Background
Case presentation
Genetic analysis
CHR | POS | RB | AB | Gene | Mutation | SIFT | PolyPhen-2 | MutationTaster | PANTHER | OMIM clinical phenotype | ToppGene function | ACMG classification |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 45,481,060 | C | T |
UROD
| NM_000374: c.994C > T, p.R332C | 0,D | 0.94,D | 0.99,D | – | AD or AR: Porphyria cutanea tarda | heme biosynthetic process | BP5 |
2 | 149,216,410 | G | A |
MBD5
| NM_018328: c.83G > A, p.R28H | 0,D | 0.99,D | 0.99,D | P | AD: Mental retardation | response to growth hormone | BP5 |
2 | 189,953,479 | G | T |
COL5A2
| NM_000393: c.587G > T, p.A196D | 0.29,T | 0.98,D | 0.99,D | – | AD: Ehlers-Danlos syndrome | regulation of endodermal cell differentiation | BP4, BP5 |
3 | 38,674,642 | G | A |
SCN5A
| NM_198056: 157G > A, p.R53W | 0,D | 0.36,B | 0.95,D | P | AD: Atrial fibrillation | voltage-gated sodium channel activity | BP4, BP5 |
3 | 184,953,112 | G | A |
EHHADH
| NM_001966: c.317G > A, p.A106V | 0,D | 0.99,D | 0.99,D | P | AD: Fanconi renotubular syndrome | peroxisomal transport | BP5 |
17 | 48,701,856 | G | A | CACNA1G | NM_018896: c.6365G > A, p.R2122H | 0.04,D | 0.01,B | 0.8,D | P | AD: Spinocerebellar ataxia | voltage-gated calcium channel | BP4, BP5 |
17 | 54,672,274 | C | G |
NOG
| NM_005450: c.690C > G, p.C230W | 0,D | 0.99,D | 0.99,D | D | AD: Symphalangism proximal | fibroblast growth factor receptor signaling pathway | PM1, PM2 |
Prenatal diagnosis
Discussion
No. | Mutation | Phenotypes | Reference |
---|---|---|---|
1
|
p. Leu20fs
|
Multiple synostoses syndrome
|
Takahashi et al. (2001)
|
2 | p. Pro35Ala | Brachydactyly type B | Lehmann et al. (2007) |
3
|
p. Pro35Ser
|
Teunissen-Cremers syndrome
|
Hirshoren et al. (2008)
|
4
|
p. Pro35Ser
|
Proximal symphalangism
|
Mangino et al. (2002)
|
5 | p. Pro35Ser | Brachydactyly type B | Lehmann et al. (2007) |
6 | p. Pro35Arg | Proximal symphalangism | Gong et al. (1999) |
7 | p. Pro35Arg | Tarsal–carpal coalition syndrome | Dixon et at. (2001) |
8 | p. Ala36Pro | Brachydactyly type B | Lehmann et al. (2007) |
9
|
p. Pro37Arg
|
Tarsal–carpal coalition syndrome
|
Debeer et al. (2004)
|
10 | p. Pro42Ala | Multiple synostoses syndrome | Debeer et al. (2005) |
11 | p. Pro42Ser | Proximal symphalangism | Sha et al. (2019) |
12 | p. Pro42Arg | Multiple synostoses syndrome | Oxley et al. (2008) |
13 | p. Pro42Thr | Multiple synostoses syndrome | Aydin, H et al. (2013) |
14
|
p. Val44fs
|
Teunissen-Cremers syndrome
|
Weekamp et al. (2005)
|
15 | p. Glu48Lys | Brachydactyly type B | Lehmann et al. (2007) |
16
|
p. Glu48Lys
|
Proximal symphalangism
|
Kosaki et al. (2004)
|
17 | p. Pro50Arg | Tarsal–carpal coalition syndrome | Debeer et al. (2005) |
18 | p. Asp55Tyr | Proximal symphalangism | Xiong et al. (2019) |
19
|
p. Glu85fs
|
Stapes ankylosis with broad thumb and toes
|
Brown et al. (2002)
|
20 | p. Arg87fs | Multiple synostoses syndrome | Lee et al. (2014) |
21 | p. Gly91Cys | Fibrodysplasia ossificans progressiva | Kaplan et al. (2008) |
22 | p. Gly92Arg | Fibrodysplasia ossificans progressiva | Kaplan et al. (2008) |
23 | p. Gly92Glu | Fibrodysplasia ossificans progressiva | Kaplan et al. (2008) |
24 | p. Ala95Thr | Fibrodysplasia ossificans progressiva | Kaplan et al. (2008) |
25
|
p. Ala102fs
|
Proximal symphalangism
|
Thomeer et al. (2011)
|
26
|
p. Gln110X
|
Stapes ankylosis with broad thumb and toes
|
Brown et al. (2002)
|
27
|
p. Leu129X
|
Proximal symphalangism
|
Takahashi et al. (2001)
|
28
|
p.Gln131X
|
Stapes ankylosis with broad thumbs and toes
|
Takashi etal. (2014)
|
29
|
p. Lys133X
|
Stapes ankylosis with broad thumb and toes
|
Takano et al. (2016)
|
30
|
p. Arg136Cys
|
Proximal symphalangism
|
Masuda et al. (2014)
|
31
|
p. Trp150Cys
|
Proximal symphalangism
|
Pan et al. (2015)
|
32
|
p. Cys155Phe
|
Stapes ankylosis with symphalangism
|
Usami et al. (2012)
|
33 | p. Cys155Ser | Proximal symphalangism | Usami et al. (2012) |
34 | p. Arg167Gly | Brachydactyly type B | Lehmann et al. (2007) |
35 | p. Arg167Cys | Proximal symphalangism | Liu et al. (2015) |
36 | p. Cys184Tyr | Proximal symphalangism | Takahashi et al. 2001 |
37
|
p. Cys184Phe
|
Proximal symphalangism
|
Usami et al. 2012
|
38 | p. Pro187Ser | Brachydactyly type B | Lehmann et al. (2007) |
39
|
p. Pro187Ala
|
Proximal symphalangism
|
Ganaha et al. (2015)
|
40
|
p. Glu188fs
|
Teunissen-Cremers syndrome
|
Weekamp et al. (2005)
|
41 | p. Gly189Cys | Proximal symphalangism | Gong et al. (1999) |
42
|
p. Met190Val
|
Multiple synostoses syndrome
|
Oxley et al. (2008)
|
43
|
p. Leu203Pro
|
Teunissen-Cremers syndrome
|
Weekamp et al. (2005)
|
44
|
p. Arg204Leu
|
Tarsal/carpal coalition syndrome
|
Dixon et al. (2001)
|
45 | p. Arg204Gln | Tarsal-carpal coalition syndrome | Das et al. (2018) |
46 | p. Trp205X | Multiple synostoses syndrome | Dawson et al. (2006) |
47
|
p. Trp205Cys
|
Facioaudiosymphalangism syndrome
|
van den Ende et al. (2005)
|
48 | p. Trp205fs | Stapes ankylosis with broad thumb and toes | Emery et al. (2009) |
49
|
p. Cys215X
|
Stapes ankylosis with broad thumb and toes
|
Usami et al. (2012)
|
50 | p. Trp217Gly | Multiple synostoses syndrome | Gong et al. (1999) |
51
|
p. Ile220Asn
|
Proximal symphalangism
|
Gong et al. (1999)
|
52
|
p. Ile220fs
|
Proximal symphalangism
|
Gong et al. (1999)
|
53 | p. Tyr222Asp | Proximal symphalangism | Gong et al. (1999) |
54 | p. Tyr222Cys | Proximal symphalangism | Gong et al. (1999) |
55 | p. Tyr222Cys | Tarsal–carpal coalition syndrome | Dixon et al. (2001) |
56 | p. Pro223Leu | Proximal symphalangism | Gong et al. (1999) |
57
|
p. Cys228Gly
|
Stapes ankylosis with broad thumb and toes
|
Ishino et al. (2015)
|
58
|
p. Cys228Ala
|
Multiple synostoses syndrome
|
Ganaha et al. (2015)
|
59
|
p. Cys230Tyr
|
Multiple synostoses syndrome
|
Bayat et al. (2016)
|
60
|
p. Cys230Trp
|
Proximal symphalangism
|
Present study
|
61
|
p. Cys232Trp
|
Multiple synostoses syndrome
|
Rudnik-Schöneborn et al. (2010)
|