Introduction
Materials and methods
Study design and participants
Data collection
Statistical analysis
Results
Epidemiology and demographic characteristics of HPMV infections
All patients (No. = 96) | Mild pneumonia (No. = 71) | Severe pneumonia (No. = 25) | P value | |
---|---|---|---|---|
Demographics | -- | -- | -- | -- |
Age, median (IQR), months | 33.5 (12.0, 48.0) | 36 (12.0, 53.0) | 12 (7.5, 36.0) | 0.005 |
Male sex, No. (%) | 58 (60.4) | 42 (59.2) | 16 (64.0) | 0.670 |
Urban, No. (%) | 67 (69.8) | 55 (77.5) | 12 (48.0) | 0.06 |
Symptoms on presentation | -- | -- | -- | -- |
Fever, No. (%) | 78 (81.3) | 60 (84.5) | 18 (72.0) | 0.168 |
Cough, No. (%) | 89 (92.7) | 66 (93.0) | 23 (92.0) | 0.874 |
Wheezing, No. (%) | 29 (30.2) | 15 (21.1) | 14 (56.0) | 0.001 |
Fever, cough, wheezing, No. (%) | 17 (17.7) | 9 (12.7) | 8 (32.0) | 0.063 |
Fever, cough, No. (%) | 55 (57.3) | 47 (66.2) | 8 (32.0) | 0.003 |
Fever, wheezing, No. (%) | 2 (2.1) | 2 (2.8) | 0 (0.0) | 1.000 |
Cough, wheezing No. (%) | 10 (10.4) | 4 (5.6) | 6 (24.0) | 0.018 |
Fever alone, No. (%) | 4 (4.2) | 2 (2.8) | 2 (8.0) | 0.277 |
Cough alone, No. (%) | 7 (7.3) | 6 (8.5) | 1 (4.0) | 0.672 |
Vital signs at presentation | -- | -- | -- | -- |
Temperature, median (IQR), No., °C | 36.8 (36.5, 37.2), 96 | 36.8 (36.5, 37.1), 71 | 37.0 (36.7, 37.8), 25 | 0.133 |
Temperature max, median (IQR), No., °C | 39.0 (38.5, 39.5), 86 | 39.0 (38.5, 39.6), 65 | 38.8 (38.4, 39.5), 21 | 0.636 |
Respiratory rate, median (IQR), No., breaths/min | 28.0 (25.0, 32.0), 96 | 26.0 (25.0, 30.0), 71 | 35.0 (28.0, 44.5), 25 | 0.000003 |
Heart rate, median (IQR), No., /min | 117.0 (106.5, 130.0), 96 | 112.0 (105.0, 124.0), 71 | 130.0 (114.0, 163.5), 25 | 0.000191 |
Weight, median (IQR), No., Kg | 13.1 (10.4, 18.0), 94 | 14.0 (11.7, 18.0), 69 | 11.0 (8.8, 14.6), 25 | 0.002 |
Birth weight, median (IQR), No., Kg | 3.3 (3.0, 3.5) 93 | 3.3 (3.1, 3.4), 69 | 3.3 (3.0, 3.5), 24 | 0.975 |
Duration from illness onset to hospitalization, median (IQR), days | 5.0 (4.0, 9.0) | 5.0 (4.0, 11.0) | 4.0 (3.0, 7.5) | 0.112 |
Duration from hospitalization to diagnosis, median (IQR), days | 2 (1.0, 2.0) | 2 (1.0, 2.0) | 2 (1.0, 2.0) | 0.346 |
Duration from diagnosis to hospital discharge, median (IQR), days | 4 (2.0, 9.0) | 4 (3.0, 5.0) | 6 (4.5, 9.5) | 0.000027 |
Duration of hospitalization, median (IQR), days | 6.0 (5.0, 8.0) | 6.0 (5.0, 7.0) | 8.0 (6.0, 13.5) | 0.000321 |
Coinfections with other causative agents based on tNGS
All patients (No. = 96) | Mild pneumonia (No. = 71) | Severe pneumonia (No. = 25) | P value | |
---|---|---|---|---|
With mixed infection, No., (%) | 91 (94.8) | 66 (93) | 25 (100.0) | 0.173 |
With mixed virus infection, No., (%) | 43 (44.8) | 25 (35.2) | 18 (72) | 0.001 |
EBV, No., (%) | 15 (15.6) | 12 (16.9) | 3 (12) | 0.752 |
HRV-A, No., (%) | 12 (12.5) | 7 (9.9) | 5 (20) | 0.168 |
CMV, No., (%) | 8 (8.3) | 5 (7.0) | 3 (12) | 0.425 |
HRSV, No., (%) | 6 (6.3) | 1 (1.4) | 5 (20) | 0.004 |
HPIV type3, No., (%) | 6 (6.3) | 4 (5.6) | 2 (8) | 0.649 |
HCoV, No., (%) | 6 (6.3) | 5 (7.0) | 1 (4) | 1.000 |
Other viruses, No., (%) | 12 (12.5) | 7 (9.9) | 5 (20) | 0.289 |
With mixed bacterium infection, No., (%) | 74 (77.1) | 55 (77.5) | 19 (76) | 0.881 |
SPN, No., (%) | 40 (41.7) | 32 (45.1) | 8 (32) | 0.346 |
Hin, No., (%) | 50 (52.1) | 36 (50.7) | 14 (56) | 0.816 |
KP, No., (%) | 8 (8.3) | 6 (8.5) | 2 (8) | 1.000 |
MC, No., (%) | 9 (9.4) | 7 (9.9) | 2 (8) | 1.000 |
SA, No., (%) | 7 (7.3)a | 4 (5.6) | 3 (12) | 0.372 |
Other bacteria, No., (%) | 8 (8.3) | 8 (11.3) | 0 (0.0) | 0.107 |
With mixed fungus infection, No., (%) | 16 (16.7) | 10 (14.1) | 6 (24) | 0.348 |
C. albicans, No., (%) | 12 (12.5) | 8 (11.3) | 4 (16) | 0.504 |
Other fungus, No., (%) | 4 (4.2) | 3 (4.2) | 1 (4) | 1.000 |
Laboratory test findings
All patients (No. = 96) | Mild pneumonia (No. = 71) | Severe pneumonia (No. = 25) | P value | |
---|---|---|---|---|
Blood routine examination | -- | -- | -- | -- |
WBC count, median (IQR), No., 10^9/L, | 7.4 (5.2, 9.9), 81 | 7.1 (5.1, 9.5), 61 | 8.8 (5.2, 13.2), 20 | 0.090 |
RBC count, median (IQR), No., 10^12/L | 4.4 (4.2, 4.7), 81 | 4.4 (4.1, 4.7), 61 | 4.4 (4.3 4.5), 20 | 0.607 |
Hemoglobin, median (IQR), No., g/L | 119.0 (113.0, 126.0), 81 | 120.0 (113.0, 126.0), 61 | 118.5 (109.0, 122.8), 20 | 0.261 |
PLT, median (IQR), No., 10^9/L, | 292.0 (233.0, 387.0), 81 | 278.0 (216.0, 361.5), 61 | 327.5 (259.0, 406.5), 20 | 0.087 |
%NEUT, median (IQR), No., % | 42.5 (31.4, 57.2), 81 | 37.0 (29.1, 50.0), 61 | 57.4 (45.6, 73.1), 20 | 0.000022 |
%LYMPH, median (IQR), No., % | 49.8 (36.9, 59.9), 81 | 55.5 (42.9, 61.9), 61 | 36.9 (20.7, 43.9), 20 | 0.000007 |
%MONO, median (IQR), No., % | 6.1 (4.7, 8.4), 81 | 6.0 (4.8, 7.8), 61 | 7.5 (4.2, 9.0), 20 | 0.446 |
%EOS, median (IQR), No., % | 0.6 (0.0, 0.2), 81 | 0.8 (0.1, 1.8), 61 | 0.0 (0.0, 0.3), 20 | 0.000273 |
%BASO, median (IQR), No., % | 0.2 (0.2, 0.4), 81 | 0.3 (0.2, 0.4), 61 | 0.2 (0.0, 0.3), 20 | 0.013 |
NEUT count, median (IQR), No., 10^9/L, | 3.1 (1.6, 4.9), 81 | 2.9 (1.5, 3.8), 61 | 4.7 (3.0, 8.3), 20 | 0.001 |
LYMPH count, median (IQR), No., 10^9/L, | 3.3 (2.2, 5.0), 81 | 3.6 (2.4, 5.1), 61 | 2.5 (1.6, 4.4), 20 | 0.064 |
MONO count, median (IQR), No., 10^9/L, | 0.4 (0.3, 0.7), 81 | 0.4 (0.3, 0.5), 61 | 0.7 (0.4, 1.1), 20 | 0.040 |
EOS count, median (IQR), No., 10^9/L, | 0.04 (0.00, 0.11), 81 | 0.06 (0.10, 0.12), 61 | 0.00 (0.00, 0.03), 20 | 0.001 |
BASO count, median (IQR), No., 10^9/L, | 0.02 (0.01, 0.03), 81 | 0.02 (0.01, 0.03), 61 | 0.02 (0.00, 0.04), 20 | 0.409 |
CRP, median (IQR), No., mg/L | 3.2 (0.5, 10.6), 81 | 3.4 (0.5, 10.4), 61 | 3.0 (0.5, 11.0), 20 | 0.894 |
ESR, median (IQR), No., mm/h | 21.0 (9.0, 28.0), 72 | 22.0 (13.3, 30.0), 52 | 14.5 (3.0, 21.0), 20 | 0.013 |
Coagulation profile | -- | -- | -- | -- |
Prothrombin time, median (IQR), No., S | 11.5 (10.6, 12.0),43 | 11.7 (11.4, 12.3), 25 | 10.7 (10.4, 11.7), 18 | 0.013 |
Prothrombin activity, median (IQR), No., % | 101.4 (96.3, 111.9), 43 | 99.3 (94.0, 103.1), 25 | 110.6 (99.3, 114.8), 18 | 0.013 |
International normalized ratio, median (IQR), No | 1.0 (0.9, 1.0), 43 | 1.0 (1.0, 1.1), 25 | 0.9 (0.9, 1.0), 18 | 0.013 |
Activated partial thromboplastin time, median (IQR), No., S | 31.4 (26.8, 33.9), 42 | 31.4 (29.0, 33.6), 25 | 30.8 (25.1, 34.3), 17 | 0.405 |
Fibrinogen concentration, median (IQR), No., g/L | 3.1 (2.4, 3.7),43 | 3.4 (3.0, 4.0), 25 | 2.4 (1.7, 3.1), 18 | 0.000355 |
Thrombin time, median (IQR), No., S | 15.4 (14.5, 16.2), 43 | 14.9 (14.3, 15.7), 25 | 15.8 (15.2, 17.4), 18 | 0.008 |
Blood biochemical parameters | -- | -- | -- | -- |
Total bilirubin, median (IQR), No., umol | 4.8 (3.6, 6.6), 91 | 4.7 (3.4, 6.2), 67 | 5.1 (4.0, 7.7), 24 | 0.253 |
Conjugated bilirubin, median (IQR), No., umol | 1.7 (1.2, 2.2), 91 | 1.8 (1.3, 2.2), 67 | 1.1 (0.7, 2.2), 24 | 0.032 |
Unconjugated bilirubin, median (IQR), No., umol | 3.3 (2.1, 4.5), 91 | 2.9 (1.9, 4.3), 67 | 4.1 (2.6, 5.0), 24 | 0.038 |
ALT, median (IQR), No., U/L | 17.0 (12.8, 21.0), 91 | 15.6 (12.1, 19.5), 67 | 19.5 (17.0, 27.8), 24 | 0.004 |
AST, median (IQR), No., U/L | 37.0 (30.1, 43.6), 91 | 36.6 (29.5, 42.1), 67 | 42.5 (35.6, 49.6), 24 | 0.014 |
ALP, median (IQR), No., U/L | 169.0 (141.7, 214.6), 91 | 169.4 (142.2, 209.9), 67 | 157.1 (123.0, 233.4), 24 | 0.903 |
GGT, median (IQR), No., U/L | 12.6 (11.0, 14.9), 89 | 12.0 (10.5, 13.2), 65 | 16.7 (13.1, 29.6), 24 | 0.000004 |
LDH, median (IQR), No., U/L | 313.8 (272.8, 393.0), 90 | 297.5 (271.8, 369.8), 66 | 384.0 (313.4, 425.8), 24 | 0.004 |
α-HBBDH, median (IQR), No., U/L | 222.5 (199.3, 253.8), 64 | 222.0 (199.5, 253.5), 53 | 223.0 (198.0, 269.0), 11 | 0.845 |
CK, median (IQR), No., U/L | 83.5 (54.7, 109.3), 90 | 86.5 (56.0, 111.3), 66 | 63.0 (45.8, 102.0), 24 | 0.096 |
CK-MB, median (IQR), No., U/L | 20.0 (16.0, 27.2), 90 | 18.5 (15.3, 25.3), 66 | 25.0 (16.0, 38.3), 24 | 0.035 |
Total protein, median (IQR), No., g/L | 62.2 (60.3, 65.3), 91 | 62.2 (60.3, 65.1), 67 | 62.2 (60.0, 66.3), 24 | 0.787 |
Albumin, median (IQR), No., g/L | 40.5 (38.6, 42.5), 91 | 40.6 (38.5, 42.8), 67 | 40.2 (38.7, 42.1), 24 | 0.627 |
Globulin, median (IQR), No., g/L | 22.6 (19.7, 24.3), 91 | 22.8 (19.5, 24.4), 67 | 22.4 (20.1, 24.2), 24 | 0.900 |
Urea, median (IQR), No., mmol | 2.9 (2.2, 3.6), 90 | 2.9 (2.3, 3.5), 66 | 2.7 (1.8, 4.0), 24 | 0.902 |
Creatinine, median (IQR), No., umol | 22.1 (17.9, 29.4), 90 | 23.2 (19.1, 29.8), 66 | 18.5 (15.1, 25.5), 24 | 0.014 |
Uric acid, median (IQR), No., umol | 218.5 (184.2, 268.0), 90 | 229.0 (194.7, 270.0), 66 | 196.1 (133.3, 245.9), 24 | 0.040 |
Kalium, median (IQR), No., mmol | 4.3 (4.0, 4.7), 76 | 4.3 (4.0, 4.7), 60 | 4.3 (4.1, 4.7), 16 | 0.990 |
Sodium (Na), median (IQR), No., mmol | 139.0 (137.3, 140.0), 76 | 139.2 (137.5, 140.2), 60 | 138.3 (136.5, 139.5), 16 | 0.221 |
Chlorine, median (IQR), No., mmol | 104.8 (102.4, 106.7), 76 | 105.1 (102.5, 107.0), 60 | 104.3 (101.7, 106.1), 16 | 0.238 |
Calcium, median (IQR), No., mmol | 2.4 (2.3, 2.4), 76 | 2.4 (2.3, 2.4), 60 | 2.3 (2.1, 2.5), 16 | 0.707 |
Phosphorus, median (IQR), No., mmol | 1.5 (1.4, 1.7), 40 | 1.5 (1.3, 1.7), 26 | 1.6 (1.4, 1.7), 14 | 0.435 |
Magnesium, median (IQR), No., mmol | 0.9 (0.9, 1.0), 37 | 0.9 (0.9, 1.0), 25 | 1.0 (0.9, 1.0), 12 | 0.884 |
Immunology index | -- | -- | -- | -- |
Ig E, median (IQR), No., ng/ml | 141.6 (48.5, 433.3), 81 | 147.3 (50.5, 562.0), 63 | 125.2 (38.1, 314.0), 18 | 0.450 |
Ig G, median (IQR), No., g/L | 7.5 (5.7, 9.2), 82 | 7.7 (6.3, 9.3), 62 | 5.7 (5.1, 8.6), 20 | 0.021 |
Ig M, median (IQR), No., g/L | 1.0 (0.8, 1.3), 82 | 1.1 (0.8, 1.3), 62 | 1.0 (0.7, 1.3), 20 | 0.646 |
Ig A, median (IQR), No., g/L | 0.6 (0.4, 1.0), 82 | 0.7 (0.5, 1.2), 62 | 0.4 (0.4, 0.6), 20 | 0.007 |
Complement C3, median (IQR), No., g/L | 1.1 (1.0, 1.3), 82 | 1.1 (1.0, 1.3), 62 | 1.1 (0.9, 1.2), 20 | 0.087 |
Complement C4, median (IQR), No., g/L | 0.3 (0.3, 0.4), 82 | 0.3 (0.3, 0.4), 62 | 0.3 (0.2, 0.3), 20 | 0.118 |