Efficacy and pharmacokinetic evaluation of a novel anti-malarial compound (NP046) in a mouse model

Animal experiments were performed at the animal unit of the PK laboratory of the University of Cape Town, division of clinical pharmacology following the grant of ethical approval from the Animal Research Ethics Committee of the Faculty of Health Sciences of the University of Cape Town (project no. 011/022).

NP046 (C₂₁H₂₆FNO, MW = 327.4) was synthesized and its HPLC purity was determined to be > 99% (for details of the synthesis see Additional file 1). All chemicals and reagents used in this study were of analytical grade or ACS (American Chemical Society) grade. Ammonium formate (97% pure), sodium acetate (purity > 99%), chloroquine phosphate and PEG400 were purchased from Sigma-Aldrich Gmbh (Steinheim, Germany), formic acid (98 – 100%), tert-butylmethyl ether (purity > 99%) and ethanol (GC > 99.9%) were purchased from Merck KGaA (Darmstadt, Germany), acetonitrile and methanol (all of high-purity grade) were purchased from Honeywell, Burdick & Jackson (Muskegon, MI 49442, USA). Water used to prepare solutions was purified by a Millipore Elix 10 reverse osmosis and Milli-Q^® (Millipore, USA) Gradient A 10 polishing system.

Male C57BL/6 mice 12 to 16 weeks old, weighing 20 to 25 g were obtained from the University of Cape Town`s animal unit. They were kept in cages (a maximum of 5 mice per cage) in a temperature-controlled room with a 12 hours day/night light cycle. Ample dried food and water were supplied, and their sanitation was monitored daily. The animals were acclimatized to the test environment for 3 to 4 days before the experiment started.

Plasmodium berghei transfected with green fluorescence protein (strain ANKA), a chloroquine-sensitive strain, was stored in liquid nitrogen. Parasites were thawed and administered intraperitoneally (IP) to infect two donor mice a week before the experiment commenced. Then the parasite-infected red blood cells (RBCs) were collected into heparinized tubes by tail bleeding and the parasitaemia was determined using flow cytometry (≥15%). Finally, each of the test animals received 200 μl of the P. berghei-infected RBCs (1×10⁷ per 200 μl PBS) IP to infect them with the parasite. There were three animals per dose group, and each of them received 200 μl of NP046 in water orally and intravenously (volume adjusted relative to the weight of mouse) at their respective dose concentration as shown below:

The test compound was administered to the animals once a day for four days. The first dose was administered two hours after infection on day one, followed by the second, third and fourth dose at intervals of 24 hours. Blood samples were collected via tail bleeding in tubes containing PBS on day 5, and % parasitaemia was determined with FACSCalibur™ using the software CellQuestPro [5].

Finally, the percentage parasite growth inhibition was calculated using the following equation [6]:

The in vivo PK properties of NP046 were evaluated following oral (50 and 10 mg/kg) and IV (5 mg/kg) administration of the compound in water to male C57BL/6 mice (n = 5). Blood samples were collected via tail bleeding in heparinized tubes at predetermined sampling times on ice, and were stored at -80°C until analysis. Despite the critical problem of obtaining numerous blood samples from a mouse without compromising the health/safety of the animal, blood samples at all the sampling times, i.e. 0.17, 0.5, 1, 3, 5 and 7 hours for the IV dose groups, and 0.5, 1, 3, 5 and 7 hours for the oral dose groups were collected from each mouse. The extraction volume during sample analysis was targeted at the lowest possible volume (20 μl) thereby minimizing the total volume of blood harvested from the animal.

Blood samples collected from mice following the administration of NP046 together with the calibration standards (STDs) and quality controls (QCs) of NP046 were analyzed using a validated LC-MS/MS assay (for details of the LC-MS/MS assay see Additional file 2). Concentration vs time profiles were constructed and using Summit PK software the data were processed to obtain the PK properties of NP046.

The mean percentage parasitaemia (± S.E.M) and percentage of parasite growth inhibition data of NP046 in P. berghei-infected mice assessed on day five post-infection is presented in Table 1, and the summary chart of the percentage of parasite growth inhibition is presented in Figure 2. The 50 and 10 mg/kg NP046 oral dose groups resulted in percentage of parasite growth inhibition of 47.3% and 24.6%, respectively, while the 5 and 1 mg/kg NP046 IV dose groups resulted in 87.4% and 57.6% growth inhibition, respectively, on day five post-infection relative to the negative control (placebo) group. The IV dose group showed a higher percentage of parasite growth inhibition relative to the oral dose group, which correlates well with the poor oral absorption of NP046 as presented in the next section.

Compounds that reduce parasitaemia by 30% or more are considered active and are further evaluated in secondary screens [7]. Thus, NP046 which exhibited a 47.3% reduction in parasitaemia at a 50 mg/kg oral dose relative to CQ can be considered as an active compound and proceed for further secondary screens.

Blood samples collected from mice after the administration of NP046, together with the calibration standards (STDs) and quality controls (QCs), were analysed using a fully validated LC-MS/MS assay. NP046 concentrations were detectable for up to seven hours after oral and IV dosing. Concentration vs time profiles (Figures 3 and 4) were constructed and the data processed with Summit PK software (non-compartmental analysis) to obtain the PK parameters as presented in Table 2. The LC-MS/MS method performed very well; NP046 concentrations in the mice were detectable for up to seven hours after both 50 and 10 mg/kg oral dosing, with mean concentrations of 0.05 and 0.02 μM, respectively. In contrast to oral dosing, the 5 mg/kg IV dose resulted in a mean blood NP046 concentration at seven hours after dosing of 0.14 μM.

The oral dose regimens of NP046 showed dose-dependent PK relationships, i.e. increasing the oral dose from 10 mg/kg to 50 mg/kg increased the AUC from 30 to 80 min.μmol/L. The mean elimination half-life of NP046 following oral administration was 4.4 hours and 3.1 hours for the 50 mg/kg and 10 mg/kg doses, respectively, while for the IV route it was 3.2 hours, indicating a moderate elimination half-life. The compound has a very high volume of distribution (16.9 L/kg), indicating high distribution of the drug in tissues. The estimated oral bioavailability of NP046 at 50 mg/kg and 10 mg/kg were very low at 3.2% and 6.0%, respectively.

The oral bioavailability of NP046 was low. Low oral bioavailability could be the result of the following reasons [8]:

Therefore, investigating some of the reasons for low bioavailability in the early stage of the drug development process, such as plasma-protein binding, microsomal stability, solubility, etc., is helpful in enhancing the drug development process. Thus, in this study the following investigations on some of the probable causes for low bioavailability were performed:

PPB (plasma protein binding), the extent to which a drug binds to protein in plasma, can affect the PK-PD properties of a drug. Thus, determining the PPB property of a drug in the early stage of drug development process is crucial and a prerequisite for lead prioritization [9]. Initially the PPB assay was performed using an ultrafiltration method [see Additional file 3], which depends on centrifugal force to move the unbound analyte of interest through a size-selective membrane. Ultrafiltration is recommended for the determination of PPB property if the non-specific binding (NSB) of the test drug to the micro-partition device is less than 5%. If NSB > 5%, an alternative technique such as equilibrium dialysis or ultracentrifugation should be used [9].

In this study, since the NSB > 5%, ultracentrifugation was used to assess the PPB property of NP046 [for the methodology see Additional file 3]. NP046 showed a moderate PPB property, i.e. 28% at 1000 ng/ml and 20.3% at 10 ng/ml.

Kinetic solubility is the measurement of the solubility of a pre-dissolved compound (typically in DMSO, a strong organic solvent) in an aqueous buffer [10]. Solubility, one of the most important properties in a drug discovery process, is a determinant factor in intestinal absorption and oral bioavailability. In other words, for a drug to be absorbed and became available in the systemic circulation and to act on the target cell, irrespective of its formulation or route of administration, it should go into solution, i.e. it should be able to dissolve and diffuse through the intestinal membrane [10]. The kinetic solubility of NP046 was determined using an HPLC-UV method at pH 2.0 and 7.4 [for the methodology see Additional file 4]. The concentration of the test compound (x) in PBS samples was calculated from the peak area (y) in its UV chromatogram by extrapolation from the three-point calibration line, using the equation y = ax + b; where a = slope and b = intercept. The results are presented in Table 3.

The pH of the stomach is approximately 1.4 to 2.0, and that of the intestine where drug absorption takes place is approximately pH 6.8 to 8.0 [11]. NP046 is highly soluble at pH 2.0 indicating that it can dissolve in the stomach and pass into the intestine (pH 6.8 – 8) where it starts to precipitate as its solubility at pH 7.4 is very low. Thus its ability to diffuse through the intestinal membrane and get absorbed is limited resulting in a very low oral bioavailability as shown in the PK evaluation experiment.

Metabolism is an enzymatic process in which a drug is chemically modified into polar metabolites that can be more readily excreted from the body. Metabolism occurs mainly in the liver, and the intestine [10]. The metabolic stability of NP046 was determined in human and mouse liver microsomes using a multiple-time-point method at 0, 5, 10, 30, and 60 minutes [for the methodology see Additional file 5]. The in vitro intrinsic clearance values of NP046 in human and mouse liver microsomes were 118.7 μl/min/mg and 656.8 μl/min/mg, respectively, which are considered high and require a metabolism SAR optimization of NP046 to improve its metabolic stability.

Permeability is the speed/velocity and extent to which a drug passes through a biological membrane obstacle in a living system, such as the gastrointestinal (GI) epithelial cells, the blood capillary wall, the target cell membrane [10]. The Caco-2 cell line (a continuous line of heterogeneous human epithelial colorectal adenocarcinoma cells), the most widely used and recognized as a model of the intestinal barrier [11] was used to determine the in vitro permeability of NP046 [for the methodology see Additional file 6].

The transport of each drug from the apical side to the basolateral side was done using a transport buffer that consisted of Hank’s Balanced Salt Solution (HBSS) + 10 mM HEPES + 0.35 g/ml NaHCO₃, pH 7.4 (1:100 1 M HEPES in HBSS). The drug transport assay was performed by determining the concentrations of the test compound from the basolateral chamber, using an LC-MS/MS assay. But no quantifiable amount of the test compound was found in the solution obtained from the basolateral chamber. Therefore, the experiment was repeated and the same result was obtained. This could be due to the following reasons:

Lipophilicity is a compound’s tendency to partition into a non-polar lipid matrix versus an aqueous matrix [10]. It is an important property of a drug which has a significant influence on the drug ADME/tox properties as well as its biological activity. In this paper, the distribution coefficients (Log D_pHx) of NP046 and controls (ouabain, hydrocortisone and verapamil) were determined using a scaled-down shake-flask method that had been adapted for a 96-well plate in order to enable a high throughput.

Stock solutions of NP046 and controls in DMSO (10 mM) were prepared and an aliquot of each phase (octanol/PBS) was analysed by an HPLC-Diode array detector (DAD) method. Chromatographic separation was achieved on a Phenomenex^® Kinetex C18 (50 × 2.1 mm i.d. 2.6 μm) column with a gradient elution, using mobile phase (A) 5 mM ammonium format-acetonitrile (95:5, v/v) and (B) 5 mM ammonium format-acetonitrile (5:95, v/v). The Log D values were calculated using the analyte peak areas obtained from each phase (Octanol/PBS) according to the following equation [12]:

The Log D_7.4 for NP046 was found to be 2.6, which is in the ideal range (Log D_7.4 1 to 3), and is expected to have good intestinal absorption but minimum metabolism. However, its oral bioavailability was low which could have resulted from intestinal metabolism leading to first-pass extraction. The small intestine, which is estimated to have about 1% CYP3A of the average hepatic content, has the ability to metabolise drugs resulting in first-pass extraction more than the hepatic metabolism for some drugs leading to limited oral bioavailability [13].