VCP/p97 inhibitor CB-5083 modulates muscle pathology in a mouse model of VCP inclusion body myopathy

We first analyzed CB-5083’s dose–response in cellular models of VCP disease, namely patient-derived myoblast cells carrying the VCP p.R93C and p.R155H variants. These studies also served to investigate the acute effects of CB-5083 treatment. We first validated the control and patient cells as myoblasts with their strong desmin positive signals and confirmed the pathology of the patient myoblasts (Fig. 1A). TDP-43 was highly expressed in the nucleus of both cell lines, however, cytoplasmic TDP-43 was found only in the VCP disease patient-derived myoblasts in 2% to 15% of the cells (Fig. 1A, Additional file 1: Fig. S1C). By using cytoplasmic-nuclear fractionation and immunoblotting, we confirmed that TDP-43 was slightly elevated in the cytoplasmic compartment of VCP-mutant patient derived myoblasts (Fig. 1B). Because of the variability between the two patient-derived myoblasts, the cytoplasmic signals observed in patient-derived myoblasts were not significantly different from the control myoblasts statistically (Additional file 1: Fig. S1A, C), albeit the cytoplasmic TDP-43 levels were increased and were only detected in the patient myoblasts (Additional file 1: Fig. S1C). It is plausible that the variability of TDP-43 cytoplasmic signals can be due to potential disease state and the age of the patients. Autophagy markers p62 were also elevated in the cytoplasmic fraction of patient myoblasts (Fig. 1B), as observed in patient muscle. Interestingly, there was a trend toward increased LC 3II/I ratio (Additional file 1: Fig. S1B). We speculate that the patient-derived myoblasts could display arrested autophagy. Altogether, these results confirmed that our primary patient-derived myoblasts harbor the TDP-43 phenotype and are a useful model of the disease. No differences were noted in the expression level of mitofusin between patient and control myoblasts (Fig. 1B).

We next examined the effects of CB-5083 on these patient myoblasts at doses ranging from 50 to 300 nM for 5 consecutive days. Both control and patient-derived myoblasts tolerated CB-5083 well up to 300 nM dosage with equally high survival rates demonstrated by MTT assay (Fig. 1C). Upon VCP inhibition by CB-5083, we observed a significant increase in levels of MFN2 in the myoblasts (Fig. 1D, F). This is in agreement with published data showing that VCP facilitates the degradation of mitofusin [18]. Interestingly, when we treated the patient-derived myoblasts with 75 nM of CB-5083 for 5 days, followed by collecting the nuclear and the cytoplasmic fraction to test for TDP-43, we did not observe differences upon treatment (Additional file 1: Fig. S1D, E). We speculate a 5-day treatment of CB-5083 might be too short to reveal any pathological amelioration in TDP-43 levels. VCP inhibition by CB-5083 and other competitive inhibitors has been shown to modulate autophagy by either activating autophagy [26, 27] or reducing autophagasome formation [28]. Here, we observed an increase in the expression of autophagic markers p62 and LC3I/II, while levels of VCP, and the lysosomal damage marker TFEB were not altered (Fig. 1E, F). These data suggested a modulatory effect of CB-5083 at these doses in multiple cellular pathways. In view of the observed benefits in a drosophila model of VCP disease [18] and the safety of CB5083 on the myoblasts, we proceeded to treatment of the murine model.

Next, we utilized the knock-in mouse model of VCP disease harboring the most commonly found disease-associated mutation, VCP R155H, for our in vivo studies [24, 29]. The heterozygous mice develop progressive muscle weakness at around 12 months, accompanied by cytoplasmic TDP-43 translocation and elevated ubiquitin levels at 15 months of age [30]. We first determined the daily maximum tolerated dosage (MTD) of CB-5083 by administering the drug to VCP^R155H/+ mice, through daily oral gavage. We found a reduction in body weight when mice were treated with a dose of 25 mg/kg of CB-5083 for 2 weeks (Fig. 2A). However, 15 mg/kg of CB-5083 did not alter mouse body weight compared to the vehicle-treated group. We, therefore, defined 15 mg/kg of daily CB-5083 as a safe and tolerable regimen in these mice.

We next utilized the homozygous VCP^R155H/R155H mice for rapid in vivo testing of CB-5083 efficacy. The homozygous VCP^R155H/R155H mice typically die before weaning age when maintained on a normal chow diet [31]. However, a continuous lipid-enriched high-fat diet starting from the prenatal period and continued after birth partially reverses lethality in these mice. Roughly 50% of VCP^R155H/R155H mice fed on the high-fat diet have a normal life span [31]. Crucially with respect to our current study, these mice also display the typical muscle pathology starting at 3-weeks of age, and muscle weakness starting at 2 months [31], thus making these mice an accelerated disease model of VCP human myopathy [31].

To study safety and efficacy of CB-5083, we first treated the VCP^R155H/R155H mice for 5 months starting at 2-months of age. A steady increase in body weight and normal end-point organ weight were observed in both vehicle and CB-5083-treated groups (Fig. 2B, C), indicating that daily CB-5083 (15 mg/kg) administration was also well-tolerated in the young VCP^R155H/R155H mice. Additionally, the results obtained from safety labs analyzing end-point serum samples from CB-5083-treated and vehicle-treated VCP^R155H/R155H mice, did not reveal an increase in liver enzymes, such as aspartate aminotransferase (AST) and alanine aminotransferase (ALT). In fact, AST level was significantly reduced with CB-5083 treatment and a trend of reduced levels of creatinine kinase (CK), a muscle damage marker, was also observed in mice treated with CB-5083 (Fig. 2D).

To assess the effect of CB-5083 on myofiber morphology in VCP^R155H/R155H mice, we examined the gross structures of myofibers from mice quadriceps with H&E staining. In the WT mice, myofibers have a homogenous size, and the nuclei are mostly located in the periphery. However, in the VCP^R155H/R155H mice, we observed infiltrations of cells into the interstitium of the myofibers (Fig. 3A), and a significant increase in the number of centralized nuclei (Fig. 3D), representing newly regenerated myofibers upon damage. With CB-5083 treatment, the number of centralized nuclei in VCP^R155H/R155H mice was significantly reduced compared to vehicle-treated mice (centralized nuclei, WT: 3.9 ± 0.71%, VCP^R155H/R155H vehicle: 7.5 ± 1.47%, VCP^R155H/R155H CB-5083: 3.2 ± 0.50%, over 300 myofibers from 3 mice per group. ANOVA P = 0.01) (Fig. 3A, D).

Since elevated levels of TDP-43, and its translocation from the nucleus to the cytoplasm, have been observed in muscles of the patients and the knock-in VCP mice [32‐34], we next analyzed the localization of TDP-43 in the myofibers. We observed cytoplasmic expression of TDP-43 in VCP^R155H/R155H mice (Fig. 3B, C). The percentage of myofibers with TDP-43 cytoplasmic signals was significantly reduced with CB-5083 treatment (WT (n = 4): 9.03 ± 3.0%, VCP^R155H/R155H vehicle (n = 3): 30.2 ± 5%, VCP^R155H/R155H CB-5083 (n = 4): 13.4 ± 5%, Anova P = 0.02) (Fig. 3B, E). These data, therefore, suggest that the prolonged 5-month-treatment with CB-5083 can mitigate myofiber pathology and intracellular TDP-43 mislocalization in the VCP^R155H/R155H mice.

Previous studies have revealed several pathological biomarkers that are the hallmark of VCP disease: (1) Elevated TDP-43 levels and its translocation from the nucleus to the cytoplasm [32‐36], and elevation of phosphorylated TDP-43 level, (2) Components of autophagy pathways including p62 which are elevated, suggesting an induced autophagic pathway in the disease condition, (3) Elevation of transcription factor EB (TFEB) involved in lysosomal damage response pathways in the VCP^R155H/+ and VCP knockout mice [37], indicating that lysosome homeostasis is disrupted in the conditions of both VCP deficiency and hyperactivity. Analysis of the drosophila model harboring VCP mutations revealed that VCP is necessary for the degradation of mitofusin proteins. Treating VCP mutant flies with VCP inhibitors, NMS-873 and ML240 resulted in an improvement of mitochondrial pathology and an elevation in levels of mitofusin proteins [16, 35]. To evaluate the effect of CB-5083 on the expression levels of the above-mentioned biomarkers, we compared the protein expression levels in WT, vehicle-treated and CB-5083-treated VCP^R155H/R155H mice. We found that TDP-43 levels were significantly increased in the VCP^R155H/R155H mouse quadriceps muscles compared to WT littermate controls, and this increase was mitigated by the 5-month treatment with CB-5083 (Fig. 4A, B). Elevation of p62 and TFEB in VCP^R155H/R155H muscles were normalized to WT-equivalent levels upon CB-5083 treatment (Fig. 4A, B, D). In contrast to the findings from previous drosophila studies [16, 35], we did not detect significant differences in MFN2 levels in the VCP^R155H/R155H mice compared to WT mice, and CB-5083 did not modulate MFN2 levels (Fig. 4A). Importantly, the elevated TDP-43 phosphorylation in VCP^R155H/R155H mice was also significantly reduced with CB-5083 treatment (Fig. 4B, D). Altogether, our results suggest that CB-5083 treatment alleviates the major disease biomarkers involved in multiple cellular pathways in the VCP^R155H/R155H mice and may have translational potential.

The chronic CB-5083 treatment with the dose of 15 mg/kg for 5 months did not appear to have any adverse effect on deteriorating motor function (Fig. 4C). We did not observe significant functional changes in Rotarod behavior in CB-5083-treated VCP^R155H/R155H mice (n = 8) compared to vehicle treatment (n = 7) (Fig. 4C).

Patients with VCP disease also present with CNS pathology [24, 31, 38]. The major pathological signature includes neuron degeneration, and ubiquitin- and TDP-43-positive cytoplasmic aggregates in dystrophic neurites [38, 39]. In rodent models of VCP disease, cytoplasmic accumulation of TDP-43 is observed widely across brain regions [24, 30, 34, 38]. Even though CB-5083 bioavailability in the brains is one-third of the levels in the circulating blood [40], we wanted to assess if CB-5083 treatment for 5 months could modulate these important disease phenotypes in VCP^R155H/R155H mice. TDP-43 expression in the vehicle-treated VCP^R155H/R155H mice at 7 months was not significantly altered in the brain and the spinal cord compared to the wildtype controls (Fig. 5A–C). These results are consistent with previous findings showing that TDP-43 pathology in the brain appears later and is milder compared to the pathological onset in muscles [24, 30, 34, 38]. Additionally only 30% of patients develop frontotemporal dementia and approximately 10% develop amyotropic lateral sclerosis. We found that TDP-43 expression was reduced in the brain but not in the spinal cord after 5 months of CB-5083 treatment, however this difference was not statistically significant (Fig. 5A–C).

Upon characterization of the spinal cord pathology in the VCP^R155H/R155H mice by Nissl staining, we identified lesions in the mouse spinal cords. In both vehicle and CB-5083-treated spinal cords, atrophy, swelling, and various degrees of neuronal cell injury were observed (Fig. 5D), reminiscent of previous pathological findings in VCP^R155H/R155H mice [24, 38].

Additionally, we tested whether chronic CB-5083 treatment has an effect in aged VCP^R155H/+ mice. We treated 12-month-old VCP^R155H/+ mice with 15 mg/kg CB-5083 for 6 months. Despite the variation of biomarker expression with CB-5083 treatment, we found a slight trend towards reduced p62, LC3I/II, and TFEB levels (Fig. 6). These findings were similar to what was observed with younger CB-5083-treated VCP^R155H/R155H mice (Fig. 4), with the exception that we did not observe a reduction in TDP-43 levels (Fig. 6).

During the drug development pipeline, a battery of tests was performed to assess CB-5083’s potential off-target effects. In a panel of 229 ATPases, CB-5083 was found to have no activity of concern for clinical development in oncology. However, visual disturbances during the Phase 1 trials in oncology were reported. Therefore, further characterization of CB-5083 was conducted and an inhibition constant of 33 nM was identified for phosphodiesterase-6 (PDE6). PDE6 is an essential enzyme for photoreceptor function, converting the photons’ energy from visible light into a neural signal; and PDE6 is a known off-target liability for certain PDE5 inhibitors used clinically to treat erectile dysfunction [18, 41, 42]. A previous phase I clinical trial conducted by Cleave Therapeutics evaluated the safety of CB-5083 in patients with advanced solid tumors or relapsed refractory multiple myeloma. In this trial, patients experienced adverse visual events including photophobia, photopsia, and dyschromatopsia, contributing to the cessation of the Phase I trial during the dose-escalation phase. To evaluate the potential for adverse visual effects in the context of VCP disease, we performed electroretinographic (ERG) analysis in VCP^R155H/R155H mice after a 5-month treatment with CB-5083 to evaluate if the drug has permanent deleterious effects on retinal function. To exclude the effects of acute PDE6 suppression on the ERG recording, we allowed a 24-h washout after the last CB-5083 administration. We found no drug effects on photoresponse kinetics or amplitude (Fig. 7A–D), indicating that CB-5083 is well tolerated and the suppressive effect on PDE6 and retinal function is reversible. Our earlier investigation in WT and VCP^R155H/+ mice led to the same conclusion [40].

All animal experiments were approved by the Institutional Animal Care and Use Committees (IACUC) at the University of California, Irvine. Mice were maintained under regular housing conditions with ad libitum access to food and drink in a pathogen-free facility. The immunohistochemistry, Western blot, and retinal electrophysiology procedures were carried out using 4-month-old to 12-month-old mice of both sexes. Genotypes were determined using PCR from tail or ear punches (Transnetyx, Inc., Cordova, TN). The VCP R155H mice were generated at InGenious Targeting Laboratory, Inc. (Ronkonkoma, NY), and have been backcrossed to C57BL/6J for at least 10 generations [23, 26]. VCP R155H mice are also available through the Jackson Laboratory (Bar Harbor, ME) (Stock #021968).

Mutant cells with heterozygous p.R155H and p.R93C mutations were obtained from the EuroBioBank (Munich, Germany). These mutant cells were generated from the muscle biopsies of patients showing typical clinical phenotype and histological findings of VCP disease. Control myoblasts were obtained from EuroBioBank and were generated from age-matched control subjects without any pathological findings. Cells were grown on plates coated with Gelatin (Stemcell #07903) in Skeletal Growth Medium (Promo Cell C23060) at 37 °C and 5% CO₂ [44]. The identity and purity of the cultures were confirmed by morphological analyses and immunocytochemical stainings.

CB-5083 was reconstituted in DMSO (MP Biomedical #196055) at the concentration of 5 mg/ml and stored at − 20 °C as stock. During cell treatment, 5 mg/ml CB-5083 was serially diluted in Skeletal Growth Medium (Promo Cell C23060) to 50–300 nM concentrations and added to myoblasts (at ~ 70% confluency). Treated myoblasts were incubated for 4–5 days, followed by whole-cell lysis.

Preparation of protein lysates and Western blot analyses were performed as previously described [45]. Primary cells were washed with phosphate buffered saline (PBS) and harvested in RIPA buffer (ThermoFisher) with protease inhibitor cocktail, incubated on ice for at least 10 min, and centrifuged at > 20,000g for 20 min at 4 °C. The supernatant was collected as the total protein lysate. Approximately 30 mg of frozen muscle was homogenized in either RIPA or lysis buffer (50 mM Tris-HCl, 150 mM NaCl, 1% Triton-X) using a Dounce homogenizer (Wheaton Dounce Tissue Grinder, Catalog #357538) with 30–40 strokes. The homogenate was then passed through a 25-gauge syringe 15 times to shear tissue trunks, rotated at 4 °C for ~ 2 h, and centrifuged at > 20,000g at 4 °C for 30 min. The supernatant was collected as total muscle lysate. Nuclear/cytoplasmic fractionation was conducted based on the manufacturer’s protocol (ThermoFisher 78833). Protein lysates were subjected to Western blot and immunoblotted with primary antibodies against GAPDH (1:10,000, Abcam#181602), TDP-43 (1:3000, Abcam#190963), LC3I/II (1:1500, Abcam#192890), p62 (1/5000 Abcam#56416), TFEB (1:3000, Bethyl Laboratory303-673A), MFN2 (1:2000, Abcam#56889), S409/410 p-TDP-43 (1:2500, Cosmo Bio USA: CAC-TIP-PTD-M01). Goat anti-mouse horseradish peroxidase (HRP) or goat anti-rabbit HRP (1:5000) were used as secondary antibodies. For the experiments conducted with VCP^R155H/R155H mice, 3 mice per group were analyzed to assess biomarker expression. For the experiments conducted with VCP^R155H/+ mice, five pairs of mice were analyzed to assess biomarker expression. Western blot was repeated at least twice.

The 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) assay (SigmaM 5655) was used to assess the cell survival rate upon CB-5083 treatment. Myoblasts were plated at the density of 1 × 10⁴ cells per well in the 96-well plate, and treated with dimethylsulfoxide (DMSO) vehicle control; or 50 nM, 75 nM, 100 nM, 150 nM, 200 nM or 300 nM of CB-5083 through serial dilution. Cells were treated for 5 days. When ready, 10 µl of MTT solution was added to 100 µl of cell medium in each well. Cells were incubated at 37 °C for 3 h, followed by the addition of 100 µl MTT solubilization solution in each well. Absorbances were measured at 570 nm for signals, and 690 nm for background.

Immunohistochemical analyses were performed as described [45]. Primary myoblasts were cultured in 8-well chamber slides coated with gelatin. Immunohistochemistry was conducted for myoblasts and muscle sections. Muscles from mice were harvested freshly frozen and subjected to cryosectioning, followed by either immunofluorescence staining or H&E staining. Spinal cords from mice were fixed with 4% paraformaldehyde (PFA) and 30% sucrose and subjected to cryosectioning and Nissl staining. Muscle sections or myoblasts were fixed with 4% PFA for 10 min, 0.2% Triton-X permeabilization for 10 min, 10% donkey serum in tris-buffered saline with 0.1% Triton-X (TBST) blocking for 1 h, anti-TDP-43 rabbit polyclonal antibody (1:200), anti-Desmin rabbit antibody (1:200, Abcam#15200) at 4 °C overnight and followed by goat anti-rabbit Alexa Fluor-488 secondary antibodies (1:500) at room temperature for 1 h. All images were acquired with Keyence with identical configurations for all samples in the same experiment.

Blood samples were collected from mice treated with CB-5083 or vehicle for 5 months. Blood samples were collected under anesthesia using isoflurane. Blood samples were drawn from the heart and transferred into serum tubes (Minicollect ref 450472). Clinical biochemistry testing was obtained from IDEXX Laboratories. Parameters evaluated included contents of alanine aminotransferase, aspartate aminotransferase, alkaline phosphatase, gamma-glutamyl transferase, blood urea nitrogen, creatine kinase, creatinine, total protein, albumin, and total bilirubin.

For in vitro treatment with CB-5083, solid CB-5083 was solubilized in DMSO at the concentration of 5 mg/ml. Variable dosages of CB-5083 were used for cell treatments with DMSO as vehicle control. For in vivo treatment with CB-5083, solid CB-5083 was solubilized in methylcellulose at the concentration of 3 mg/ml. Methylcellulose solution was used as vehicle control for in vivo treatment. Mice were treated with daily oral gavage. For maximum tolerated dosage analysis, 12-month-old VCP^R155H/+ were treated daily with CB-5083 at doses of 15 mg/kg or 25 mg/kg for 2 weeks. Body weights were monitored weekly. For chronic treatment with CB-5083 to assess safety and efficacy, VCP^R155H/R155H mice were treated daily for 5 months starting from 2 months of age, and the VCP^R155H/+ mice were treated from 12 months of age for 6 months.

Mice were anesthetized by an intraperitoneal injection of ketamine (100 mg/kg, KetaVed, Bioniche Teoranta, Inverin Co, Galway, Ireland) and xylazine (10 mg/kg, Rompun, Bayer, Shawnee Mission, KS), and their pupils were dilated with 1% tropicamide (Tropicamide Ophthalmic Solution, Akorn, Lake Forest, IL). Thereafter, the corneas were moistened using 0.3% hypromellose gel (GenTeal, Alcon, Fort Worth, TX) which also secured electrical conductivity during electroretinography (ERG) recording. The ERG was performed as previously described [46] using a Diagnosys Celeris rodent ERG device (Diagnosys LLC, Lowell, MA). Briefly, mice were dark-adapted overnight, and all handling before ERG was done under dim red light (> 600 nm). After electrodes were attached, three more minutes were allowed to fully dark-adapt the animal before stimulation. Stimulation was performed using a green LED (peak emission at ∼ 544 nm, bandwidth ∼ 160 nm) and an ascending 1-log step light intensity series between 0.0005–50 cd s/m².

Fiji Image J was used to quantify the percentage of myofibers with TDP-43 cytoplasmic signal. We first counted how many total myofibers were in one image, then we counted how many myofibers had TDP-43 positive signals in the cytoplasms of the myofibers. Percentage of the myofibers with TDP-43 cytoplasmic signal was calculated and compared across WT, Vehicle, and CB-5083-treated VCP^R155H/R155H mice (n = 4 for CB-5083 treatment, n = 3 for vehicle treatment, and n = 4 for WT). To quantify the number of the centralized nuclei from the H&E staining, at least 300 myofibers were manually counted for each mouse, and the numbers of the centralized nuclei were recorded (n = 3 mice for each group). We identified muscle sections from similar regions of the quadriceps muscles from different mice by (1) selecting muscle sections with similar cross-sectional area, and (2) counting the number of sections from the beginning. The data were presented as the percentage of the centralized nuclei.