Background
Biomarker2 | Clinical outcome | Method of detection | N. of cases/%/type of modulation | Annotation |
---|---|---|---|---|
ADAM17
| Lymph nodal metastasis/Loco-regional relapse | IHC/WB | 50/46/Up | None |
CD44
| OS/DFS | IHC | 138/59/Down | None |
E-cadherin
| Recurrence/OS | IHC | 50/20/Up 112/59/Down | None |
EGFR
| OS | IHC | 109/73/Up 59/58/Up | None |
Estrogen-R2
| OS | IHC/nPCR + sequencing | 67/51/Up | Laryngeal/hypopharingeal cancer |
FHIT
| OS/DFS | IHC | 53/61/Down | None |
GLUT1
| OS | IHC | 40/26/up | Poor radiation response |
HIF1A
| OS/DFS | IHC | 85/63/Down | None |
Keratin-18
| OS | IHC | 308/54/Up | None |
Keratin-8
| OS | IHC | 308/54/Up | None |
Laminin γ2 | DSS | DNA Microarray | 119/NS/Up | None |
MCM5
| OS | IHC | 97/61/Up | None |
MET
| OS | IHC | 69/82/Up | None |
Moesin
| OS | IHC | 103/NS/Up | Cytoplasmic expression pattern |
Mucin-1
| OS/DFS/Lymphnodal metastasis | IHC | 206/39/Up | Within 5-years follow-up |
Mucin-4
| OS/DFS/Lymphnodal metastasis/Loco-regional relapse | IHC | 150/41/Up | Within 5-years follow-up |
p21
| OS | IHC | 192/71/Down | None |
p27
| DFS | IHC | 192/80/Down | Only in patients with lymphnodal infiltration |
p57
| OS | IHC | 67/87/Down | None |
p63
| OS | IHC | 62/NS/Up | None |
P-cadherin
| Disease recurrence/Loco-regional relapse/OS | IHC | 50/20/Down 67/45/Down 108/16/Down | None |
Podoplanin
| DSS | IHC | 35/56/Up | None |
Rb
| DFS | IHC | 220/49/Down | Only in p53+/pRb− patients |
RUNX3
| OS | IHC/WB | 108/46/Down | None |
S100A2
| DFS/Cervical metastasis | RT-PCR + seq/IHC | 135/26/Down 52/NS/Down | Nuclear expression pattern |
SPARC
| OS/DFI | DNA Microarray/IHC | 62/NS/Up | None |
STAT1
| OS | IHC | 89/NS/Up | None |
Survivin 3α | OS | RT-PCR | 97/NS/Up | Only in lymphnodes |
TERT
| OS | IHC | 62/NS/Up | None |
Ezrin | OS | IHC | 47/85/Up | Cytoplasmic expression pattern |
Methods
Patients
RNA extraction and qPCR
Tissue microarray (TMA) construction
Immunohistochemistry
Statistical and bioinformatic analyses
Results
Transcriptional profiles of PGs in primary oral cavity HNSCC lesions
Immunolocalization of PGs in oral cavity HNSCC lesions
PG | Tumor cell positivity1 | Overall staining intensity2 | Subcellular localization3 | Stromal expression | ||||
---|---|---|---|---|---|---|---|---|
GPC1 | - | (27.5) | - | (27.6) | Membrane | - | - | (92.0) |
+ | (29.2) | + | (33.1) | Cytoplasmic | - | + | (6.7) | |
++ | (33.1) | ++ | (30.1) | Both | (72.4) | ++ | (0.6) | |
+++ | (7.4) | +++ | (6.7) | +++ | (0.6) | |||
++++ | (2.5) | ++++ | (2.5) | ++++ | - | |||
GPC3 | - | (81.6) | - | (81.6) | Membrane | - | - | (100.0) |
+ | (14.1) | + | (14.1) | Cytoplasmic | - | + | - | |
++ | (3.1) | ++ | (4.3) | Both | (18.4) | ++ | - | |
+++ | (1.2) | +++ | - | +++ | - | |||
++++ | - | ++++ | - | ++++ | - | |||
GPC4 | - | (58.9) | - | (59.5) | Membrane | - | - | (81.0) |
+ | (20.9) | + | (14.1) | Cytoplasmic | (40.5) | + | (5.5) | |
++ | (19.0) | ++ | (25.8) | Both | - | ++ | (12.9) | |
+++ | (1.2) | +++ | (0.6) | +++ | (0.6) | |||
++++ | - | ++++ | - | ++++ | - | |||
GPC6 | - | (62.2) | - | (62.6) | Membrane | - | - | (90.2) |
+ | (30.1) | + | (31.9) | Cytoplasmic | (37.4) | + | (9.8) | |
++ | (7.4) | ++ | (5.5) | Both | - | ++ | - | |
+++ | - | +++ | - | +++ | - | |||
++++ | - | ++++ | - | ++++ | - | |||
SDC1 | - | (8.6) | - | (8.6) | Membrane | (42.9) | - | (79.1) |
+ | (31.3) | + | (25.8) | Cytoplasmic | (37.4) | + | (9.2) | |
++ | (33.7) | ++ | (50.3) | Both | (10.4) | ++ | (10.4) | |
+++ | (22.1) | +++ | (10.4) | +++ | (1.2) | |||
++++ | (4.3) | ++++ | (4.9) | ++++ | - | |||
SDC2 | - | (88.3) | - | (88.3) | Membrane | (1.8) | - | (26.4) |
+ | (6.7) | + | (8.0) | Cytoplasmic | (8.6) | + | (20.2) | |
++ | (4.3) | ++ | (3.1) | Both | - | ++ | (25.8) | |
+++ | (0.6) | +++ | (0.6) | +++ | (21.5) | |||
++++ | - | ++++ | - | ++++ | (6.1) | |||
SDC3 | - | (65.0) | - | (65.0) | Membrane | - | - | (100.0) |
+ | (27.0) | + | (28.2) | Cytoplasmic | - | + | - | |
++ | (6.1) | ++ | (6.7) | Both | (34.4) | ++ | - | |
+++ | (1.8) | +++ | - | +++ | - | |||
++++ | - | ++++ | - | ++++ | - | |||
SDC4 | - | (80.4) | - | (80.4) | Membrane | - | - | (100.0) |
+ | (16.0) | + | (19.6) | Cytoplasmic | - | + | - | |
++ | (3.7) | ++ | - | Both | (17.8) | ++ | - | |
+++ | - | +++ | - | +++ | - | |||
++++ | - | ++++ | - | ++++ | - | |||
NG2/CSPG4 | - | (34.2) | - | (34.2) | Membrane | (62.6) | - | (96.7) |
+ | (38.8) | + | (36.8) | Cytoplasmic | - | + | (3.3) | |
++ | (21.7) | ++ | (19.7) | Both | - | ++ | - | |
+++ | (2.6) | +++ | (7.2) | +++ | - | |||
++++ | (2.6) | ++++ | (2.0) | ++++ | - |
Altered expression of discrete PGs correlates with disease outcome
Prognostic indicator/PG | N.of cases | Clinical outcomes | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Loco-regional recurrence | Lymphnodal metastasis | Distant metastasis | Disease-related death | Any of the clinical outcomes1 | |||||||||
% cases |
p value
| % cases |
p value
| % cases |
p value
| % cases |
p value
| % cases |
p value
| ||||
Prognostic indicator
| |||||||||||||
Sex | Male | 99 | 14.1 | 0.342 | 15.2 |
0.043
| 10.1 | 0.847 | 22.2 | 0.155 | 36.4 | 0.094 | |
Female | 74 | 7.0 | 5.4 | 9.5 | 13.5 | 24.3 | |||||||
Age | ≤45 yrs | 17 | 11.8 | 0.689 | 11.8 | 0.964 | 0.0 | - | 5.9 | 0.146 | 17.6 | 0.184 | |
>45 yrs | 156 | 12.2 | 10.9 | 10.9 | 19.9 | 32.7 | |||||||
Smoking | No | 66 | 13.6 | 0.689 | 9.1 | 0.466 | 9.1 | 0.718 | 12.1 | 0.109 | 25.8 | 0.253 | |
Yes | 105 | 11.4 | 12.4 | 10.5 | 21.9 | 34.3 | |||||||
Alcohol2 | No | 83 | 10.8 | 0.521 | 8.4 | 0.231 | 4.8 |
0.026
| 6.0 |
<0.001
| 21.7 |
0.012
| |
Yes | 88 | 13.6 | 13.6 | 14.8 | 29.5 | 39.8 | |||||||
Familial cancer history | No | 144 | 12.5 | 0.732 | 10.4 | 0.615 | 9.7 | 0.880 | 18.8 | 0.876 | 31.3 | 0.994 | |
Yes | 27 | 11.1 | 14.8 | 11.1 | 18.5 | 33.3 | |||||||
Precancerous lesions | No | 121 | 12.4 | 0.869 | 5.8 |
0.003
| 9.9 | 0.970 | 18.2 | 0.869 | 28.1 | 0.305 | |
Yes | 51 | 11.8 | 21.6 | 9.8 | 19.6 | 37.3 | |||||||
Tumor site | OC | 156 | 12.2 | 0.530 | 11.5 | 0.204 | 10.3 | 0.776 | 17.9 | 0.858 | 31.4 | 0.399 | |
OP | 14 | 7.1 | 0.0 | 7.1 | 21.4 | 21.4 | |||||||
OC+OP | 3 | 33.3 | 33.3 | 0.0 | 33.3 | 66.7 | |||||||
T classification | T1 | 51 | 3.9 |
0.007
| 7.8 | 0.326 | 2.0 | 0.073 | 5.9 |
0.038
| 17.6 |
0.018
| |
T2 | 60 | 8.3 | 8.3 | 16.7 | 21.7 | 30.0 | |||||||
T3 | 17 | 23.5 | 17.6 | 5.9 | 23.5 | 47.1 | |||||||
T4 | 45 | 22.2 | 15.6 | 11.1 | 26.7 | 42.2 | |||||||
T1-T2 | 111 | 6.3 |
0.001
| 8.1 | 0.065 | 9.9 | 0.957 | 14.4 |
0.043
| 24.3 |
0.005
| ||
T3-T4 | 62 | 22.6 | 16.1 | 9.7 | 25.8 | 43.5 | |||||||
N classification | Negative | 97 | 9.3 | 0.079 | 5.2 |
0.001
| 5.2 |
0.016
| 9.3 |
<0.001
| 19.6 |
<0.001
| |
Positive | 76 | 15.8 | 18.4 | 15.8 | 30.3 | 46.1 | |||||||
Differentiation Degree | Well | 20 | 15.0 | 0.441 | 0.0 | 0.223 | 5.0 | 0.392 | 15.0 | 0.952 | 20.0 | 0.44 | |
Moderate | 50 | 16.0 | 12.0 | 14.0 | 18.0 | 36.0 | |||||||
Poor | 78 | 7.7 | 12.8 | 7.7 | 16.7 | 30.8 | |||||||
Radiotherapy | No | 83 | 8.4 | 0.082 | 4.8 |
0.005
| 3.6 |
0.007
| 8.4 |
<0.001
| 20.5 |
0.002
| |
Yes | 90 | 15.6 | 16.7 | 15.6 | 27.8 | 41.1 | |||||||
PG (mRNA)
3
| |||||||||||||
SDC1 | ↓ / = | 61 | 11.5 | 0.553 | 6.6 | 0.396 | 4.9 |
0.016
| 11.5 |
0.036
| 21.3 |
0.013
| |
↑ | 58 | 13.8 | 10.3 | 19.0 | 25.9 | 41.4 | |||||||
SDC2 | ↓ / = | 19 | 5.3 | 0.253 | 5.3 | 0.519 | 5.3 | 0.329 | 10.5 | 0.314 | 15.8 | 0.104 | |
↑ | 100 | 14.0 | 9.0 | 13.0 | 20.0 | 34.0 | |||||||
SDC3 | ↓ / = | 24 | 8.3 | 0.405 | 8.3 | 0.896 | 4.2 | 0.193 | 20.8 | 0.855 | 25.0 | 0.352 | |
↑ | 95 | 13.7 | 8.4 | 13.7 | 17.9 | 32.6 | |||||||
SDC4 | ↓ / = | 19 | 5.3 | 0.253 | 5.3 | 0.519 | 5.3 | 0.329 | 15.8 | 0.780 | 26.3 | 0.601 | |
↑ | 100 | 14.0 | 9.0 | 13.0 | 19.0 | 32.0 | |||||||
GPC1 | = | 62 | 12.9 | 0.803 | 6.5 | 0.502 | 12.9 | 0.668 | 17.7 | 0.940 | 32.3 | 0.625 | |
↓ / ↑ | 57 | 12.3 | 10.5 | 10.5 | 19.3 | 29.8 | |||||||
GPC2 | = | 76 | 10.5 | 0.393 | 6.6 | 0.363 | 10.5 | 0.596 | 21.1 | 0.335 | 27.6 | 0.307 | |
De novo
| 43 | 16.3 | 11.6 | 14.0 | 14.0 | 37.2 | |||||||
GPC3 | ↓ | 26 | 7.7 | 0.437 | 0.0 | 0.219 | 11.5 | 0.378 | 11.5 | 0.303 | 23.1 | 0.624 | |
= | 25 | 20.0 | 12.0 | 4.0 | 12.0 | 32.0 | |||||||
↑ | 68 | 11.8 | 10.3 | 14.7 | 23.5 | 33.8 | |||||||
GPC4 | = | 81 | 11.1 | 0.598 | 7.4 | 0.647 | 13.6 | 0.365 | 21.0 | 0.308 | 33.3 | 0.348 | |
↓ / ↑ | 38 | 15.8 | 10.5 | 7.9 | 13.2 | 26.3 | |||||||
GPC5 | = | 33 | 12.1 | 0.995 | 9.1 | 0.851 | 6.1 | 0.241 | 15.2 | 0.609 | 30.3 | 0.986 | |
De novo
| 86 | 12.8 | 8.1 | 14.0 | 19.8 | 31.4 | |||||||
GPC6 | ↓ | 36 | 19.4 | 0.351 | 8.3 | 0.994 | 8.3 | 0.495 | 16.7 | 0.838 | 36.1 | 0.824 | |
= | 24 | 8.3 | 8.3 | 8.3 | 16.7 | 29.2 | |||||||
↑ | 59 | 10.2 | 8.5 | 15.3 | 20.3 | 28.8 | |||||||
NG2/CSPG4 | = | 34 | 2.9 |
0.029
| 8.8 | 0.914 | 8.8 | 0.487 | 14.7 | 0.401 | 20.6 | 0.077 | |
De novo
| 85 | 16.5 | 8.2 | 12.9 | 20.0 | 35.3 | |||||||
PG (Protein)
4
| |||||||||||||
SDC1 Tumor cells | Negative | 14 | 7.1 | 0.447 | 21.4 | 0.312 | 7.1 | 0.769 | 7.1 | 0.269 | 35.7 | 0.947 | |
Positive | 149 | 13.4 | 10.7 | 9.4 | 19.5 | 31.5 | |||||||
Stroma | Negative | 129 | 13.2 | 0.962 | 11.6 | 0.812 | 9.3 | 0.998 | 17.1 | 0.294 | 31.0 | 0.429 | |
Positive | 34 | 11.8 | 11.8 | 8.8 | 23.5 | 35.3 | |||||||
SDC2 Tumor cells | Negative | 143 | 13.3 | 0.783 | 11.9 | 0.875 | 8.4 | 0.303 | 18.9 | 0.792 | 30.8 | 0.385 | |
Positive | 19 | 10.5 | 10.5 | 15.8 | 15.8 | 42.1 | |||||||
Stroma | Negative | 43 | 9.3 | 0.277 | 2.3 |
0.015
| 2.3 | 0.062 | 2.3 |
0.001
| 14.0 |
0.002
| |
Positive | 120 | 14.2 | 15.0 | 11.7 | 24.2 | 38.3 | |||||||
SDC3 Tumor cells | Negative | 106 | 13.2 | 0.923 | 12.3 | 0.793 | 8.5 | 0.655 | 17.9 | 0.758 | 30.2 | 0.575 | |
Positive | 56 | 12.5 | 10.7 | 10.7 | 19.6 | 35.7 | |||||||
SDC4 Tumor cells | Negative | 131 | 15.3 | 0.071 | 13.0 | 0.329 | 9.2 | 0.957 | 17.6 | 0.588 | 32.8 | 0.649 | |
Positive | 32 | 3.1 | 6.3 | 9.4 | 21.9 | 28.1 | |||||||
GPC1 Tumor cells | Negative | 44 | 11.4 | 0.653 | 15.9 | 0.340 | 4.4 | 0.214 | 15.6 | 0.602 | 31.8 | 0.825 | |
Positive | 108 | 13.6 | 10.2 | 10.7 | 18.9 | 32.2 | |||||||
Stroma | Negative | 149 | 11.4 |
0.007
| 12.1 | 0.884 | 8.4 | 0.319 | 16.8 |
0.012
| 30.9 | 0.104 | |
Positive | 13 | 30.8 | 7.7 | 15.4 | 38.5 | 46.2 | |||||||
GPC3 Tumor cells | Negative | 133 | 12.8 | 0.805 | 12.0 | 0.841 | 9.6 | 0.584 | 18.4 | 0.834 | 33.1 | 0.605 | |
Positive | 30 | 13.3 | 10.0 | 6.3 | 15.6 | 26.7 | |||||||
GPC4 Tumor cells | Negative | 96 | 13.5 | 0.969 | 10.2 | 0.493 | 9.2 | 0.928 | 17.3 | 0.716 | 33.3 | 0.794 | |
Positive | 66 | 12.1 | 13.0 | 8.7 | 18.8 | 30.3 | |||||||
Stroma | Negative | 131 | 13.0 | 0.860 | 11.5 | 0.692 | 9.2 | 0.900 | 18.3 | 0.771 | 32.8 | 0.810 | |
Positive | 31 | 12.9 | 12.9 | 9.7 | 19.4 | 29.0 | |||||||
GPC6 Tumor cells | Negative | 101 | 12.9 | 0.860 | 6.9 |
0.010
| 5.9 | 0.052 | 15.8 | 0.222 | 27.7 | 0.102 | |
Positive | 61 | 13.1 | 19.7 | 14.8 | 23.0 | 39.3 | |||||||
Stroma | Negative | 146 | 11.6 | 0.058 | 12.3 | 0.599 | 10.3 | - | 18.5 | 0.844 | 32.2 | 0.828 | |
Positive | 16 | 25.0 | 6.3 | 0.0 | 18.8 | 31.3 | |||||||
NG2/CSPG4 Tumor cells | Negative | 52 | 15.4 | 0.665 | 9.6 | 0.406 | 9.6 | 0.923 | 17.3 | 0.563 | 34.6 | 0.967 | |
Positive | 100 | 12.0 | 14.0 | 10.0 | 21.0 | 33.0 | |||||||
T group/NG2/CSPG4 mRNA5 | T1-T2/= | 21 | 0 |
<0.001
| |||||||||
T1-T2 / De novo | 49 | 6.1 | |||||||||||
T3-T4/= | 13 | 7.7 | |||||||||||
T3-T4/De novo | 36 | 30.6 | |||||||||||
Precancerous lesions/SDC2 stroma | -/- | 29 | 0 |
0.001
| |||||||||
-/+ | 84 | 8.3 | |||||||||||
+/- | 14 | 7.1 | |||||||||||
+/+ | 35 | 28.6 | |||||||||||
N status6/SDC1 mRNA | Negative/↓/= | 31 | 0 |
0.004
| |||||||||
Negative/↑ | 30 | 10.0 | |||||||||||
Positive/↓/= | 30 | 10.0 | |||||||||||
Positive/↑ | 28 | 28.6 | |||||||||||
N status/SDC2 stroma | -/- | 33 | 0 |
<0.001
| |||||||||
-/+ | 57 | 14.0 | |||||||||||
+/- | 10 | 10.0 | |||||||||||
+/+ | 63 | 33.3 | |||||||||||
N status/SDC1 mRNA | Negative/↓/= | 31 | 3.2 |
<0.001
| |||||||||
Negative/↑ | 57 | 33.3 | |||||||||||
Positive/↓/= | 10 | 40.0 | |||||||||||
Positive/↑ | 63 | 50.0 | |||||||||||
PGs pattern | |||||||||||||
SDC1 mRNA ↑ NG2/CSPG4 mRNA de novo + SDC2 stroma | Yes | 36 | 16.7 | 0.271 | 11.1 | 0.405 | 25 |
<0.001
| 33.3 |
0.002
| 50 |
<0.001
| |
No | 73 | 12.3 | 8.2 | 4.1 | 11 | 23.3 |
Prognostic indicator/PG | Estimate1(95% CI) | SE2 |
p value
3
| HR4 | Clinical outcome |
---|---|---|---|---|---|
T classification | |||||
T25 | 0.359 (0.153/0.565) | 0.105 | 0,012 | 1.432 | Loco-regional relapse |
T3 | 1.857 (1.556/2.158) | 0.153 | 6.404 | ||
T4 | 2.160 (1.956/2.364) | 0.104 | 8.671 | ||
T3-T4 vs T1-T2 | 1.850 (1.691/2.009) | 0.081 | 0.001 | 6.360 | Loco-regional relapse |
NG2/CSPG4 mRNA6 | |||||
De novo expression vs no expression | 1.911 (1.735/2.087) | 0.090 | 0.017 | 6.760 | Loco-regional relapse |
Precancerous lesions | |||||
Presence vs Absence | 1.328 (1.184/1.471) | 0.073 | 0.005 | 3.773 | Lymphnodal metastases |
SDC2 stroma | |||||
Positive vs Negative | 2.035 (1.885/2.184) | 0.076 | 0.007 | 7.652 | Lymphnodal metastases |
SDC2 stroma | |||||
Positive vs Negative | 2.160 (2.022/2.298) | 0.070 | 0.003 | 8.671 | Disease-related deaths |
N classification | |||||
Positive vs Negative | 1.477 (1.326/1.628) | 0.077 | 0.012 | 4.380 | Distant metastasis |
N classification | |||||
Positive vs Negative | 1.089 (0.967/1.211) | 0.062 | 0.005 | 2.971 | Disease-related deaths |
N classification | |||||
Positive vs Negative | 1.164 (1.003/1.325) | 0.082 | <0.001 | 3.203 | Any of the clinical outcomes7 |
SDC1 mRNA | |||||
↓ /= vs ↑ | −1.460 (−1.612/-1.309) | 0.077 | 0.013 | 0.232 | Distant metastasis |
SDC1 mRNA | |||||
↓ /= vs ↑ | −0.845 (−1.007/-0.684) | 0.082 | 0.012 | 0.429 | Any of the clinical outcomes |
SDC1 mRNA up-regulation + NG2/CSPG4 mRNA de novo expression + SDC2 stroma | |||||
Single condition vs combination of all 3 conditions8 | −1.924 (−2.088/-1.760) | 0.084 | 0.002 | 0.146 | Distant metastasis |
−1.302 (−1.459/-1.146) | 0.080 | 0.004 | 0.272 | Disease-related deaths | |
−1.014 (−1.194/-0.833) | 0.092 | 0.003 | 0.363 | Any of the clinical outcomes |