Background
Methods
Subjects
Genotyping of rare variation
RNA extraction and real-time qPCR
Primer | |
---|---|
rs759883023-TA | TTTTTTTTTTTTGCTTGCAGCCTGACTTAGCCCCTGA |
rs759883023-TC | TTTTTTTTTTTTTTTGCTTGCAGCCTGACTTAGCCCCTGC |
rs759883023-TR | AGAGGCTGCCGGAACCCAGCGGCCCTTTTTTTTT |
AKAP2
| Forward: TGCATTCTGCCGTGTTTATAGGTG |
Reverse: TGCCACTGACAGACCCTGTTTCC | |
GAPDH
| Forward: GAGTCAACGGATTTGGTCGT |
Reverse: TTGATTTTGGAGGGATCTCG |
Genotyping of common variations in AKAP2
Statistical analysis
Results
Demographic data
Patients (n = 1254) | Controls (n = 1232) | P | |
---|---|---|---|
Age (years) | 15.4 ± 3.5 | 22.5 ± 8.7 | <0.001 |
Curve magnitude (degrees) | 52.1 ± 12.5 | N/A | N/A |
Year post-menarche (years) | 12.4 ± 1.9 | N/A | N/A |
Body mass index (kg/m2) | 17.9 ± 3.8 | 22.3 ± 5.2 | <0.001 |
Genotyping of rare variation and common variations
SNP | MA | MAF | P | OR (95% CI) | |
---|---|---|---|---|---|
Patients | Controls | ||||
rs7022209 | A | 0.459 | 0.470 | 0.47 | 0.96 (0.85–1.08) |
rs6477728 | G | 0.473 | 0.484 | 0.43 | 0.95 (0.85–1.07) |
rs2769147 | G | 0.422 | 0.428 | 0.67 | 0.98 (0.87–1.10) |
rs2795054 | A | 0.212 | 0.197 | 0.21 | 1.10 (0.95–1.26) |
rs2795055 | G | 0.459 | 0.470 | 0.48 | 0.96 (0.86–1.08) |
rs2182815 | A | 0.266 | 0.276 | 0.42 | 0.95 (0.83–1.08) |
rs1887521 | G | 0.346 | 0.354 | 0.60 | 0.97 (0.86–1.09) |
rs10980040 | A | 0.335 | 0.343 | 0.60 | 0.97 (0.86–1.09) |
rs10980042 | T | 0.331 | 0.341 | 0.45 | 0.95 (0.85–1.08) |
rs10980043 | A | 0.331 | 0.341 | 0.45 | 0.95 (0.85–1.08) |
rs13289532 | C | 0.330 | 0.341 | 0.43 | 0.95 (0.84–1.08) |
rs10759366 | C | 0.317 | 0.324 | 0.63 | 0.97 (0.86–1.10) |
rs10759367 | C | 0.318 | 0.324 | 0.65 | 0.97 (0.86–1.10) |
rs10980055 | G | 0.338 | 0.317 | 0.13 | 1.10 (0.97–1.24) |
rs730973 | A | 0.346 | 0.330 | 0.23 | 1.08 (0.95–1.22) |
rs1327785 | A | 0.336 | 0.346 | 0.46 | 0.96 (0.85–1.08) |
rs10759369 | A | 0.319 | 0.324 | 0.71 | 0.98 (0.86–1.10) |
rs12237683 | T | 0.336 | 0.346 | 0.48 | 0.96 (0.85–1.08) |
rs10980064 | C | 0.318 | 0.324 | 0.62 | 0.97 (0.86–1.10) |
rs3983508 | C | 0.346 | 0.330 | 0.25 | 1.07 (0.95–1.21) |
rs4295727 | T | 0.328 | 0.314 | 0.30 | 1.07 (0.94–1.21) |
rs2795058 | A | 0.273 | 0.285 | 0.37 | 0.94 (0.83–1.07) |
rs7871857 | C | 0.147 | 0.142 | 0.59 | 1.05 (0.89–1.23) |
rs12001151 | C | 0.156 | 0.140 | 0.13 | 1.13 (0.95–1.33) |
rs2418050 | A | 0.483 | 0.476 | 0.63 | 1.03 (0.92–1.15) |
rs7864423 | A | 0.149 | 0.135 | 0.16 | 1.13 (0.96–1.33) |
rs7867595 | A | 0.149 | 0.134 | 0.16 | 1.12 (0.95–1.32) |
rs1125416 | A | 0.147 | 0.142 | 0.57 | 1.05 (0.89–1.23) |
rs2900498 | C | 0.100 | 0.091 | 0.34 | 1.10 (0.90–1.33) |
rs875926 | T | 0.271 | 0.265 | 0.65 | 1.03 (0.91–1.17) |
rs2769151 | T | 0.348 | 0.347 | 0.97 | 1.00 (0.89–1.13) |
rs10816895 | G | 0.255 | 0.251 | 0.78 | 1.02 (0.89–1.16) |
rs913361 | T | 0.256 | 0.267 | 0.41 | 0.95 (0.83–1.08) |
rs17794822 | A | 0.181 | 0.178 | 0.80 | 1.02 (0.88–1.18) |
rs10980086 | C | 0.276 | 0.268 | 0.51 | 1.04 (0.92–1.19) |
rs10980091 | C | 0.468 | 0.454 | 0.34 | 1.06 (0.94–1.19) |
rs12338023 | G | 0.193 | 0.188 | 0.70 | 1.03 (0.89–1.19) |
rs2769143 | C | 0.227 | 0.228 | 0.95 | 1.00 (0.87–1.14) |
rs2769145 | G | 0.087 | 0.084 | 0.72 | 1.04 (0.85–1.27) |
rs17794870 | T | 0.178 | 0.177 | 0.88 | 1.01 (0.87–1.18) |
rs9299178 | G | 0.192 | 0.194 | 0.86 | 0.99 (0.85–1.14) |
rs2479311 | A | 0.238 | 0.239 | 0.99 | 1.00 (0.87–1.14) |
rs10816902 | C | 0.193 | 0.193 | 0.94 | 0.99 (0.86–1.15) |
rs10980097 | C | 0.192 | 0.188 | 0.67 | 1.03 (0.89–1.20) |
rs7044189 | C | 0.364 | 0.351 | 0.35 | 1.06 (0.94–1.19) |
rs13299632 | C | 0.281 | 0.286 | 0.70 | 0.98 (0.86–1.11) |
rs7042517 | T | 0.439 | 0.446 | 0.65 | 0.97 (0.87–1.10) |
rs2479314 | G | 0.306 | 0.316 | 0.44 | 0.95 (0.84–1.08) |
rs16914570 | T | 0.112 | 0.104 | 0.40 | 1.08 (0.90–1.30) |
rs2418060 | A | 0.444 | 0.449 | 0.70 | 0.98 (0.87–1.10) |
rs2418061 | T | 0.441 | 0.447 | 0.66 | 0.97 (0.87–1.09) |
rs7040294 | T | 0.444 | 0.449 | 0.73 | 0.98 (0.87–1.10) |
rs1475433 | T | 0.445 | 0.447 | 0.92 | 0.99 (0.89–1.12) |
rs16914573 | A | 0.111 | 0.102 | 0.35 | 1.09 (0.91–1.31) |
rs13283300 | C | 0.205 | 0.200 | 0.70 | 1.03 (0.89–1.19) |
rs9408826 | A | 0.156 | 0.140 | 0.13 | 1.14 (0.97–1.34) |
rs12237174 | A | 0.252 | 0.239 | 0.31 | 1.07 (0.94–1.22) |
rs10980109 | G | 0.149 | 0.139 | 0.29 | 1.09 (0.93–1.29) |
rs7040787 | A | 0.278 | 0.275 | 0.79 | 1.02 (0.90–1.16) |
rs4978856 | T | 0.239 | 0.249 | 0.40 | 0.94 (0.83–1.08) |
rs7849107 | A | 0.251 | 0.249 | 0.89 | 1.01 (0.88–1.15) |
rs2095094 | C | 0.079 | 0.091 | 0.16 | 0.86 (0.70–1.06) |
rs1981035 | A | 0.238 | 0.249 | 0.37 | 0.94 (0.82–1.08) |
rs1981036 | A | 0.240 | 0.248 | 0.56 | 0.96 (0.84–1.10) |
rs877640 | G | 0.083 | 0.083 | 0.98 | 1.00 (0.81–1.23) |
rs11999319 | G | 0.234 | 0.237 | 0.81 | 0.98 (0.86–1.13) |
rs2277146 | C | 0.453 | 0.444 | 0.57 | 1.03 (0.92–1.16) |
rs10120878 | C | 0.078 | 0.070 | 0.32 | 1.12 (0.90–1.39) |
rs4978862 | T | 0.141 | 0.140 | 0.90 | 1.01 (0.86–1.19) |
rs4978864 | G | 0.413 | 0.418 | 0.75 | 0.98 (0.87–1.10) |
rs4978865 | T | 0.400 | 0.408 | 0.60 | 0.97 (0.86–1.09) |
rs1930249 | G | 0.403 | 0.407 | 0.75 | 0.98 (0.87–1.10) |
rs12683699 | G | 0.228 | 0.234 | 0.62 | 0.97 (0.84–1.11) |
rs10739286 | T | 0.174 | 0.168 | 0.60 | 1.04 (0.89–1.21) |
rs10980133 | T | 0.348 | 0.345 | 0.80 | 1.02 (0.90–1.15) |
rs10816909 | A | 0.111 | 0.103 | 0.38 | 1.09 (0.90–1.31) |
rs4978411 | T | 0.224 | 0.217 | 0.56 | 1.04 (0.91–1.20) |
rs10217743 | A | 0.198 | 0.183 | 0.18 | 1.10 (0.95–1.28) |
rs12000943 | G | 0.344 | 0.343 | 0.95 | 1.00 (0.89–1.13) |
rs10739287 | A | 0.237 | 0.241 | 0.74 | 0.98 (0.85–1.12) |
rs10816913 | T | 0.238 | 0.242 | 0.75 | 0.98 (0.86–1.12) |
rs7864336 | G | 0.455 | 0.444 | 0.48 | 1.04 (0.93–1.17) |
rs260193 | A | 0.367 | 0.358 | 0.51 | 1.04 (0.92–1.17) |
rs7024673 | A | 0.235 | 0.250 | 0.23 | 0.92 (0.81–1.05) |
rs260202 | G | 0.406 | 0.394 | 0.38 | 1.05 (0.94–1.19) |
rs260221 | C | 0.449 | 0.437 | 0.41 | 1.05 (0.94–1.18) |
rs10980164 | T | 0.381 | 0.394 | 0.38 | 0.95 (0.84–1.07) |
rs10980169 | A | 0.063 | 0.078 | 0.05 | 0.80 (0.64–1.00) |
rs2017393 | G | 0.378 | 0.387 | 0.51 | 0.96 (0.85–1.08) |
rs2017392 | G | 0.378 | 0.387 | 0.53 | 0.96 (0.86–1.08) |
rs2017219 | C | 0.389 | 0.395 | 0.68 | 0.98 (0.87–1.10) |
rs541471 | G | 0.119 | 0.126 | 0.45 | 0.93 (0.78–1.11) |
rs545955 | C | 0.456 | 0.437 | 0.21 | 1.08 (0.96–1.21) |
rs552182 | T | 0.119 | 0.128 | 0.36 | 0.92 (0.77–1.10) |
rs539817 | T | 0.448 | 0.433 | 0.32 | 1.06 (0.95–1.19) |
rs475530 | G | 0.449 | 0.431 | 0.23 | 1.07 (0.96–1.21) |
rs487013 | C | 0.485 | 0.464 | 0.14 | 1.09 (0.97–1.22) |
rs491730 | C | 0.110 | 0.120 | 0.29 | 0.91 (0.76–1.09) |
rs10759388 | A | 0.388 | 0.405 | 0.24 | 0.93 (0.83–1.05) |
rs528811 | T | 0.365 | 0.382 | 0.23 | 0.93 (0.83–1.05) |
rs10816924 | A | 0.182 | 0.165 | 0.12 | 1.13 (0.97–1.31) |
rs10980210 | G | 0.286 | 0.307 | 0.10 | 0.90 (0.79–1.02) |
rs7871428 | G | 0.199 | 0.173 | 0.02 | 1.19 (1.02–1.38) |
rs4978870 | A | 0.214 | 0.221 | 0.61 | 0.96 (0.84–1.11) |
rs17806457 | A | 0.205 | 0.208 | 0.81 | 0.98 (0.85–1.13) |
rs2418071 | C | 0.076 | 0.071 | 0.48 | 1.08 (0.87–1.35) |
rs10980217 | C | 0.201 | 0.203 | 0.87 | 0.99 (0.95–1.14) |
rs3739455 | G | 0.173 | 0.176 | 0.80 | 0.98 (0.84–1.14) |
rs16914814 | C | 0.177 | 0.182 | 0.67 | 0.97 (0.83–1.12) |
rs1023180 | A | 0.114 | 0.109 | 0.58 | 1.05 (0.88–1.26) |
rs10980229 | A | 0.417 | 0.408 | 0.54 | 1.04 (0.92–1.17) |
rs10980231 | C | 0.154 | 0.151 | 0.76 | 1.03 (0.87–1.20) |
rs4978877 | G | 0.501 | 0.491 | 0.48 | 1.04 (0.93–1.17) |
rs10980234 | G | 0.287 | 0.279 | 0.56 | 1.04 (0.91–1.18) |
rs10816929 | G | 0.308 | 0.305 | 0.84 | 1.01 (0.89–1.15) |
rs1331310 | C | 0.229 | 0.228 | 0.95 | 1.01 (0.88–1.15) |