Skip to main content
Erschienen in: Archives of Virology 2/2022

25.01.2022 | Annotated Sequence Record

Characterization and genome analysis of two new Aeromonas hydrophila phages, PZL-Ah1and PZL-Ah8

verfasst von: Huabo Yu, Chao Feng, Sayed Haidar Abbas Raza, Liang Zhang, Teng Chi, Yanling Qi, Kaixiang Jia, Yang Zhang, Junfeng Wei, Aidong Qian, Wuwen Sun, Xiaofeng Shan, Lei Zhang

Erschienen in: Archives of Virology | Ausgabe 2/2022

Einloggen, um Zugang zu erhalten

Abstract

Aeromonas hydrophila (A. hydrophila) is an opportunistic pathogen of fish, humans, and livestock, and has a severe negative impact on aquaculture development. Phage therapy is considered an alternative strategy for controlling bacterial infections and contamination. In this study, we isolated and characterized the genomes of two A. hydrophila-specific phages, PZL-Ah1 and PZL-Ah8, which, based on transmission electron microscopy, were identified as members of the family Podoviridae. Both of these phages had a relatively narrow host range, with lytic activity against Aeromonas spp. strains. Whole-genome sequence analysis revealed that PZL-Ah1 and PZL-Ah8 have a double-stranded DNA genome of 38,641 bp and 40,855 bp in length, with a GC content of 53.68% and 51.89%, respectively. Forty-four open reading frames (ORFs) were predicted in PZL-Ah1, and 52 were predicted in PZL-Ah8. Twenty-eight (63.6%) ORFs in PZL-Ah1 and 29 (55.8%) ORFs in PZL-Ah8 were predicted to encode functional proteins with homologs in the NCBI database, while the remaining ORFs were classified as encoding hypothetical proteins with unknown functions. A comparison with known phage genes suggested that ORF 02, ORF 29, and ORF 04 of PZL-Ah1 and ORF 2 and ORF 4 of PZL-Ah8 are involved in host cell lysis. This study expands the phage genome database and provides good candidates for phage typing applications.
Anhänge
Nur mit Berechtigung zugänglich
Literatur
1.
Zurück zum Zitat Ghenghesh KS, Ahmed SF, El-Khalek RA, Al-Gendy A, Klena JJTJoIiDC (2008) Aeromonas-associated infections in developing countries. J Infect Dev Ctries 2:81–98CrossRef Ghenghesh KS, Ahmed SF, El-Khalek RA, Al-Gendy A, Klena JJTJoIiDC (2008) Aeromonas-associated infections in developing countries. J Infect Dev Ctries 2:81–98CrossRef
2.
Zurück zum Zitat Harikrishnan R, Balasundaram C, Moon YG, Kim MC, Kim JS, Dharaneedharan S, Heo MSJAVH (2010) Phytotherapy of ulcerative dermatitis induced by Aeromonas hydrophila infection in goldfish (Carassius auratus). Acta Vet Hung 58:29CrossRef Harikrishnan R, Balasundaram C, Moon YG, Kim MC, Kim JS, Dharaneedharan S, Heo MSJAVH (2010) Phytotherapy of ulcerative dermatitis induced by Aeromonas hydrophila infection in goldfish (Carassius auratus). Acta Vet Hung 58:29CrossRef
3.
Zurück zum Zitat Ponnusamy D, Kozlova EV, Sha J, Erova TE, Chopra AK (2016) Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis. Proc Natl Acad Sci USA 113:722CrossRef Ponnusamy D, Kozlova EV, Sha J, Erova TE, Chopra AK (2016) Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis. Proc Natl Acad Sci USA 113:722CrossRef
4.
Zurück zum Zitat Rasmussen-Ivey CR, Figueras MJ, Donald MG, Liles MRJFiM, (2016) virulence factors of Aeromonas hydrophila: In the wake of reclassification. Front Microbiol 7:1337PubMedPubMedCentral Rasmussen-Ivey CR, Figueras MJ, Donald MG, Liles MRJFiM, (2016) virulence factors of Aeromonas hydrophila: In the wake of reclassification. Front Microbiol 7:1337PubMedPubMedCentral
5.
Zurück zum Zitat Tsujimoto Y, Kanzawa Y, Seto H, Nakajima T, Kinami SJ (2019) Necrotizing fasciitis and sepsis caused by Aeromonas hydrophila. Le infezioni in medicina: rivista periodica di eziologia, epidemiologia, diagnostica, clinica e terapia delle patologie infettive 27:21–22 Tsujimoto Y, Kanzawa Y, Seto H, Nakajima T, Kinami SJ (2019) Necrotizing fasciitis and sepsis caused by Aeromonas hydrophila. Le infezioni in medicina: rivista periodica di eziologia, epidemiologia, diagnostica, clinica e terapia delle patologie infettive 27:21–22
6.
Zurück zum Zitat Smith HW, Huggins MBJJoGM (1983) Effectiveness of phages in treating experimental Escherichia coli diarrhoea in calves, piglets and lambs. J Gen Microbiol 129:2659–2675PubMed Smith HW, Huggins MBJJoGM (1983) Effectiveness of phages in treating experimental Escherichia coli diarrhoea in calves, piglets and lambs. J Gen Microbiol 129:2659–2675PubMed
7.
Zurück zum Zitat Anand T, Vaid RK, Bera BC, Singh J, Tripathi BNJJoBM (2016) Isolation of a lytic bacteriophage against virulent Aeromonas hydrophila from an organized equine farm. J Basic Microbiol 56:432–437CrossRef Anand T, Vaid RK, Bera BC, Singh J, Tripathi BNJJoBM (2016) Isolation of a lytic bacteriophage against virulent Aeromonas hydrophila from an organized equine farm. J Basic Microbiol 56:432–437CrossRef
8.
Zurück zum Zitat Rana MA, Rahimi A, Hafeez-ur-Rehman M, Hussain A, Choi T-J (2020) Isolation, characterization, and application of a bacteriophage infecting the fish pathogen Aeromonas hydrophila. Pathogens 9:215CrossRef Rana MA, Rahimi A, Hafeez-ur-Rehman M, Hussain A, Choi T-J (2020) Isolation, characterization, and application of a bacteriophage infecting the fish pathogen Aeromonas hydrophila. Pathogens 9:215CrossRef
9.
Zurück zum Zitat Richards GPJB (2014) Bacteriophage remediation of bacterial pathogens in aquaculture: a review of the technology. Bacteriophage 4:e975540CrossRef Richards GPJB (2014) Bacteriophage remediation of bacterial pathogens in aquaculture: a review of the technology. Bacteriophage 4:e975540CrossRef
10.
Zurück zum Zitat Fenton M, Ross P, Mcauliffe O, O’Mahony J, Coffey AJBB (2010) Recombinant bacteriophage lysins as antibacterials. Bioengineered Bugs 1:9–16CrossRef Fenton M, Ross P, Mcauliffe O, O’Mahony J, Coffey AJBB (2010) Recombinant bacteriophage lysins as antibacterials. Bioengineered Bugs 1:9–16CrossRef
11.
Zurück zum Zitat Guo Z, Huang J, Yan G, Lei L, Wang S, Yu L, Zhou L, Gao A, Xin F, Han WJFiM (2017) Identification and characterization of Dpo42, a novel depolymerase derived from the Escherichia coli phage vB_EcoM_ECOO78. Front Microbiol 8:1460CrossRef Guo Z, Huang J, Yan G, Lei L, Wang S, Yu L, Zhou L, Gao A, Xin F, Han WJFiM (2017) Identification and characterization of Dpo42, a novel depolymerase derived from the Escherichia coli phage vB_EcoM_ECOO78. Front Microbiol 8:1460CrossRef
12.
Zurück zum Zitat Serwer P, Hayes SJ, Thomas JA, Hardies SCJVJ (2007) Propagating the missing bacteriophages: a large bacteriophage in a new class. Virol J 4:1–5CrossRef Serwer P, Hayes SJ, Thomas JA, Hardies SCJVJ (2007) Propagating the missing bacteriophages: a large bacteriophage in a new class. Virol J 4:1–5CrossRef
13.
Zurück zum Zitat Lv M, Wang S, Yan G, Sun C, Feng X, Jingmin Gu, Han W, Lei L (2015) Genome sequencing and analysis of an Escherichia coli phage vB_EcoM-ep3 with a novel lysin, Lysep3. Virus Genes 50:487–497CrossRef Lv M, Wang S, Yan G, Sun C, Feng X, Jingmin Gu, Han W, Lei L (2015) Genome sequencing and analysis of an Escherichia coli phage vB_EcoM-ep3 with a novel lysin, Lysep3. Virus Genes 50:487–497CrossRef
14.
Zurück zum Zitat Krom RJ, Bhargava P, Lobritz MA, Collins JJNL (2015) Engineered phagemids for nonlytic, targeted antibacterial therapies. Nano Lett 15:4808CrossRef Krom RJ, Bhargava P, Lobritz MA, Collins JJNL (2015) Engineered phagemids for nonlytic, targeted antibacterial therapies. Nano Lett 15:4808CrossRef
16.
Zurück zum Zitat Yoichi M, Abe M, Miyanaga K, Unno H, Tanji YJJoB (2005) Alteration of tail fiber protein gp38 enables T2 phage to infect Escherichia coli O157:H7. J Biotechnol 115:101–107CrossRef Yoichi M, Abe M, Miyanaga K, Unno H, Tanji YJJoB (2005) Alteration of tail fiber protein gp38 enables T2 phage to infect Escherichia coli O157:H7. J Biotechnol 115:101–107CrossRef
17.
Zurück zum Zitat Kilcher S, Loessner MJJTiM, (2018) Engineering Bacteriophages as Versatile Biologics. Trends Microbiol 27(4):355–367CrossRef Kilcher S, Loessner MJJTiM, (2018) Engineering Bacteriophages as Versatile Biologics. Trends Microbiol 27(4):355–367CrossRef
Metadaten
Titel
Characterization and genome analysis of two new Aeromonas hydrophila phages, PZL-Ah1and PZL-Ah8
verfasst von
Huabo Yu
Chao Feng
Sayed Haidar Abbas Raza
Liang Zhang
Teng Chi
Yanling Qi
Kaixiang Jia
Yang Zhang
Junfeng Wei
Aidong Qian
Wuwen Sun
Xiaofeng Shan
Lei Zhang
Publikationsdatum
25.01.2022
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 2/2022
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-021-05345-y

Weitere Artikel der Ausgabe 2/2022

Archives of Virology 2/2022 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Mehr Lebenszeit mit Abemaciclib bei fortgeschrittenem Brustkrebs?

24.05.2024 Mammakarzinom Nachrichten

In der MONARCHE-3-Studie lebten Frauen mit fortgeschrittenem Hormonrezeptor-positivem, HER2-negativem Brustkrebs länger, wenn sie zusätzlich zu einem nicht steroidalen Aromatasehemmer mit Abemaciclib behandelt wurden; allerdings verfehlte der numerische Zugewinn die statistische Signifikanz.

ADT zur Radiatio nach Prostatektomie: Wenn, dann wohl länger

24.05.2024 Prostatakarzinom Nachrichten

Welchen Nutzen es trägt, wenn die Strahlentherapie nach radikaler Prostatektomie um eine Androgendeprivation ergänzt wird, hat die RADICALS-HD-Studie untersucht. Nun liegen die Ergebnisse vor. Sie sprechen für länger dauernden Hormonentzug.

„Überwältigende“ Evidenz für Tripeltherapie beim metastasierten Prostata-Ca.

22.05.2024 Prostatakarzinom Nachrichten

Patienten mit metastasiertem hormonsensitivem Prostatakarzinom sollten nicht mehr mit einer alleinigen Androgendeprivationstherapie (ADT) behandelt werden, mahnt ein US-Team nach Sichtung der aktuellen Datenlage. Mit einer Tripeltherapie haben die Betroffenen offenbar die besten Überlebenschancen.

So sicher sind Tattoos: Neue Daten zur Risikobewertung

22.05.2024 Melanom Nachrichten

Das größte medizinische Problem bei Tattoos bleiben allergische Reaktionen. Melanome werden dadurch offensichtlich nicht gefördert, die Farbpigmente könnten aber andere Tumoren begünstigen.

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.