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Archives of Virology

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01.11.2013 | Brief Report

Whole-genome sequence analysis of a Korean G11P[25] rotavirus strain identifies several porcine-human reassortant events

verfasst von: Van Thai Than, Jong-Hwa Park, In Sik Chung, Jong Bum Kim, Wonyong Kim

Erschienen in: Archives of Virology | Ausgabe 11/2013

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Abstract

A rare rotavirus, RVA/Human-wt/KOR/CAU12-2/2012/G11P[25], was isolated from a 16-year-old female with fever and diarrhea during the 2012 rotavirus surveillance in South Korea using a cell culture system, and its full genome sequence was determined and analyzed. Strain CAU12-2 exhibited a G11-P[25]-I12-R1-C1-M1-A1-N1-T1-E1-H1 genotype constellation. Phylogenetic analysis of this strain revealed that it is a human-porcine reassortant of two distant relatives of the G11 strains circulating in the world. The VP7 and VP4 genes are most closely related to those of human G11P[25] viruses (Dhaka6, KTM368, and N-38 strains) identified in South Asia, whereas the VP1 gene originated from a porcine G11P[7] virus (YM strain) that was identified in South America. The VP6 gene was found to belong to the new genotype I12. This study indicates that the G11-P[25]-I12 genotype was introduced into the South Korean population by interspecies transmissions of human and animal rotaviruses, followed by multiple reassortment events.

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Araujo EC, Clemens SA, Oliveira CS, Justino MC, Rubio P, Gabbay YB, da Silva VB, Mascarenhas JD, Noronha VL, Clemens R, Gusmao RH, Sanchez N, Monteiro TA, Linhares AC (2007) Safety, immunogenicity, and protective efficacy of two doses of RIX4414 live attenuated human rotavirus vaccine in healthy infants. J Pediatr (Rio J) 83:217–224

Banerjee I, Iturriza-Gomara M, Rajendran P, Primrose B, Ramani S, Gray JJ, Brown DW, Kang G (2007) Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. J Med Virol 79:1768–1774PubMedCrossRef

Banyai K, Esona MD, Kerin TK, Hull JJ, Mijatovic S, Vasconez N, Torres C, de Filippis AM, Foytich KR, Gentsch JR (2009) Molecular characterization of a rare, human-porcine reassortant rotavirus strain, G11P[6], from Ecuador. Arch Virol 154:1823–1829PubMedCrossRef

Breiman RF, Zaman K, Armah G, Sow SO, Anh DD, Victor JC, Hille D, Ciarlet M, Neuzil KM (2012) Analyses of health outcomes from the 5 sites participating in the Africa and Asia clinical efficacy trials of the oral pentavalent rotavirus vaccine. Vaccine 30(Suppl 1):A24–A29PubMedCrossRef

Ciarlet M, Hidalgo M, Gorziglia M, Liprandi F (1994) Characterization of neutralization epitopes on the VP7 surface protein of serotype G11 porcine rotaviruses. J Gen Virol 75:1867–1873PubMedCrossRef

Donato CM, Cannan D, Bogdanovic-Sakran N, Snelling TL, Kirkwood CD (2012) Characterisation of a G9P[8] rotavirus strain identified during a gastroenteritis outbreak in Alice Springs. Australia post Rotarix vaccine introduction. Vaccine 30(Suppl 1):A152–A158PubMedCrossRef

Estes MK, Cohen J (1989) Rotavirus gene structure and function. Microbiol Rev 53:410–449PubMed

Estes MK, Kapikan AZ (2007) Rotaviruses. In: Knipe DM, Howley PM (eds) Fields Virology, 5th edn. Wolters Kluwer Health/Lippincott Williams & Wilkins, Philadelphia, pp 1917–1974

Felsenstein J (1993) PHYLIP (Phylogeny inference package) version 3.5c Department of Genetics, University of Washington

10.

Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373PubMed

11.

Ghosh S, Kobayashi N (2011) Whole-genomic analysis of rotavirus strains: current status and future prospects. Future Microbiol 6:1049–1065PubMedCrossRef

12.

Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY (1990) Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276–282PubMed

13.

Han TH, Kim CH, Chung JY, Park SH, Hwang ES (2010) Genetic characterization of rotavirus in children in South Korea from 2007 to 2009. Arch Virol 155:1663–1673PubMedCrossRef

14.

Hong SK, Lee SG, Lee SA, Kang JH, Lee JH, Kim JH, Kim DS, Kim HM, Jang YT, Ma SH, Kim SY, Paik SY (2007) Characterization of a G11, P[4] strain of human rotavirus isolated in South Korea. J Clin Microbiol 45:3759–3761PubMedCrossRef

15.

Huh JW, Kim WH, Yoon MH, Lim YH (2009) Genotypic distribution of rotavirus strains causing severe gastroenteritis in Gyeonggi province, South Korea, from 2003 to 2005. Arch Virol 154:167–170PubMedCrossRef

16.

Jeong HS, Lee KB, Jeong AY, Jo MY, Jung SY, Ahn JH, Jee Y, Kim J, Cheon DS (2011) Genotypes of the circulating rotavirus strains in the seven prevaccine seasons from September 2000 to August 2007 in South Korea. Clin Microbiol Infect 17:232–235PubMedCrossRef

17.

Jukes TH, Cantor C (1969) Evolution of protein molecules. Mammalian Protein Metabolism Academic Press, New York, pp 21–132

18.

Kang JO, Kilgore P, Kim JS, Nyambat B, Kim J, Suh HS, Yoon Y, Jang S, Chang C, Choi S, Kim MN, Gentsch J, Bresee J, Glass R (2005) Molecular epidemiological profile of rotavirus in South Korea, July 2002 through June 2003: emergence of G4P[6] and G9P[8] strains. J Infect Dis 192(Suppl 1):S57–S63PubMedCrossRef

19.

Kim JS, Kang JO, Cho SC, Jang YT, Min SA, Park TH, Nyambat B, Jo DS, Gentsch J, Bresee JS, Mast TC, Kilgore PE (2005) Epidemiological profile of rotavirus infection in the Republic of Korea: results from prospective surveillance in the Jeongeub District, 1 July 2002 through 30 June 2004. J Infect Dis 192(Suppl 1):S49–S56PubMedCrossRef

20.

Kim KH, Suh IS, Kim JM, Kim CW, Cho YJ (1989) Etiology of childhood diarrhea in Korea. J Clin Microbiol 27:1192–1196PubMed

21.

Kim KH, Yang JM, Joo SI, Cho YG, Glass RI, Cho YJ (1990) Importance of rotavirus and adenovirus types 40 and 41 in acute gastroenteritis in Korean children. J Clin Microbiol 28:2279–2284PubMed

22.

Le VP, Kim JY, Cho SL, Nam SW, Lim I, Lee HJ, Kim K, Chung SI, Song W, Lee KM, Rhee MS, Lee JS, Kim W (2008) Detection of unusual rotavirus genotypes G8P[8] and G12P[6] in South Korea. J Med Virol 80:175–182PubMedCrossRef

23.

Lee JM, Kim HY, Lee MY, Lee KB, Cheon DS, Jee YM (2007) The prevalence and genotypic distribution of group A rotavirus detected from patients with acute gastroenteritis patients in Incheon. J Bacteriol Virol 37:39–45CrossRef

24.

Lee SY, Hong SK, Lee SG, Suh CI, Park SW, Lee JH, Kim JH, Kim DS, Kim HM, Jang YT, Ma SH, Kim SY, Sohn YS, Kang JH, Paik SY (2009) Human rotavirus genotypes in hospitalized children, South Korea, April 2005 to March 2007. Vaccine 27(Suppl 5):F97–F101PubMedCrossRef

25.

Martella V, Banyai K, Matthijnssens J, Buonavoglia C, Ciarlet M (2010) Zoonotic aspects of rotaviruses. Vet Microbiol 140:246–255PubMedCrossRef

26.

Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gomara M, Maes P, Patton JT, Rahman M, Van Ranst M (2008) Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219PubMedCrossRef

27.

Matthijnssens J, Ciarlet M, Rahman M, Attoui H, Banyai K, Estes MK, Gentsch JR, Iturriza-Gomara M, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Patton JT, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Desselberger U, Van Ranst M (2008) Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 153:1621–1629PubMedCrossRef

28.

Matthijnssens J, Rahman M, Ciarlet M, Zeller M, Heylen E, Nakagomi T, Uchida R, Hassan Z, Azim T, Nakagomi O, Van Ranst M (2010) Reassortment of human rotavirus gene segments into G11 rotavirus strains. Emerg Infect Dis 16:625–630PubMedCrossRef

29.

Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Banyai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gomara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreno V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M (2011) Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397–1413PubMedCrossRef

30.

Matthijnssens J, De Grazia S, Piessens J, Heylen E, Zeller M, Giammanco GM, Banyai K, Buonavoglia C, Ciarlet M, Martella V, Van Ranst M (2011) Multiple reassortment and interspecies transmission events contribute to the diversity of feline, canine and feline/canine-like human group A rotavirus strains. Infect Genet Evol 11:1396–1406PubMedCrossRef

31.

Matthijnssens J, Otto PH, Ciarlet M, Desselberger U, Van Ranst M, Johne R (2012) VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 157:1177–1182PubMedCrossRef

32.

Matthijnssens J, Van Ranst M (2012) Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2:426–433PubMedCrossRef

33.

McDonald SM, Matthijnssens J, McAllen JK, Hine E, Overton L, Wang S, Lemey P, Zeller M, Van Ranst M, Spiro DJ, Patton JT (2009) Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations. PLoS Pathog 5:e1000634PubMedCrossRef

34.

Moon SS, Green YS, Song JW, Ahn CN, Kim H, Park KS, Song KJ, Lee JH, Baek LJ (2007) Genetic distribution of group A human rotavirus types isolated in Gyunggi province of Korea, 1999–2002. J Clin Virol 38:57–63PubMedCrossRef

35.

Mullick S, Mukherjee A, Ghosh S, Pazhani GP, Sur D, Manna B, Nataro JP, Levine MM, Ramamurthy T, Chawla-Sarkar M (2013) Genomic analysis of human rotavirus strains G6P[14] and G11P[25] isolated from Kolkata in 2009 reveals interspecies transmission and complex reassortment events. Infect Genet Evol 14:15–21PubMedCrossRef

36.

Park S, Oh S, Lee J, Park G, Choi S, Chae Y, Kim H (2011) Genotypes of rotavirus associated with acute gastroenteritis in Seoul, Korea. Microbiol Immunol 55:641–644PubMedCrossRef

37.

Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Van Ranst M (2005) Characterization of a novel P[25], G11 human group a rotavirus. J Clin Microbiol 43:3208–3212PubMedCrossRef

38.

Rahman M, Sultana R, Ahmed G, Nahar S, Hassan ZM, Saiada F, Podder G, Faruque AS, Siddique AK, Sack DA, Matthijnssens J, Van Ranst M, Azim T (2007) Prevalence of G2P[4] and G12P[6] rotavirus, Bangladesh. Emerg Infect Dis 13:18–24PubMedCrossRef

39.

Ruiz AM, Lopez IV, Lopez S, Espejo RT, Arias CF (1988) Molecular and antigenic characterization of porcine rotavirus YM, a possible new rotavirus serotype. J Virol 62:4331–4336PubMed

40.

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed

41.

Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56PubMedCrossRef

42.

Seo JK, Sim JG (2000) Overview of rotavirus infections in Korea. Pediatr Int 42:406–410PubMedCrossRef

43.

Shim JO, Baek IH, Le VP, Ko EM, Seok WS, Uh Y, Kim JK, Ahn SY, Lee HS, Ryoo E, Shim SY, Song W, Lim I, Kim W (2011) Molecular characterization of rotavirus diarrhea among children in South Korea: detection of an unusual G11 strain. Arch Virol 156:887–892PubMedCrossRef

44.

Song MO, Kim KJ, Chung SI, Lim I, Kang SY, An CN, Kim W (2003) Distribution of human group a rotavirus VP7 and VP4 types circulating in Seoul, Korea between 1998 and 2000. J Med Virol 70:324–328PubMedCrossRef

45.

Tate JE, Burton AH, Boschi-Pinto C, Steele AD, Duque J, Parashar UD (2012) 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis 12:136–141PubMedCrossRef

46.

Than VT, Le VP, Lim I, Kim W (2011) Complete genomic characterization of cell culture adapted human G12P[6] rotaviruses isolated from South Korea. Virus Genes 42:317–322PubMedCrossRef

47.

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882PubMedCrossRef

48.

Uchida R, Pandey BD, Sherchand JB, Ahmed K, Yokoo M, Nakagomi T, Cuevas LE, Cunliffe NA, Hart CA, Nakagomi O (2006) Molecular epidemiology of rotavirus diarrhea among children and adults in Nepal: detection of G12 strains with P[6] or P[8] and a G11P[25] strain. J Clin Microbiol 44:3499–3505PubMedCrossRef

Titel: Whole-genome sequence analysis of a Korean G11P[25] rotavirus strain identifies several porcine-human reassortant events
verfasst von: Van Thai Than
Jong-Hwa Park
In Sik Chung
Jong Bum Kim
Wonyong Kim
Publikationsdatum: 01.11.2013
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 11/2013
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-013-1720-9

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