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Archives of Virology

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17.08.2018 | Annotated Sequence Record

Complete genome sequence of PFP1, a novel T7-like Pseudomonas fluorescens bacteriophage

verfasst von: Meng Li, Xinran Chen, Yongsheng Ma, Zhibo Li, Qiancheng Zhao

Erschienen in: Archives of Virology | Ausgabe 12/2018

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Abstract

The complete genomic sequence of Pseudomonas fluorescens bacteriophage PFP1, isolated from sewage samples collected in Liaoning Province, China, were sequenced in this study and found to be 40,914 bp long. The PFP1 genome is composed of linear double-stranded DNA with 55.81% G+C content and 45 putative protein-coding genes, and no rRNA and tRNA genes. Comparative genomics and phylogenetic analysis revealed that the Pseudomonas fluorescens phage PFP1 is a new member of the genus T7virus. This information can be used to develop novel phage-based control strategies against Pseudomonas fluorescens.

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Masák J, Alena Č, Schreiberová O, Rezanka T (2014) Pseudomonas biofilms: possibilities of their control. Fems Microbiol Ecol 89:1–14CrossRef

Pérez PR, Burgos MG, Gálvez A et al (2015) Application of bacteriophages in post-harvest control of human pathogenic and food spoiling bacteria. Crit Rev Biotechno 36:851–861CrossRef

Hernández I (2017) Bacteriophages against Serratia as Fish Spoilage Control Technology. Front Microbiol 8:449PubMedPubMedCentral

NCBI Resource Coordinators (2018) Database resources of the National Center for Biotechnology Information. Nucl Acids Res 46:8–13CrossRef

Hu Z, Meng XC, Liu F et al (2016) Isolation and characterisation of lytic bacteriophages against Pseudomonas spp., a novel biological intervention for preventing spoilage of raw milk. Int Dairy J 55:72–78CrossRef

Li M, Li MZ, Lin H et al (2016) Characterization of the novel T4-like Salmonella enterica bacteriophage STP4-a and its endolysin. Arch Virol 161:377–384CrossRef

Delcher AL, Bratke KA, Powers EC et al (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23(6):673–679CrossRef

Eller MR, Salgado RL, Vidigal PMP et al (2013) Complete Genome Sequence of the Pseudomonas fluorescens Bacteriophage UFV-P2. Genome A 1(1):1479–1487

Altschul SF, Gish W, Miller W et al (1990) Basic local alignment search tool. J Mol Biol 215:403CrossRef

10.

Schattner P, Brooks AN, Lowe TM (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucl Acids Res 33:686–689CrossRef

11.

Lagesen K, Hallin P, Rødland EA et al (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucl Acids Res 35:3100CrossRef

12.

Klucar L, Stano M, Hajduk M (2010) phiSITE: database of gene regulation in bacteriophages. Nucl Acids Res 38:366–370CrossRef

13.

Timothy B, Elkan C (1993) Fitting a mixture model by expectation maximization to discover motifs in bipolymers. USUD Technical Report CS94-351

14.

Li RW (2011) Metagenomics and its applications in agriculture, biomedicine and environmental studies. Nova Science Publisher, New York

15.

Lesnik EA, Sampath R, Levene HB et al (2001) Prediction of rho-independent transcriptional terminators in Escherichia coli. Nucl Acids Res 29(17):3583–3594CrossRef

16.

Gasteiger E, Hoogland C, Gattiker A et al (2005) The proteomics protocols handbook, protein identification and analysis tools on the ExPASy server. Humana Press, New York, pp 571–607CrossRef

17.

Mahadevan P, King JF, Seto D (2009) CGUG: in silico proteome and genome parsing tool for the determination of “core” and unique genes in the analysis of genomes up to ca. 1.9 Mb. BMC Res Notes 2(1):168CrossRef

18.

Santos SB, Kropinski AM, Ceyssens PJ et al (2011) Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus. J Virol 85(21):11265–11273CrossRef

19.

Chen Z, Schneider TD (2005) Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases. Nucl Acids Res 33(19):6172–6187CrossRef

Titel: Complete genome sequence of PFP1, a novel T7-like Pseudomonas fluorescens bacteriophage
verfasst von: Meng Li
Xinran Chen
Yongsheng Ma
Zhibo Li
Qiancheng Zhao
Publikationsdatum: 17.08.2018
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 12/2018
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3979-3

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Complete genome sequence of PFP1, a novel T7-like Pseudomonas fluorescens bacteriophage

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