivatives correlates with improved activity against human methanogenic archaea. Int J Antimicrob Agents 41:544–547CrossRefPubMed
17.
Zurück zum Zitat Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543–551CrossRefPubMed Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543–551CrossRefPubMed
18.
Zurück zum Zitat Seedorf H, Dreisbach A, Hedderich R, Shima S, Thauer RK (2004) F420H2 oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F420-dependent enzyme involved in O2 detoxification. Arch Microbiol 182:126–137CrossRefPubMed Seedorf H, Dreisbach A, Hedderich R, Shima S, Thauer RK (2004) F420H2 oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F420-dependent enzyme involved in O2 detoxification. Arch Microbiol 182:126–137CrossRefPubMed
19.
Zurück zum Zitat Horz HP, Conrads G (2011) Methanogenic archaea and oral infections—ways to unravel the black box. J Oral Microbiol 3:10CrossRefPubMedCentral Horz HP, Conrads G (2011) Methanogenic archaea and oral infections—ways to unravel the black box. J Oral Microbiol 3:10CrossRefPubMedCentral
20.
Zurück zum Zitat Huynh HTT, Pignoly M, Nkamga VD, Drancourt M, Aboudharam G (2015) The repertoire of archaea cultivated from severe periodontitis. PLoS ONE 10, e0121565CrossRefPubMedPubMedCentral Huynh HTT, Pignoly M, Nkamga VD, Drancourt M, Aboudharam G (2015) The repertoire of archaea cultivated from severe periodontitis. PLoS ONE 10, e0121565CrossRefPubMedPubMedCentral
21.
Zurück zum Zitat Nkamga VD, Huynh HT, Aboudharam G, Ruimy R, Drancourt M (2015) Diversity of human-associated Methanobrevibacter smithii isolates revealed by multispacer sequence typing. Curr Microbiol 70:810–815CrossRefPubMed Nkamga VD, Huynh HT, Aboudharam G, Ruimy R, Drancourt M (2015) Diversity of human-associated Methanobrevibacter smithii isolates revealed by multispacer sequence typing. Curr Microbiol 70:810–815CrossRefPubMed
22.
Zurück zum Zitat Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI (2007) Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut. Proc Natl Acad Sci U S A 104:10643–10648CrossRefPubMedPubMedCentral Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI (2007) Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut. Proc Natl Acad Sci U S A 104:10643–10648CrossRefPubMedPubMedCentral
23.
Zurück zum Zitat Dridi B, Raoult D, Drancourt M (2011) Archaea as emerging organisms in complex human microbiomes. Anaerobe 17:56–63CrossRefPubMed Dridi B, Raoult D, Drancourt M (2011) Archaea as emerging organisms in complex human microbiomes. Anaerobe 17:56–63CrossRefPubMed
Metadaten
Titel
Aerobic culture of methanogenic archaea without an external source of hydrogen
verfasst von
S. Khelaifia
J.-C. Lagier
V. D. Nkamga
E. Guilhot
M. Drancourt
D. Raoult
Publikationsdatum
24.03.2016
Verlag
Springer Berlin Heidelberg
Erschienen in
European Journal of Clinical Microbiology & Infectious Diseases / Ausgabe 6/2016
Print ISSN: 0934-9723
Elektronische ISSN: 1435-4373
DOI
https://doi.org/10.1007/s10096-016-2627-7

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