Skip to main content
Erschienen in: Cancer Chemotherapy and Pharmacology 1/2020

19.11.2019 | Original Article

Discovery of hPRDX5-based peptide inhibitors blocking PD-1/PD-L1 interaction through in silico proteolysis and rational design

verfasst von: Sen Zou, Juanjuan Liu, Zhengyang Sun, Xiao Feng, Zhongbo Wang, Yuanyuan Jin, Zhaoyong Yang

Erschienen in: Cancer Chemotherapy and Pharmacology | Ausgabe 1/2020

Einloggen, um Zugang zu erhalten

Abstract

Purpose

The human peroxiredoxin-5 (hPRDX5) is a member of the family of antioxidant enzymes, which could resist immunosuppression by promoting immune organs development, lymphocyte proliferation and up-regulation of the levels of serum cytokines. However, being a recombinant protein, the hPRDX5 exhibits some problems including the high production cost and bad tissue penetration. Compared to macromolecular therapeutic agents, synthetic peptides have several advantages as drug candidates, such as lower manufacturing costs, reduced immunogenicity, and better organ or tumor penetration. The purpose of this research was to design the novel peptides come from hPRDX5 that can block the interaction of PD-1 and PD-L1.

Methods

Herein in this work, we firstly confirmed the inhibitory activity of hPRDX5 on the binding of PD-L1 to PD-1 based on the previous observation, subsequently, in silico proteolysis and rational design (such as alanine scanning mutagenesis and truncation) were used to automate the design of new peptides derived from hPRDX5 with anti-tumour activity.

Results

We found that the most potent peptide could block the PD-1/PD-L1 interaction effectively with an IC50 of 0.646 μM, and could restore the function of Jurkat T cells which had been suppressed by stimulated HCT116 cells. Moreover, experiments with tumor-bearing mice models showed that the peptide IMB-P6-10 could effectively inhibit tumor growth and showed extraordinary low acute toxicity in vivo.

Conclusions

The peptides described in this paper may provide novel low-molecular-weight drug candidates for cancer immunotherapy.
Literatur
1.
Zurück zum Zitat Parish CR (2003) Cancer immunotherapy: the past, the present and the future. Immunol Cell Biol 81:106–113CrossRef Parish CR (2003) Cancer immunotherapy: the past, the present and the future. Immunol Cell Biol 81:106–113CrossRef
2.
Zurück zum Zitat Waldmann TA (2003) Immunotherapy: past, present and future. Nat Med 9:269–277CrossRef Waldmann TA (2003) Immunotherapy: past, present and future. Nat Med 9:269–277CrossRef
3.
Zurück zum Zitat Sharma P, Allison JP (2015) The future of immune checkpoint therapy. Science 348:56–61CrossRef Sharma P, Allison JP (2015) The future of immune checkpoint therapy. Science 348:56–61CrossRef
4.
Zurück zum Zitat Sharma P, Wagner K, Wolchok JD, Allison JP (2011) Novel cancer immunotherapy agents with survival benefit: recent successes and next steps. Nat Rev Cancer 11:805–812CrossRef Sharma P, Wagner K, Wolchok JD, Allison JP (2011) Novel cancer immunotherapy agents with survival benefit: recent successes and next steps. Nat Rev Cancer 11:805–812CrossRef
5.
Zurück zum Zitat Topalian SL, Drake CG, Pardoll DM (2015) Immune checkpoint blockade: a common denominator approach to cancer therapy. Cancer Cell 27:450–461CrossRef Topalian SL, Drake CG, Pardoll DM (2015) Immune checkpoint blockade: a common denominator approach to cancer therapy. Cancer Cell 27:450–461CrossRef
6.
Zurück zum Zitat Ishida Y, Agata Y, Shibahara K, Honjo T (1992) Induced expression of PD-1, a novel member of the immunoglobulin gene superfamily, upon programmed cell death. EMBO J 11:3887–3895CrossRef Ishida Y, Agata Y, Shibahara K, Honjo T (1992) Induced expression of PD-1, a novel member of the immunoglobulin gene superfamily, upon programmed cell death. EMBO J 11:3887–3895CrossRef
7.
Zurück zum Zitat Freeman GJ, Long AJ, Iwai Y et al (2000) Engagement of the PD-1 immunoinhibitory receptor by a novel B7 family member leads to negative regulation of lymphocyte activation. J Exp Med 192:1027–1034CrossRef Freeman GJ, Long AJ, Iwai Y et al (2000) Engagement of the PD-1 immunoinhibitory receptor by a novel B7 family member leads to negative regulation of lymphocyte activation. J Exp Med 192:1027–1034CrossRef
8.
Zurück zum Zitat Latchman Y, Wood CR, Chernova T et al (2001) PD-L2 is a second ligand for PD-1 and inhibits T cell activation. Nat Immunol 2:261–268CrossRef Latchman Y, Wood CR, Chernova T et al (2001) PD-L2 is a second ligand for PD-1 and inhibits T cell activation. Nat Immunol 2:261–268CrossRef
9.
Zurück zum Zitat Keir ME, Butte MJ, Freeman GJ, Sharpe AH (2008) PD-1 and its ligands in tolerance and immunity. Annu Rev Immunol 26:677–704CrossRef Keir ME, Butte MJ, Freeman GJ, Sharpe AH (2008) PD-1 and its ligands in tolerance and immunity. Annu Rev Immunol 26:677–704CrossRef
10.
Zurück zum Zitat Keir ME, Francisco LM, Sharpe AH (2007) PD-1 and its ligands in T-cell immunity. Curr Opin Immunol 19:309–314CrossRef Keir ME, Francisco LM, Sharpe AH (2007) PD-1 and its ligands in T-cell immunity. Curr Opin Immunol 19:309–314CrossRef
11.
Zurück zum Zitat Zou W, Chen L (2008) Inhibitory B7-family molecules in the tumour microenvironment. Nat Rev Immunol 8:467–477CrossRef Zou W, Chen L (2008) Inhibitory B7-family molecules in the tumour microenvironment. Nat Rev Immunol 8:467–477CrossRef
12.
Zurück zum Zitat Sakuishi K, Apetoh L, Sullivan JM, Blazar BR, Kuchroo VK, Anderson AC (2010) Targeting Tim-3 and PD-1 pathways to reverse T cell exhaustion and restore anti-tumor immunity. J Exp Med 207:2187–2194CrossRef Sakuishi K, Apetoh L, Sullivan JM, Blazar BR, Kuchroo VK, Anderson AC (2010) Targeting Tim-3 and PD-1 pathways to reverse T cell exhaustion and restore anti-tumor immunity. J Exp Med 207:2187–2194CrossRef
13.
Zurück zum Zitat Sui X, Ma J, Han W et al (2015) The anticancer immune response of anti-PD-1/PD-L1 and the genetic determinants of response to anti-PD-1/PD-L1 antibodies in cancer patients. Oncotarget 6:19393–19404PubMedPubMedCentral Sui X, Ma J, Han W et al (2015) The anticancer immune response of anti-PD-1/PD-L1 and the genetic determinants of response to anti-PD-1/PD-L1 antibodies in cancer patients. Oncotarget 6:19393–19404PubMedPubMedCentral
14.
Zurück zum Zitat Luke JJ, Ott PA (2015) PD-1 pathway inhibitors: the next generation of immunotherapy for advanced melanoma. Oncotarget 6:3479–3492CrossRef Luke JJ, Ott PA (2015) PD-1 pathway inhibitors: the next generation of immunotherapy for advanced melanoma. Oncotarget 6:3479–3492CrossRef
15.
Zurück zum Zitat Yamazaki T, Akiba H, Iwai H et al (2002) Expression of programmed death 1 ligands by murine T cells and APC. J Immunol 169:5538–5545CrossRef Yamazaki T, Akiba H, Iwai H et al (2002) Expression of programmed death 1 ligands by murine T cells and APC. J Immunol 169:5538–5545CrossRef
16.
Zurück zum Zitat Harding FA, Stickler MM, Razo J, DuBridge RB (2010) The immunogenicity of humanized and fully human antibodies: residual immunogenicity resides in the CDR regions. MAbs 2:256–265CrossRef Harding FA, Stickler MM, Razo J, DuBridge RB (2010) The immunogenicity of humanized and fully human antibodies: residual immunogenicity resides in the CDR regions. MAbs 2:256–265CrossRef
17.
Zurück zum Zitat Nelson AL, Dhimolea E, Reichert JM (2010) Development trends for human monoclonal antibody therapeutics. Nat Rev Drug Discov 9:767–774CrossRef Nelson AL, Dhimolea E, Reichert JM (2010) Development trends for human monoclonal antibody therapeutics. Nat Rev Drug Discov 9:767–774CrossRef
18.
Zurück zum Zitat Su X, Dong C, Zhang J et al (2014) Combination therapy of anti-cancer bioactive peptide with Cisplatin decreases chemotherapy dosing and toxicity to improve the quality of life in xenograft nude mice bearing human gastric cancer. Cell Biosci 4:7CrossRef Su X, Dong C, Zhang J et al (2014) Combination therapy of anti-cancer bioactive peptide with Cisplatin decreases chemotherapy dosing and toxicity to improve the quality of life in xenograft nude mice bearing human gastric cancer. Cell Biosci 4:7CrossRef
19.
Zurück zum Zitat Su L, Xu G, Shen J et al (2010) Anticancer bioactive peptide suppresses human gastric cancer growth through modulation of apoptosis and the cell cycle. Oncol Rep 23:3–9PubMed Su L, Xu G, Shen J et al (2010) Anticancer bioactive peptide suppresses human gastric cancer growth through modulation of apoptosis and the cell cycle. Oncol Rep 23:3–9PubMed
20.
Zurück zum Zitat Su XL, Ouyang XH, Xu GH, Shen J, Wang ZY (2008) Effect of ACBP-S on cell cycle and apoptosis in human gastric cancer cells. Zhonghua Zhong Liu Za Zhi 30:422–427PubMed Su XL, Ouyang XH, Xu GH, Shen J, Wang ZY (2008) Effect of ACBP-S on cell cycle and apoptosis in human gastric cancer cells. Zhonghua Zhong Liu Za Zhi 30:422–427PubMed
21.
Zurück zum Zitat Zhao YY, Peng SD, Su XL (2006) Effects of anti-cancer bioactive peptide on cell cycle in human nasopharyngeal carcinoma strain CNE. Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi 41:607–611PubMed Zhao YY, Peng SD, Su XL (2006) Effects of anti-cancer bioactive peptide on cell cycle in human nasopharyngeal carcinoma strain CNE. Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi 41:607–611PubMed
22.
Zurück zum Zitat Feng X, Liu J, Fan S et al (2016) The identification of goat peroxiredoxin-5 and the evaluation and enhancement of its stability by nanoparticle formation. Sci Rep 6:24467CrossRef Feng X, Liu J, Fan S et al (2016) The identification of goat peroxiredoxin-5 and the evaluation and enhancement of its stability by nanoparticle formation. Sci Rep 6:24467CrossRef
23.
Zurück zum Zitat Vlieghe P, Lisowski V, Martinez J, Khrestchatisky M (2010) Synthetic therapeutic peptides: science and market. Drug Discov Today 15:40–56CrossRef Vlieghe P, Lisowski V, Martinez J, Khrestchatisky M (2010) Synthetic therapeutic peptides: science and market. Drug Discov Today 15:40–56CrossRef
24.
Zurück zum Zitat Minkiewicz P, Dziuba J, Iwaniak A, Dziuba M, Darewicz M (2008) BIOPEP database and other programs for processing bioactive peptide sequences. J AOAC Int 91:965–980PubMed Minkiewicz P, Dziuba J, Iwaniak A, Dziuba M, Darewicz M (2008) BIOPEP database and other programs for processing bioactive peptide sequences. J AOAC Int 91:965–980PubMed
25.
Zurück zum Zitat Dziuba B, Dziuba M (2014) New milk protein-derived peptides with potential antimicrobial activity: an approach based on bioinformatic studies. Int J Mol Sci 15:14531–14545CrossRef Dziuba B, Dziuba M (2014) New milk protein-derived peptides with potential antimicrobial activity: an approach based on bioinformatic studies. Int J Mol Sci 15:14531–14545CrossRef
26.
Zurück zum Zitat Lafarga T, O’Connor P, Hayes M (2014) Identification of novel dipeptidyl peptidase-IV and angiotensin-I-converting enzyme inhibitory peptides from meat proteins using in silico analysis. Peptides 59:53–62CrossRef Lafarga T, O’Connor P, Hayes M (2014) Identification of novel dipeptidyl peptidase-IV and angiotensin-I-converting enzyme inhibitory peptides from meat proteins using in silico analysis. Peptides 59:53–62CrossRef
27.
Zurück zum Zitat Qiao L, Li B, Chen Y et al (2016) Discovery of anti-hypertensive oligopeptides from adlay based on in silico proteolysis and virtual screening. Int J Mol Sci 17:2099CrossRef Qiao L, Li B, Chen Y et al (2016) Discovery of anti-hypertensive oligopeptides from adlay based on in silico proteolysis and virtual screening. Int J Mol Sci 17:2099CrossRef
28.
Zurück zum Zitat Azzarito V, Long K, Murphy NS, Wilson AJ (2013) Inhibition of alpha-helix-mediated protein-protein interactions using designed molecules. Nat Chem 5:161–173CrossRef Azzarito V, Long K, Murphy NS, Wilson AJ (2013) Inhibition of alpha-helix-mediated protein-protein interactions using designed molecules. Nat Chem 5:161–173CrossRef
29.
Zurück zum Zitat Jin Y, Li L, Yang Z, Liu M, Guo H, Shen W (2017) The discovery of a novel compound with potent antitumor activity: virtual screening, synthesis, biological evaluation and preliminary mechanism study. Oncotarget 8:24635–24643PubMedPubMedCentral Jin Y, Li L, Yang Z, Liu M, Guo H, Shen W (2017) The discovery of a novel compound with potent antitumor activity: virtual screening, synthesis, biological evaluation and preliminary mechanism study. Oncotarget 8:24635–24643PubMedPubMedCentral
30.
Zurück zum Zitat Zak KM, Grudnik P, Guzik K et al (2016) Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Oncotarget 7:30323–30335CrossRef Zak KM, Grudnik P, Guzik K et al (2016) Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Oncotarget 7:30323–30335CrossRef
31.
Zurück zum Zitat Li Q, Quan L, Lyu J et al (2016) Discovery of peptide inhibitors targeting human programmed death 1 (PD-1) receptor. Oncotarget 7:64967–64976PubMedPubMedCentral Li Q, Quan L, Lyu J et al (2016) Discovery of peptide inhibitors targeting human programmed death 1 (PD-1) receptor. Oncotarget 7:64967–64976PubMedPubMedCentral
32.
Zurück zum Zitat Sun Z, Zhang Y, Cao D et al (2018) PD-1/PD-L1 pathway and angiogenesis dual recognizable nanoparticles for enhancing chemotherapy of malignant cancer. Drug Deliv 25:1746–1755CrossRef Sun Z, Zhang Y, Cao D et al (2018) PD-1/PD-L1 pathway and angiogenesis dual recognizable nanoparticles for enhancing chemotherapy of malignant cancer. Drug Deliv 25:1746–1755CrossRef
33.
Zurück zum Zitat Wilkins MR, Gasteiger E, Bairoch A et al (1999) Protein identification and analysis tools in the ExPASy server. Methods Mol Biol 112:531–552PubMed Wilkins MR, Gasteiger E, Bairoch A et al (1999) Protein identification and analysis tools in the ExPASy server. Methods Mol Biol 112:531–552PubMed
34.
Metadaten
Titel
Discovery of hPRDX5-based peptide inhibitors blocking PD-1/PD-L1 interaction through in silico proteolysis and rational design
verfasst von
Sen Zou
Juanjuan Liu
Zhengyang Sun
Xiao Feng
Zhongbo Wang
Yuanyuan Jin
Zhaoyong Yang
Publikationsdatum
19.11.2019
Verlag
Springer Berlin Heidelberg
Erschienen in
Cancer Chemotherapy and Pharmacology / Ausgabe 1/2020
Print ISSN: 0344-5704
Elektronische ISSN: 1432-0843
DOI
https://doi.org/10.1007/s00280-019-03995-z

Weitere Artikel der Ausgabe 1/2020

Cancer Chemotherapy and Pharmacology 1/2020 Zur Ausgabe

Update Onkologie

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.