CMR of the carotid arteries was performed on a single 1.5-T scanner (GE Healthcare, Milwaukee, WI, USA) with a dedicated bilateral phased-array surface coil (Machnet, Eelde, The Netherlands). The high-resolution images were obtained using a standardized protocol [
14]. First, both carotids were identified by means of two-dimensional (2D) time-of-flight MR angiography. Second, high-resolution CMR sequences were planned to image the carotid bifurcations on both sides. These sequences consisted of four 2D sequences in the axial plane, namely a proton density weighted (PDw)-fast spin echo (FSE)-black blood (BB) sequence (in-plane resolution 130/160 x 130/128 = 0.8 x 1 cm); a PDw-FSE-BB with an increased in-plane resolution (in-plane resolution 130/224 x 130/160 = 0.5 x 0.8 cm); a PDw-echo planar image (EPI) sequence (in-plane resolution 130/160 x 70/160 = 0.8 x 0.4 cm); and a T2w-EPI sequence (in-plane resolution 130/160 x 70/160 = 0.8 x 0.4 cm). Additionally, we performed two 3D sequences, namely a 3D-T1w-gradient echo (GRE) sequence (in-plane resolution 180/192 x 180/180 = 0.9 x 1 cm), and a 3D phased-contrast MR angiography (in-plane resolution 180/256 x 180/128 = 0.7 x 1.4 cm) (Additional file
1: Table S3). The total scanning time was approximately 30 min [
14]. Calcification was evaluated bilaterally within three centimeters proximal and distal of the bifurcation [
12]. All calcification measurements on CMR were performed by one trained physician under the supervision of an experienced neuroradiologist. We performed an intra- and inter-observer reproducibility analysis on a random set of 30 CMR examinations. The intra- and inter-agreement was very good [Cohens’ Kappa : 0.91 (95% CI 0.82–0.99) and 0.94 (95% CI 0.86–0.99)], respectively. We defined calcification as a hypointense region in the plaque on all sequences. We manually annotated and segmented calcification in all plaques using a standardized approach. First, we pre-processed all images using a method that has been described extensively before [
15]. This starts with a bias correction to reduce the intensity inhomogeneity characteristic in CMR [
15]. Subsequently, the carotid artery in all images was rigidly registered to the black-blood image space using the Elastix tool [
15]. For the registration of the sequences, a Region Of Interest (ROI) around the artery in black-blood was used. This ROI was obtained semi-automatically by uniformly growing an extracted carotid artery centerline, which requires three marked seed points at the common, internal and external parts of the artery [
15]. Then calcification was manually delineated in every consecutive slice using an annotation tool developed in Mevislab (MeVisLab, MeVis Medical Solutions AG). Fourth, the total volume of calcification was calculated by counting the number of voxels within the annotated areas and multiplying this by the voxel volume (Fig.
1). This provided volumes of calcification in cubic millimeters.